mRNA_P-wetherbeei_contig15939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15939.1.1
Unique NamemRNA_P-wetherbeei_contig15939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A537T1J4_9PROT (SBP_bac_5 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537T1J4_9PROT)

HSP 1 Score: 236 bits (602), Expect = 4.490e-76
Identity = 110/143 (76.92%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKI 429
            LGI+A +R+VDAVQ+RKR+DDFDFDL VQRFGFSSTPGDSLRS+FSS AAA +GSQNLAGI+DP IDA+ID+II+AD R  LT ACRALDR+IR GRYW+PHWYK SHW+AYWD F RP  KPRYARGV ET W+DRDKAA I
Sbjct:  132 LGIEATLRIVDAVQYRKRVDDFDFDLTVQRFGFSSTPGDSLRSFFSSQAAAKRGSQNLAGISDPVIDALIDKIIAADNRATLTAACRALDRVIRTGRYWVPHWYKPSHWLAYWDVFSRPATKPRYARGVPETCWYDRDKAANI 274          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A6L5FEU6_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FEU6_9HYPH)

HSP 1 Score: 246 bits (629), Expect = 5.600e-76
Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKI 429
            +GIDA +RMVD VQFRKR+DDFDFD+ VQRFGFSSTPGDSLR+YFSS AAA+KGSQN+AGIADPAIDA+ID+IISA TR  LTVACRALDR+IRAGRYWIPHWYKASHWIAYWD FGRP  KPR+ARG+  TWW+D  KAAK+
Sbjct:  492 VGIDATVRMVDPVQFRKRVDDFDFDITVQRFGFSSTPGDSLRAYFSSQAAAIKGSQNIAGIADPAIDALIDKIISAGTRAELTVACRALDRVIRAGRYWIPHWYKASHWIAYWDVFGRPAAKPRFARGIPATWWYDPAKAAKL 634          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A537SVS4_9PROT (ABC transporter substrate-binding protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SVS4_9PROT)

HSP 1 Score: 245 bits (625), Expect = 1.510e-75
Identity = 110/143 (76.92%), Postives = 131/143 (91.61%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKI 429
            LGI+AN+R+VD VQ+RKR+DDFDFDL +QRF FSSTPGDSLRSYFSS AAA++GSQNLAGI+DP IDA+IDRII+AD+R +L  AC+ALDR+IR+GRYW+PHWYKASHW+AYWD FGRP  KPRYARG+ ETWW+DR+KAAKI
Sbjct:  476 LGIEANLRIVDPVQYRKRVDDFDFDLTIQRFSFSSTPGDSLRSYFSSPAAAMRGSQNLAGISDPVIDALIDRIIAADSRNSLVTACKALDRVIRSGRYWVPHWYKASHWLAYWDVFGRPATKPRYARGIPETWWYDREKAAKI 618          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A1Q7BZB3_9PROT (SBP_bac_5 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BZB3_9PROT)

HSP 1 Score: 241 bits (615), Expect = 4.460e-74
Identity = 108/143 (75.52%), Postives = 130/143 (90.91%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKI 429
            LGI+AN+R+VD VQ+RKR+DDFDFDL VQRFGFS+TPGDSLR +FSS AAA++GSQNLAGI+DP IDA+I++II+AD R +LT+ACRALDR+IR+GRYW+PHWYKASHW+AYWD F RP  KPRYARG  ETWW+DRDKAAK+
Sbjct:  473 LGIEANLRIVDPVQYRKRVDDFDFDLTVQRFGFSTTPGDSLRIFFSSQAAAMRGSQNLAGISDPVIDALIEKIIAADNRTSLTMACRALDRVIRSGRYWVPHWYKASHWLAYWDVFSRPASKPRYARGAPETWWYDRDKAAKL 615          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A1Q7BNX9_9PROT (SBP_bac_5 domain-containing protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BNX9_9PROT)

HSP 1 Score: 240 bits (613), Expect = 9.190e-74
Identity = 109/146 (74.66%), Postives = 130/146 (89.04%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKIGPG 438
            LGI+AN+R+VD VQ+RKR+DDFDFDL VQRFGFSSTPGDSLRS+FSS AA ++GSQNLAG++DP IDA+I++II+AD R +LT ACRALDR+IR+GRYW+PHWYKASHW+AYWD F RP  KPRYARG  ETWW+DRDKAAK+  G
Sbjct:  476 LGIEANLRIVDPVQYRKRVDDFDFDLTVQRFGFSSTPGDSLRSFFSSQAAGMRGSQNLAGMSDPVIDALIEKIIAADDRASLTHACRALDRVIRSGRYWVPHWYKASHWLAYWDVFSRPATKPRYARGAPETWWYDRDKAAKLERG 621          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A363TLQ4_9BRAD (SBP_bac_5 domain-containing protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TLQ4_9BRAD)

HSP 1 Score: 240 bits (612), Expect = 1.430e-73
Identity = 110/144 (76.39%), Postives = 128/144 (88.89%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKIG 432
            +GIDA +R+VD VQ+RKR+DDFDFDL V RFGFS  PGDSLRS+FSS AAA +GS NLAG+ADPAIDA+I+RII+A+TRPAL  ACRALDR+IRAGRYW+P W KASHWIAYWD FGRPPQKP+YARGVLETWW+D  +AAK+G
Sbjct:  480 VGIDATLRIVDPVQYRKRVDDFDFDLTVSRFGFSLAPGDSLRSFFSSQAAASRGSNNLAGMADPAIDALIERIIAAETRPALVFACRALDRVIRAGRYWVPQWNKASHWIAYWDVFGRPPQKPKYARGVLETWWYDETRAAKLG 623          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A6N7GZA0_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GZA0_9HYPH)

HSP 1 Score: 240 bits (612), Expect = 1.460e-73
Identity = 104/142 (73.24%), Postives = 129/142 (90.85%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAK 426
            LG+DA++R+VD  Q+R+R+DDFDFD+ VQRF FS+ PGDSLR+YF+S AAA+KGSQNLAGIADP +DA++D++I AD+RPAL  AC+ALDR+IRAGRYW+PHWYKASHWIAYWD FGRPP KPR+ARGV ETWW+DR++AAK
Sbjct:  481 LGVDASLRVVDPAQYRRRVDDFDFDITVQRFSFSTLPGDSLRTYFTSQAAAVKGSQNLAGIADPVVDALVDKVIGADSRPALVTACKALDRVIRAGRYWVPHWYKASHWIAYWDVFGRPPTKPRFARGVPETWWYDRERAAK 622          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A537MWM0_9PROT (ABC transporter substrate-binding protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MWM0_9PROT)

HSP 1 Score: 233 bits (595), Expect = 1.450e-71
Identity = 100/146 (68.49%), Postives = 129/146 (88.36%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKIGPG 438
            LG++AN+R+VD VQ+RKR+DDFDFD+ VQRFGFS+TPG+SLR++FSS AAA+KGSQN+ GIADP IDA+I+R+I+AD+RP L  AC+ALDR+IR+GRYW+PHWYKASHW+AYWD FGRP  +PRYAR + +TWW+DR+K  K+  G
Sbjct:  425 LGVEANLRIVDPVQYRKRVDDFDFDIVVQRFGFSNTPGESLRTFFSSHAAAIKGSQNVGGIADPVIDALIERVIAADSRPQLIAACKALDRVIRSGRYWVPHWYKASHWLAYWDVFGRPEAQPRYARAIPDTWWYDREKGEKLSRG 570          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A0S3PQH2_9BRAD (Oligopeptide-binding protein AppA n=2 Tax=Variibacter gotjawalensis TaxID=1333996 RepID=A0A0S3PQH2_9BRAD)

HSP 1 Score: 232 bits (592), Expect = 1.260e-70
Identity = 106/142 (74.65%), Postives = 126/142 (88.73%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAK 426
            +GIDA +R+VDAVQFR+R+DDFDFD  VQRF FS+TPGDSLR+YFSS AAA+KGS+NLAG+ADPAID +I++II+ADTRP L  A RALDR+IRA RYW+PHW KASHWIAYWD + RP  KP+YARGV+ETWW+DRDKAAK
Sbjct:  479 IGIDATLRVVDAVQFRRRLDDFDFDATVQRFSFSTTPGDSLRTYFSSQAAAIKGSRNLAGMADPAIDMLIEKIIAADTRPELVFAARALDRVIRANRYWVPHWNKASHWIAYWDLYSRPAAKPKYARGVMETWWYDRDKAAK 620          
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Match: A0A127F6I9_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F6I9_9HYPH)

HSP 1 Score: 231 bits (588), Expect = 4.820e-70
Identity = 108/143 (75.52%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 LGIDANIRMVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNLAGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASHWIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKI 429
            LGIDA +R+VD VQ ++R+ DFDFD+ +QRFGFSSTPGDSLR+YFSS +A +KGSQNL+G+ADPAIDAMI+RII+A +R  LTVACRALDRLIRAGRYW+P WYKASHWIAYWDTFG P  KPRYARG  ETWWHD  KA+KI
Sbjct:  478 LGIDARLRLVDPVQAQQRMKDFDFDVVIQRFGFSSTPGDSLRTYFSSKSADIKGSQNLSGMADPAIDAMIERIIAAQSRAELTVACRALDRLIRAGRYWVPQWYKASHWIAYWDTFGWPKTKPRYARGAPETWWHDAAKASKI 620          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537T1J4_9PROT4.490e-7676.92SBP_bac_5 domain-containing protein n=1 Tax=Alphap... [more]
A0A6L5FEU6_9HYPH5.600e-7680.42ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A537SVS4_9PROT1.510e-7576.92ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A1Q7BZB3_9PROT4.460e-7475.52SBP_bac_5 domain-containing protein n=1 Tax=Alphap... [more]
A0A1Q7BNX9_9PROT9.190e-7474.66SBP_bac_5 domain-containing protein n=2 Tax=unclas... [more]
A0A363TLQ4_9BRAD1.430e-7376.39SBP_bac_5 domain-containing protein n=1 Tax=Bradyr... [more]
A0A6N7GZA0_9HYPH1.460e-7373.24ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A537MWM0_9PROT1.450e-7168.49ABC transporter substrate-binding protein (Fragmen... [more]
A0A0S3PQH2_9BRAD1.260e-7074.65Oligopeptide-binding protein AppA n=2 Tax=Variibac... [more]
A0A127F6I9_9HYPH4.820e-7075.52ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15939contigP-wetherbeei_contig15939:6..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1429916.X566_06785
Preferred nameyejA
PFAMsSBP_bac_5
Model size441
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K13893
KEGG TC3.A.1.5.21,3.A.1.5.24
KEGG Pathwayko02010,map02010
KEGG ModuleM00349
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-63
EggNOG OGsCOG4166@1|root,COG4166@2|Bacteria,1MUVU@1224|Proteobacteria,2TQJX@28211|Alphaproteobacteria,3JTJ1@41294|Bradyrhizobiaceae
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size417
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.1370027-UTR-P-wetherbeei_contig15939:5..291683186072.1370027-UTR-P-wetherbeei_contig15939:5..29Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15939 6..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186072.1492822-CDS-P-wetherbeei_contig15939:29..4461683186072.1492822-CDS-P-wetherbeei_contig15939:29..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15939 30..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15939.1.1prot_P-wetherbeei_contig15939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15939 30..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15939.1.1

>prot_P-wetherbeei_contig15939.1.1 ID=prot_P-wetherbeei_contig15939.1.1|Name=mRNA_P-wetherbeei_contig15939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MVDAVQFRKRIDDFDFDLAVQRFGFSSTPGDSLRSYFSSGAAALKGSQNL
AGIADPAIDAMIDRIISADTRPALTVACRALDRLIRAGRYWIPHWYKASH
WIAYWDTFGRPPQKPRYARGVLETWWHDRDKAAKIGPG*
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mRNA from alignment at P-wetherbeei_contig15939:6..446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15939.1.1 ID=mRNA_P-wetherbeei_contig15939.1.1|Name=mRNA_P-wetherbeei_contig15939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15939:6..446+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCATCGATGCCAACATCCGGATGGTCGATGCCGTGCAATTCCGCAA GCGAATCGACGATTTCGATTTCGACCTTGCGGTGCAGCGCTTCGGTTTCT CCTCGACGCCGGGCGATTCGCTGCGCTCCTATTTTTCGTCCGGAGCGGCC GCGCTCAAAGGCTCGCAAAACCTTGCCGGCATCGCCGACCCGGCGATCGA TGCCATGATCGACCGCATCATCTCGGCCGATACGCGTCCCGCGCTCACCG TTGCCTGCCGCGCGCTCGACCGGCTGATCCGCGCCGGTCGCTACTGGATA CCGCACTGGTACAAGGCCTCGCATTGGATCGCCTATTGGGACACATTCGG CCGGCCGCCGCAGAAGCCGCGGTATGCTCGCGGCGTGCTGGAAACTTGGT GGCATGACCGCGACAAGGCGGCCAAGATCGGGCCGGGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15939:6..446+

>mRNA_P-wetherbeei_contig15939.1.1 ID=mRNA_P-wetherbeei_contig15939.1.1|Name=mRNA_P-wetherbeei_contig15939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig15939:6..446+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGATGCCGTGCAATTCCGCAAGCGAATCGACGATTTCGATTTCGA
CCTTGCGGTGCAGCGCTTCGGTTTCTCCTCGACGCCGGGCGATTCGCTGC
GCTCCTATTTTTCGTCCGGAGCGGCCGCGCTCAAAGGCTCGCAAAACCTT
GCCGGCATCGCCGACCCGGCGATCGATGCCATGATCGACCGCATCATCTC
GGCCGATACGCGTCCCGCGCTCACCGTTGCCTGCCGCGCGCTCGACCGGC
TGATCCGCGCCGGTCGCTACTGGATACCGCACTGGTACAAGGCCTCGCAT
TGGATCGCCTATTGGGACACATTCGGCCGGCCGCCGCAGAAGCCGCGGTA
TGCTCGCGGCGTGCTGGAAACTTGGTGGCATGACCGCGACAAGGCGGCCA
AGATCGGGCCGGGATAG
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