mRNA_P-wetherbeei_contig15963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00198BD02A (Cold-shock protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00198BD02A) HSP 1 Score: 124 bits (311), Expect = 6.230e-36 Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
M GTVKWFN+QKG+GF+QPD+G KDVFVHISAVE AGLR+LKEGQK+SFEIVTDKRTGKSSAGNL A
Sbjct: 1 MNTGTVKWFNEQKGYGFVQPDNGQKDVFVHISAVERAGLRTLKEGQKVSFEIVTDKRTGKSSAGNLQA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A0K2DHB3_9HYPH (Cold-shock protein n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A0K2DHB3_9HYPH) HSP 1 Score: 120 bits (302), Expect = 1.470e-34 Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
M+ GTVKWFN+QKG+GFIQPDDG KDVFVHISAVE AGLRSL EGQK+S+E+ TD+RTGK+SAGNL A
Sbjct: 1 MSTGTVKWFNEQKGYGFIQPDDGGKDVFVHISAVERAGLRSLNEGQKISYELETDRRTGKTSAGNLQA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A2W2C731_9HYPH (Cold-shock protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2C731_9HYPH) HSP 1 Score: 120 bits (302), Expect = 1.470e-34 Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
M GTVKWFN+QKG+GFIQPD+G KD+FVHISAVE AGLR+LKEGQK+S+E+VTDKRTG++SAGNL A
Sbjct: 1 MDTGTVKWFNEQKGYGFIQPDNGQKDIFVHISAVERAGLRTLKEGQKVSYEVVTDKRTGRASAGNLVA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A5C1WBM6_9HYPH (Cold-shock protein n=2 Tax=unclassified Labrys (in: Bacteria) TaxID=2688601 RepID=A0A5C1WBM6_9HYPH) HSP 1 Score: 120 bits (300), Expect = 2.970e-34 Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTAD 207
M+ GTVKWFN+QKG+GFIQPDDGSKDVFVHISAVE AG RSL+EGQK+S+EI+ D+R+GK SAGNL A+
Sbjct: 1 MSTGTVKWFNEQKGYGFIQPDDGSKDVFVHISAVEQAGFRSLQEGQKVSYEIIQDRRSGKMSAGNLRAE 69
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A1M7ZJU1_9HYPH (Cold-shock DNA-binding protein family n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1M7ZJU1_9HYPH) HSP 1 Score: 120 bits (300), Expect = 3.060e-34 Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
M+KGTVKWFN QKG+GFIQPDDG KDVFVHISAVE AGL L+EGQK+++EI+TD+RTGKSSAGNL A
Sbjct: 1 MSKGTVKWFNAQKGYGFIQPDDGGKDVFVHISAVERAGLDELREGQKIAYEILTDRRTGKSSAGNLQA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A1Q4BM38_9HYPH (Cold-shock protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1Q4BM38_9HYPH) HSP 1 Score: 119 bits (299), Expect = 4.220e-34 Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNL 198
M++GTVKWFNDQKG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+S+EIV DKR+GKSSA NL
Sbjct: 1 MSQGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKISYEIVVDKRSGKSSADNL 66
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00131CEBAF (cold-shock protein n=1 Tax=Methylocapsa sp. S129 TaxID=1641869 RepID=UPI00131CEBAF) HSP 1 Score: 119 bits (297), Expect = 8.530e-34 Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
MA GTVKWFN KG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+++EIV DKRTGKSSAGNL A
Sbjct: 1 MATGTVKWFNATKGYGFIQPDDGGKDVFVHISAVEQAGLRELNEGQKVNYEIVADKRTGKSSAGNLRA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: B8IRY8_METNO (Cold-shock DNA-binding domain protein n=4 Tax=Methylobacterium TaxID=407 RepID=B8IRY8_METNO) HSP 1 Score: 117 bits (293), Expect = 3.480e-33 Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
M GTVKWFNDQKG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+S+E+ TDKR+GK SAGNL A
Sbjct: 1 MNTGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKRSGKVSAGNLQA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A525IIZ6_BRASZ (Cold-shock protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IIZ6_BRASZ) HSP 1 Score: 117 bits (293), Expect = 3.480e-33 Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
MA+GTVKWFN QKGFGFIQPDDG KDVFVHISAV+ AGL L EGQK+SFE+V D+RTGKSSA NL A
Sbjct: 1 MAQGTVKWFNGQKGFGFIQPDDGGKDVFVHISAVQRAGLADLAEGQKVSFEVVADRRTGKSSADNLRA 68
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00131D6367 (cold-shock protein n=1 Tax=Beijerinckia sp. L45 TaxID=1641855 RepID=UPI00131D6367) HSP 1 Score: 117 bits (293), Expect = 3.480e-33 Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 1
Query: 1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTAD 207
M+ GTVKWFN +KG+GFIQPDDG KDVFVH+SAVE AG+RSL+EGQK+++EIV D+RTGKSSA NL A+
Sbjct: 1 MSTGTVKWFNAEKGYGFIQPDDGGKDVFVHVSAVEQAGMRSLQEGQKINYEIVADRRTGKSSASNLRAE 69 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15963.1.1 >prot_P-wetherbeei_contig15963.1.1 ID=prot_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFback to top mRNA from alignment at P-wetherbeei_contig15963:697..906+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15963.1.1 ID=mRNA_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig15963:697..906+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15963:697..906+ >mRNA_P-wetherbeei_contig15963.1.1 ID=mRNA_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig15963:697..906+ (Phaeothamnion wetherbeei SAG_119_79)back to top |