mRNA_P-wetherbeei_contig15963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15963.1.1
Unique NamemRNA_P-wetherbeei_contig15963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00198BD02A (Cold-shock protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00198BD02A)

HSP 1 Score: 124 bits (311), Expect = 6.230e-36
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            M  GTVKWFN+QKG+GF+QPD+G KDVFVHISAVE AGLR+LKEGQK+SFEIVTDKRTGKSSAGNL A
Sbjct:    1 MNTGTVKWFNEQKGYGFVQPDNGQKDVFVHISAVERAGLRTLKEGQKVSFEIVTDKRTGKSSAGNLQA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A0K2DHB3_9HYPH (Cold-shock protein n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A0K2DHB3_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 1.470e-34
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            M+ GTVKWFN+QKG+GFIQPDDG KDVFVHISAVE AGLRSL EGQK+S+E+ TD+RTGK+SAGNL A
Sbjct:    1 MSTGTVKWFNEQKGYGFIQPDDGGKDVFVHISAVERAGLRSLNEGQKISYELETDRRTGKTSAGNLQA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A2W2C731_9HYPH (Cold-shock protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2C731_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 1.470e-34
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            M  GTVKWFN+QKG+GFIQPD+G KD+FVHISAVE AGLR+LKEGQK+S+E+VTDKRTG++SAGNL A
Sbjct:    1 MDTGTVKWFNEQKGYGFIQPDNGQKDIFVHISAVERAGLRTLKEGQKVSYEVVTDKRTGRASAGNLVA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A5C1WBM6_9HYPH (Cold-shock protein n=2 Tax=unclassified Labrys (in: Bacteria) TaxID=2688601 RepID=A0A5C1WBM6_9HYPH)

HSP 1 Score: 120 bits (300), Expect = 2.970e-34
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTAD 207
            M+ GTVKWFN+QKG+GFIQPDDGSKDVFVHISAVE AG RSL+EGQK+S+EI+ D+R+GK SAGNL A+
Sbjct:    1 MSTGTVKWFNEQKGYGFIQPDDGSKDVFVHISAVEQAGFRSLQEGQKVSYEIIQDRRSGKMSAGNLRAE 69          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A1M7ZJU1_9HYPH (Cold-shock DNA-binding protein family n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1M7ZJU1_9HYPH)

HSP 1 Score: 120 bits (300), Expect = 3.060e-34
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            M+KGTVKWFN QKG+GFIQPDDG KDVFVHISAVE AGL  L+EGQK+++EI+TD+RTGKSSAGNL A
Sbjct:    1 MSKGTVKWFNAQKGYGFIQPDDGGKDVFVHISAVERAGLDELREGQKIAYEILTDRRTGKSSAGNLQA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A1Q4BM38_9HYPH (Cold-shock protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1Q4BM38_9HYPH)

HSP 1 Score: 119 bits (299), Expect = 4.220e-34
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNL 198
            M++GTVKWFNDQKG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+S+EIV DKR+GKSSA NL
Sbjct:    1 MSQGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKISYEIVVDKRSGKSSADNL 66          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00131CEBAF (cold-shock protein n=1 Tax=Methylocapsa sp. S129 TaxID=1641869 RepID=UPI00131CEBAF)

HSP 1 Score: 119 bits (297), Expect = 8.530e-34
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            MA GTVKWFN  KG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+++EIV DKRTGKSSAGNL A
Sbjct:    1 MATGTVKWFNATKGYGFIQPDDGGKDVFVHISAVEQAGLRELNEGQKVNYEIVADKRTGKSSAGNLRA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: B8IRY8_METNO (Cold-shock DNA-binding domain protein n=4 Tax=Methylobacterium TaxID=407 RepID=B8IRY8_METNO)

HSP 1 Score: 117 bits (293), Expect = 3.480e-33
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            M  GTVKWFNDQKG+GFIQPDDG KDVFVHISAVE AGLR L EGQK+S+E+ TDKR+GK SAGNL A
Sbjct:    1 MNTGTVKWFNDQKGYGFIQPDDGGKDVFVHISAVERAGLRGLVEGQKISYELQTDKRSGKVSAGNLQA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: A0A525IIZ6_BRASZ (Cold-shock protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IIZ6_BRASZ)

HSP 1 Score: 117 bits (293), Expect = 3.480e-33
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTA 204
            MA+GTVKWFN QKGFGFIQPDDG KDVFVHISAV+ AGL  L EGQK+SFE+V D+RTGKSSA NL A
Sbjct:    1 MAQGTVKWFNGQKGFGFIQPDDGGKDVFVHISAVQRAGLADLAEGQKVSFEVVADRRTGKSSADNLRA 68          
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Match: UPI00131D6367 (cold-shock protein n=1 Tax=Beijerinckia sp. L45 TaxID=1641855 RepID=UPI00131D6367)

HSP 1 Score: 117 bits (293), Expect = 3.480e-33
Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSFEIVTDKRTGKSSAGNLTAD 207
            M+ GTVKWFN +KG+GFIQPDDG KDVFVH+SAVE AG+RSL+EGQK+++EIV D+RTGKSSA NL A+
Sbjct:    1 MSTGTVKWFNAEKGYGFIQPDDGGKDVFVHVSAVEQAGMRSLQEGQKINYEIVADRRTGKSSASNLRAE 69          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198BD02A6.230e-3683.82Cold-shock protein n=1 Tax=Hyphomicrobiales bacter... [more]
A0A0K2DHB3_9HYPH1.470e-3479.41Cold-shock protein n=5 Tax=Proteobacteria TaxID=12... [more]
A0A2W2C731_9HYPH1.470e-3477.94Cold-shock protein n=1 Tax=Aestuariivirga litorali... [more]
A0A5C1WBM6_9HYPH2.970e-3476.81Cold-shock protein n=2 Tax=unclassified Labrys (in... [more]
A0A1M7ZJU1_9HYPH3.060e-3479.41Cold-shock DNA-binding protein family n=2 Tax=Hyph... [more]
A0A1Q4BM38_9HYPH4.220e-3481.82Cold-shock protein n=2 Tax=Hyphomicrobiales TaxID=... [more]
UPI00131CEBAF8.530e-3480.88cold-shock protein n=1 Tax=Methylocapsa sp. S129 T... [more]
B8IRY8_METNO3.480e-3379.41Cold-shock DNA-binding domain protein n=4 Tax=Meth... [more]
A0A525IIZ6_BRASZ3.480e-3379.41Cold-shock protein n=1 Tax=Bradyrhizobium sp. TaxI... [more]
UPI00131D63673.480e-3373.91cold-shock protein n=1 Tax=Beijerinckia sp. L45 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15963contigP-wetherbeei_contig15963:697..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1211115.ALIQ01000168_gene4006
PFAMsCSD
Model size210
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03704
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.41e-35
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,2UF6W@28211|Alphaproteobacteria,3NBHU@45404|Beijerinckiaceae
Description'Cold-shock' DNA-binding domain
Cds size210
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.9199688-CDS-P-wetherbeei_contig15963:696..9061683186072.9199688-CDS-P-wetherbeei_contig15963:696..906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15963 697..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15963.1.1prot_P-wetherbeei_contig15963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15963 697..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15963.1.1

>prot_P-wetherbeei_contig15963.1.1 ID=prot_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MAKGTVKWFNDQKGFGFIQPDDGSKDVFVHISAVESAGLRSLKEGQKLSF
EIVTDKRTGKSSAGNLTAD*
back to top

mRNA from alignment at P-wetherbeei_contig15963:697..906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15963.1.1 ID=mRNA_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig15963:697..906+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAAGGTACTGTTAAGTGGTTTAACGATCAAAAGGGATTTGGCTT TATTCAGCCGGACGATGGAAGCAAGGATGTTTTCGTCCATATTTCCGCTG TAGAAAGCGCCGGTCTGCGCTCTCTCAAGGAAGGACAGAAGCTCTCCTTT GAAATCGTGACCGACAAGCGCACGGGCAAGAGCTCGGCTGGTAATCTGAC TGCTGATTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15963:697..906+

>mRNA_P-wetherbeei_contig15963.1.1 ID=mRNA_P-wetherbeei_contig15963.1.1|Name=mRNA_P-wetherbeei_contig15963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig15963:697..906+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTAAAGGTACTGTTAAGTGGTTTAACGATCAAAAGGGATTTGGCTT
TATTCAGCCGGACGATGGAAGCAAGGATGTTTTCGTCCATATTTCCGCTG
TAGAAAGCGCCGGTCTGCGCTCTCTCAAGGAAGGACAGAAGCTCTCCTTT
GAAATCGTGACCGACAAGCGCACGGGCAAGAGCTCGGCTGGTAATCTGAC
TGCTGATTAA
back to top