mRNA_P-wetherbeei_contig15931.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15931.1.1
Unique NamemRNA_P-wetherbeei_contig15931.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15931.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15931contigP-wetherbeei_contig15931:578..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size676
Hectar predicted targeting categoryother localisation
Exons2
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.852314-CDS-P-wetherbeei_contig15931:577..11871683186071.852314-CDS-P-wetherbeei_contig15931:577..1187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15931 578..1187 -
1683186071.863016-CDS-P-wetherbeei_contig15931:1499..15401683186071.863016-CDS-P-wetherbeei_contig15931:1499..1540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15931 1500..1540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.8783493-UTR-P-wetherbeei_contig15931:1540..15631683186071.8783493-UTR-P-wetherbeei_contig15931:1540..1563Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15931 1541..1563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15931.1.1prot_P-wetherbeei_contig15931.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15931 578..1540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15931.1.1

>prot_P-wetherbeei_contig15931.1.1 ID=prot_P-wetherbeei_contig15931.1.1|Name=mRNA_P-wetherbeei_contig15931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
MCAVLAGDDSDIDFAVRQGPAHPAPWQAELLVRLAYTMPTATLPDVAAGA
ASCAARRPTPAVAAGQAAAGRAATAAGGGWPDAVLLEVLQEDAGAAAAAL
LRLGSDPAVLATALHVTHILKVAGFFDVEDFGNGGGNGGGGGFGSSGGIE
RIVFDSLITELAGSLAAVPGAYDLAFGYVIKRRTGTVQATAAALSVAAAA
AAADFTEAACRAFVQWC
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mRNA from alignment at P-wetherbeei_contig15931:578..1563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15931.1.1 ID=mRNA_P-wetherbeei_contig15931.1.1|Name=mRNA_P-wetherbeei_contig15931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=986bp|location=Sequence derived from alignment at P-wetherbeei_contig15931:578..1563- (Phaeothamnion wetherbeei SAG_119_79)
GCGACGCCGCCGAGGCCGCGTGCATGTGCGCCGTGCTCGCCGGTGACGAC
AGCGACATCGACTTGTGAGTCATTTCATATCCCGTTTCCAAACCCCAAAG
AAACGGCTTTCTGTTCTGCCATAGCTCTTTCCTCTTTCATTGCCTCTTTT
GCCGCTCGTTTGATTGCTGTATCGTTTCCGCGCCGGTCTGTCCAGGTTTC
TTTCCTCCTTCTTTCCCTTCTCTTTGTGGTAGCGGCGTTGTTTCAAAGTG
GTACTTCGATGTCGCTCCTAAATCCGATTTCCAGTCTCACCTCGGCTTTT
CAACTTGTCACAGCACGCAATTGTTCTCTTTTTCCCACGCCATGGCACTT
CGTGCTGCTGCCTCAACAAACCGCAGCGCGGTCCGGCAAGGGCCCGCACA
CCCGGCGCCCTGGCAGGCGGAGCTGCTGGTGCGCCTCGCCTACACCATGC
CGACCGCCACCCTGCCCGACGTCGCCGCCGGTGCCGCTTCCTGTGCCGCC
CGCCGCCCGACGCCGGCAGTAGCGGCGGGACAGGCGGCGGCAGGACGAGC
GGCCACGGCTGCCGGCGGCGGGTGGCCCGATGCGGTTCTGCTGGAAGTGC
TGCAGGAAGATGCGGGGGCGGCGGCAGCGGCGCTGCTCCGGCTGGGCTCC
GACCCAGCGGTGCTGGCGACGGCGCTGCATGTGACGCACATCCTTAAGGT
TGCCGGCTTCTTTGACGTCGAGGACTTTGGGAACGGTGGCGGCAACGGCG
GCGGCGGCGGGTTTGGCAGCAGCGGCGGCATCGAGAGGATCGTTTTTGAC
AGCCTCATTACAGAGCTGGCCGGCTCGCTGGCGGCTGTGCCCGGCGCCTA
TGACTTGGCGTTCGGCTACGTGATTAAGCGGCGCACGGGGACGGTGCAGG
CGACGGCGGCGGCGCTGTCCGTCGCCGCTGCTGCTGCGGCCGCTGACTTC
ACCGAGGCTGCCTGCCGCGCCTTCGTGCAATGGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15931:578..1563-

>mRNA_P-wetherbeei_contig15931.1.1 ID=mRNA_P-wetherbeei_contig15931.1.1|Name=mRNA_P-wetherbeei_contig15931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig15931:578..1563- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGCCGTGCTCGCCGGTGACGACAGCGACATCGACTTCGCGGTCCG
GCAAGGGCCCGCACACCCGGCGCCCTGGCAGGCGGAGCTGCTGGTGCGCC
TCGCCTACACCATGCCGACCGCCACCCTGCCCGACGTCGCCGCCGGTGCC
GCTTCCTGTGCCGCCCGCCGCCCGACGCCGGCAGTAGCGGCGGGACAGGC
GGCGGCAGGACGAGCGGCCACGGCTGCCGGCGGCGGGTGGCCCGATGCGG
TTCTGCTGGAAGTGCTGCAGGAAGATGCGGGGGCGGCGGCAGCGGCGCTG
CTCCGGCTGGGCTCCGACCCAGCGGTGCTGGCGACGGCGCTGCATGTGAC
GCACATCCTTAAGGTTGCCGGCTTCTTTGACGTCGAGGACTTTGGGAACG
GTGGCGGCAACGGCGGCGGCGGCGGGTTTGGCAGCAGCGGCGGCATCGAG
AGGATCGTTTTTGACAGCCTCATTACAGAGCTGGCCGGCTCGCTGGCGGC
TGTGCCCGGCGCCTATGACTTGGCGTTCGGCTACGTGATTAAGCGGCGCA
CGGGGACGGTGCAGGCGACGGCGGCGGCGCTGTCCGTCGCCGCTGCTGCT
GCGGCCGCTGACTTCACCGAGGCTGCCTGCCGCGCCTTCGTGCAATGGTG
C
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