mRNA_P-wetherbeei_contig1592.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1592.3.1
Unique NamemRNA_P-wetherbeei_contig1592.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1592.3.1 vs. uniprot
Match: A0A835YNF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.290e-37
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  188 DLRSRIPRPVLFMVAGAVGNFFFFYLSQIVYALNTCEWQRASVSWTLSYFISIWLQHALNALIVFGMPEK--YWRGLGATYATYSITLGLSPLVNAAIIASIPNCTPTTAWWGTLGATGCINYLTVSSAM 571
            ++ S +P+P+ F ++G +GN  FF++ + VY  N  +WQ+A+VSW +SY IS+WLQH+L+ L+VFG   +  YW  L  TYATYS+++ LSP+VNAA+I  +   + + AW+GTL +TG +NY TVS AM
Sbjct:    7 EVLSFLPQPLRFAISGGLGNLCFFFIDKAVYMYNPFDWQKATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYV-GLSHSLAWFGTLASTGVLNYFTVSKAM 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1592.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNF2_9STRA1.290e-3747.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1592contigP-wetherbeei_contig1592:3066..4106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog192875.XP_004349779.1
PFAMsGtrA
Model size619
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue4.66e-16
EggNOG OGs2E6Y9@1|root,2SDKF@2759|Eukaryota
DescriptionGtrA-like protein
Cds size417
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.314671-UTR-P-wetherbeei_contig1592:3065..30921683186071.314671-UTR-P-wetherbeei_contig1592:3065..3092Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1592 3066..3092 -
1683186071.3553767-UTR-P-wetherbeei_contig1592:3931..41061683186071.3553767-UTR-P-wetherbeei_contig1592:3931..4106Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1592 3932..4106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.3256824-CDS-P-wetherbeei_contig1592:3092..33291683186071.3256824-CDS-P-wetherbeei_contig1592:3092..3329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1592 3093..3329 -
1683186071.3379152-CDS-P-wetherbeei_contig1592:3569..36101683186071.3379152-CDS-P-wetherbeei_contig1592:3569..3610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1592 3570..3610 -
1683186071.3471336-CDS-P-wetherbeei_contig1592:3792..39311683186071.3471336-CDS-P-wetherbeei_contig1592:3792..3931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1592 3793..3931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1592.3.1prot_P-wetherbeei_contig1592.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1592 3093..3931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1592.3.1

>prot_P-wetherbeei_contig1592.3.1 ID=prot_P-wetherbeei_contig1592.3.1|Name=mRNA_P-wetherbeei_contig1592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MAPTDLRSRIPRPVLFMVAGAVGNFFFFYLSQIVYALNTCEWQRASVSWT
LSYFISIWLQHALNALIVFGMPEKYWRGLGATYATYSITLGLSPLVNAAI
IASIPNCTPTTAWWGTLGATGCINYLTVSSAMEDKREA*
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mRNA from alignment at P-wetherbeei_contig1592:3066..4106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1592.3.1 ID=mRNA_P-wetherbeei_contig1592.3.1|Name=mRNA_P-wetherbeei_contig1592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:3066..4106- (Phaeothamnion wetherbeei SAG_119_79)
TCTAGTTCGTGCTTCCTGCATCGGAGGCCATCTTCAGCATTAGAACGGGC
CTTACGGTGTTGCACAGGCAAGAGAAGAGAGCAGGCGGACGGAAGGAACG
CCTGTGACTTGAGATCAGCCATTCAAAATACCAACTTCGAGCACAAAGGA
AACAGTGTGTTGCAAGGGTGTGACAATGGCGCCAACGGACTTAAGGAGCC
GCATCCCGCGTCCTGTCCTTTTCATGGTCGCTGGAGCAGTGGGGAACTTC
TTTTTCTTCTATCTTTCTCAAATCGTTTACGCTTTGAACACGTGCGAATG
GCAAAGAGCATCAGGTAAGAGGGGATACATCGGGGATATCTGCGTTCCAA
ATTTCGCTGCGCTCCGCTGTCTTTGGTTTGGTTGTTCTACAGCTTCAGCT
GGAAGGGTCTTCAGAGGTCCGCACTTGATAAATGTTGGTACTGCATCTCT
CAACGACTCCTTTGGGGCCCTTTCCTCTCCCGCACGCAATCTCCAGTTTC
ATGGACGCTCTCCTACTTCATCTCCATTTGGCTGCAAGTGAGTACCTGGC
GTCATACAATTGATGTTTACACCTTACGTCCCGCAAGGGAGACAGGTGCT
CATACCAGAAACCAAGGAACCTTTGCATCTCTCGGAAAGTTGCTTCTCTC
GGCCCCGCCTCCCTTCTTTATACCCATGGTATTAGAAACGTGCTAAACAG
ATTGGCAATTTTGACTTTCTCCACTGGCTTGTGGTTGCACCTTCGTTCCG
ATTCCTGTCGGCGCCGCCGCCATGCAGCACGCGCTGAACGCTCTAATCGT
CTTCGGCATGCCCGAGAAATACTGGCGGGGCCTCGGAGCTACTTACGCCA
CCTATTCCATAACCCTCGGGCTGTCGCCCCTGGTCAACGCGGCGATCATC
GCCTCCATTCCAAACTGCACGCCGACGACGGCGTGGTGGGGTACGCTCGG
GGCGACTGGCTGCATAAATTACTTGACTGTGTCTTCGGCGATGGAAGACA
AAAGAGAGGCATAAGTAAATAAGGCGAACGTCTGAAGAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1592:3066..4106-

>mRNA_P-wetherbeei_contig1592.3.1 ID=mRNA_P-wetherbeei_contig1592.3.1|Name=mRNA_P-wetherbeei_contig1592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:3066..4106- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCAACGGACTTAAGGAGCCGCATCCCGCGTCCTGTCCTTTTCAT
GGTCGCTGGAGCAGTGGGGAACTTCTTTTTCTTCTATCTTTCTCAAATCG
TTTACGCTTTGAACACGTGCGAATGGCAAAGAGCATCAGTTTCATGGACG
CTCTCCTACTTCATCTCCATTTGGCTGCAACACGCGCTGAACGCTCTAAT
CGTCTTCGGCATGCCCGAGAAATACTGGCGGGGCCTCGGAGCTACTTACG
CCACCTATTCCATAACCCTCGGGCTGTCGCCCCTGGTCAACGCGGCGATC
ATCGCCTCCATTCCAAACTGCACGCCGACGACGGCGTGGTGGGGTACGCT
CGGGGCGACTGGCTGCATAAATTACTTGACTGTGTCTTCGGCGATGGAAG
ACAAAAGAGAGGCATAA
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