mRNA_P-wetherbeei_contig1594.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1594.2.1
Unique NamemRNA_P-wetherbeei_contig1594.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1594.2.1 vs. uniprot
Match: A0A835YPH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.750e-9
Identity = 44/104 (42.31%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:   28 LTGNGAALRVSQKRVLSPPPPAYVVATATPLPPVVSEVQTFTCQEL-GSTAGAFFTLSFRGE-TTAFIAAGAVAAPFMLPPCSWRRGVPCRGDGSSVQEKLQAL 333
            LTG  A L V++    +PP     +A A PLPP V EVQ  TC+ L G T      L+      T  I+A A   P +LP C       CRGDGS+VQE+L+AL
Sbjct: 2194 LTGTAATLTVAEAVPWAPPSRTQAIALAAPLPPTVHEVQEVTCRILAGGTGVPQLRLTIGAALATEAISAAAALRPELLPECGAGVIGACRGDGSTVQERLEAL 2297
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BLAST of mRNA_P-wetherbeei_contig1594.2.1 vs. uniprot
Match: A0A482RYS2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYS2_9ARCH)

HSP 1 Score: 62.8 bits (151), Expect = 4.410e-9
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:    1 PEFRIGTVNLTGNGAALRVSQ--KRVLSPPPPAY---VVATATPLPPVVSEVQTFTCQELGSTAGAFFTLSFRGETTAFIAAGAVAAPFMLPPCSWR-RGVPCRGDGSSVQEKLQALSTV 342
            P   +G+  + G+  +LRVS+   +V +    +Y   + +   P  P VSE+QT  C     TA   F+LSFR  +TA +   +   P  LPPCS    G+PCRGDG +V E+L AL T+
Sbjct: 1991 PALSMGSSAVVGSSGSLRVSEMNSQVFT----SYSKQLFSVQYPSVPEVSEMQTIVCTSRFLTARRGFSLSFRNVSTAMLFTDSYLLPEALPPCSSVVTGLPCRGDGLTVFERLSALYTI 2106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1594.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YPH6_9STRA1.750e-942.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482RYS2_9ARCH4.410e-937.50Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1594contigP-wetherbeei_contig1594:2159..2614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6U7
Model size342
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.28e-18
EggNOG OGs28IVJ@1|root,2QR77@2759|Eukaryota
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.2396436-CDS-P-wetherbeei_contig1594:2158..23411683186072.2396436-CDS-P-wetherbeei_contig1594:2158..2341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1594 2159..2341 -
1683186072.2486818-CDS-P-wetherbeei_contig1594:2455..26141683186072.2486818-CDS-P-wetherbeei_contig1594:2455..2614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1594 2456..2614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1594.2.1prot_P-wetherbeei_contig1594.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1594 2159..2614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1594.2.1

>prot_P-wetherbeei_contig1594.2.1 ID=prot_P-wetherbeei_contig1594.2.1|Name=mRNA_P-wetherbeei_contig1594.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
PEFRIGTVNLTGNGAALRVSQKRVLSPPPPAYVVATATPLPPVVSEVQTF
TCQELGSTAGAFFTLSFRGETTAFIAAGAVAAPFMLPPCSWRRGVPCRGD
GSSVQEKLQALSTV
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mRNA from alignment at P-wetherbeei_contig1594:2159..2614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1594.2.1 ID=mRNA_P-wetherbeei_contig1594.2.1|Name=mRNA_P-wetherbeei_contig1594.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1594:2159..2614- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAGTTTCGCATCGGAACGGTCAATTTAACGGGCAATGGCGCCGCACT
GCGCGTAAGCCAGAAGAGGGTGCTGTCGCCTCCGCCGCCAGCCTATGTGG
TGGCGACGGCGACGCCGCTGCCACCCGTCGTGTCCGAAGTGCAGACCTTT
ACGTGTCAGGTCTTGAACGCCAGCAGTTACAACAGCAGCTACAACCGGAG
TATCAGCTTTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGTACCAGTGAGCACGAGCAGGAGCTGGGATCAACGGCCGGTGCATTC
TTTACCCTCTCTTTCCGCGGCGAAACCACGGCGTTCATTGCGGCCGGCGC
AGTTGCAGCACCATTCATGCTGCCGCCCTGTAGCTGGCGCCGGGGCGTGC
CGTGCCGCGGTGATGGCAGCAGCGTCCAAGAAAAACTCCAGGCGCTTTCG
ACAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1594:2159..2614-

>mRNA_P-wetherbeei_contig1594.2.1 ID=mRNA_P-wetherbeei_contig1594.2.1|Name=mRNA_P-wetherbeei_contig1594.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig1594:2159..2614- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAGTTTCGCATCGGAACGGTCAATTTAACGGGCAATGGCGCCGCACT
GCGCGTAAGCCAGAAGAGGGTGCTGTCGCCTCCGCCGCCAGCCTATGTGG
TGGCGACGGCGACGCCGCTGCCACCCGTCGTGTCCGAAGTGCAGACCTTT
ACGTGTCAGGAGCTGGGATCAACGGCCGGTGCATTCTTTACCCTCTCTTT
CCGCGGCGAAACCACGGCGTTCATTGCGGCCGGCGCAGTTGCAGCACCAT
TCATGCTGCCGCCCTGTAGCTGGCGCCGGGGCGTGCCGTGCCGCGGTGAT
GGCAGCAGCGTCCAAGAAAAACTCCAGGCGCTTTCGACAGTC
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