mRNA_P-wetherbeei_contig1592.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1592.2.1
Unique NamemRNA_P-wetherbeei_contig1592.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1592.2.1 vs. uniprot
Match: A0A835Z8W4_9STRA (WAPL domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.840e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    7 DSFTQVEVDALVLSGYACLLLGCLACGGGPPAEATLAALPRRSPRVVVRVLQAFVAMQQHAGILTKEMAVPVCHLVEQLE 246
            D  ++ E D LVL+GY  LLLGCL+        A  A LP  +   + RVL+AF+A+Q+ A +LT EMA+PVC L+E+LE
Sbjct:  718 DCLSRAEADNLVLAGYCSLLLGCLSVRDEAARAAVAARLPGGTVSALARVLRAFLALQKQAEVLTGEMALPVCALIEELE 797
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BLAST of mRNA_P-wetherbeei_contig1592.2.1 vs. uniprot
Match: D7FW36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW36_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.400e-7
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   10 SFTQVEVDALVLSGYACLLLGCLACGGGPPAEATLAALPRRSPRVVVRVLQAFVAMQQHAGILTKEMAVPVCHLVEQLE 246
            S +  E   LVL G+  LLLG L           L  LP   P ++VRVL+AF+A+Q  AG+LT+E+ + V  LVE+LE
Sbjct:  589 SMSHAEGTDLVLGGHCALLLGLLVRDQERNRRLALPVLPNGDPTLIVRVLEAFMALQFQAGVLTEELVLAVQGLVEELE 667
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BLAST of mRNA_P-wetherbeei_contig1592.2.1 vs. uniprot
Match: A0A6H5JF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF40_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.400e-7
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   10 SFTQVEVDALVLSGYACLLLGCLACGGGPPAEATLAALPRRSPRVVVRVLQAFVAMQQHAGILTKEMAVPVCHLVEQLE 246
            S +  E   LVL G+  LLLG L           L  LP   P ++VRVL+AF+A+Q  AG+LT+E+ + V  LVE+LE
Sbjct:  754 SMSHAEGTDLVLGGHCALLLGLLVRDQERNRRLALPVLPNGDPTLIVRVLEAFMALQFQAGVLTEELVLAVQGLVEELE 832
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1592.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z8W4_9STRA1.840e-1247.50WAPL domain-containing protein n=1 Tax=Tribonema m... [more]
D7FW36_ECTSI1.400e-743.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF40_9PHAE1.400e-743.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1592contigP-wetherbeei_contig1592:1247..1492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000020122
PFAMsWAPL
Model size246
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-06
EggNOG OGs2BYMS@1|root,2S2HN@2759|Eukaryota,1MGYP@121069|Pythiales
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.2868893-CDS-P-wetherbeei_contig1592:1246..14921683186071.2868893-CDS-P-wetherbeei_contig1592:1246..1492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1592 1247..1492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1592.2.1prot_P-wetherbeei_contig1592.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1592 1247..1492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1592.2.1

>prot_P-wetherbeei_contig1592.2.1 ID=prot_P-wetherbeei_contig1592.2.1|Name=mRNA_P-wetherbeei_contig1592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
EADSFTQVEVDALVLSGYACLLLGCLACGGGPPAEATLAALPRRSPRVVV
RVLQAFVAMQQHAGILTKEMAVPVCHLVEQLE
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mRNA from alignment at P-wetherbeei_contig1592:1247..1492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1592.2.1 ID=mRNA_P-wetherbeei_contig1592.2.1|Name=mRNA_P-wetherbeei_contig1592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:1247..1492+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGATTCGTTTACGCAAGTGGAGGTGGACGCGCTCGTCTTGTCGGG
TTACGCCTGTCTGCTGCTCGGGTGCCTCGCCTGCGGCGGCGGCCCGCCGG
CGGAGGCGACGCTGGCGGCTCTGCCGCGGCGGTCGCCGAGAGTCGTGGTG
CGCGTCCTCCAGGCGTTTGTAGCGATGCAGCAGCACGCCGGCATCCTGAC
GAAGGAGATGGCGGTGCCTGTCTGCCACTTGGTGGAGCAGCTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1592:1247..1492+

>mRNA_P-wetherbeei_contig1592.2.1 ID=mRNA_P-wetherbeei_contig1592.2.1|Name=mRNA_P-wetherbeei_contig1592.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig1592:1247..1492+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCGATTCGTTTACGCAAGTGGAGGTGGACGCGCTCGTCTTGTCGGG
TTACGCCTGTCTGCTGCTCGGGTGCCTCGCCTGCGGCGGCGGCCCGCCGG
CGGAGGCGACGCTGGCGGCTCTGCCGCGGCGGTCGCCGAGAGTCGTGGTG
CGCGTCCTCCAGGCGTTTGTAGCGATGCAGCAGCACGCCGGCATCCTGAC
GAAGGAGATGGCGGTGCCTGTCTGCCACTTGGTGGAGCAGCTCGAG
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