mRNA_P-wetherbeei_contig15918.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15918.1.1
Unique NamemRNA_P-wetherbeei_contig15918.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: D7FGY0_ECTSI (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGY0_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.210e-36
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRA+AKNKGRISRVLANKCAIASRIDSF DEP+TKYG+ELR Q
Sbjct:  331 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRAAAKNKGRISRVLANKCAIASRIDSFSDEPSTKYGDELREQ 403
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A7R9WK73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK73_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.520e-36
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKTKGNTPKYG+IYHSTFIGRA AKNKGRISR LANKC+IA+RIDSF D+PT+ YGE+LR Q
Sbjct:   77 ILGAEKALFRALKTKGNTPKYGLIYHSTFIGRADAKNKGRISRYLANKCSIATRIDSFADDPTSAYGEKLREQ 149
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A7S1U4K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4K6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.210e-35
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKTKGNTPKYG+IYHSTFIGRA+AK+KGRISR LANKCAIASRIDSFIDEPTTKYGE +R Q
Sbjct:  335 ILGAEKALFRALKTKGNTPKYGLIYHSTFIGRAAAKDKGRISRYLANKCAIASRIDSFIDEPTTKYGEMMRDQ 407
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A6V1P0N8_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0N8_HETAK)

HSP 1 Score: 137 bits (344), Expect = 2.340e-35
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKTKGNTPKYG+IYHSTFIGRA+AKNKGRISR LANKCAIASRIDSFI+EPTT YGE+LR Q
Sbjct:  267 ILGAEKALFRALKTKGNTPKYGLIYHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIEEPTTLYGEKLRDQ 339
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A7S3L9V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9V2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.690e-35
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKTKGNTPKYG+IYHSTFIGRA AKNKGRISR LANKC+IA+RIDSF DEP+  YGE+LR Q
Sbjct:   13 ILGAEKALFRALKTKGNTPKYGLIYHSTFIGRADAKNKGRISRYLANKCSIATRIDSFSDEPSRLYGEKLRDQ 85
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A7S2CNL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNL1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.220e-35
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALK KGNTPKYG+IYHSTFIGRA+ KNKGRISR LANKCAIASRIDSFI+EPTTKYGE LR+Q
Sbjct:  334 ILGAEKALFRALKKKGNTPKYGLIYHSTFIGRAATKNKGRISRYLANKCAIASRIDSFIEEPTTKYGESLRSQ 406
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A7R8VBA7_TIMDO (Hypothetical protein n=1 Tax=Timema douglasi TaxID=61478 RepID=A0A7R8VBA7_TIMDO)

HSP 1 Score: 128 bits (322), Expect = 6.990e-35
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKT+GNTPKYG++YHSTFIGRA AKNKGRISR LANKC+IASRID FIDEPT  +G++LR Q
Sbjct:   63 ILGAEKALFRALKTRGNTPKYGLLYHSTFIGRAGAKNKGRISRYLANKCSIASRIDCFIDEPTKVFGQKLRQQ 135
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BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: K3WJW5_GLOUD (Nop domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJW5_GLOUD)

HSP 1 Score: 136 bits (342), Expect = 7.740e-35
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKT+GNTPKYG+++HSTFIGRA+AKNKGRISR LANKCAIASRIDSFIDEPTTKYG+++R Q
Sbjct:  329 ILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQ 401
[Close]
BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A024GD12_9STRA (Nop domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GD12_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.490e-35
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKT+GNTPKYG+++HSTFIGRA+AKNKGRISR LANKCAIASRIDSFIDEPTTK+GE++R Q
Sbjct:  338 ILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKFGEQMREQ 410
[Close]
BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Match: A0A662WHM0_9STRA (Nop domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHM0_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.490e-35
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCAIASRIDSFIDEPTTKYGEELRAQ 219
            ILGAEKALFRALKT+GNTPKYG+++HSTFIGRA+AKNKGRISR LANKCAIASRIDSFIDEPTTKYG+++R Q
Sbjct:  325 ILGAEKALFRALKTRGNTPKYGLLFHSTFIGRAAAKNKGRISRYLANKCAIASRIDSFIDEPTTKYGDKMREQ 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15918.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGY0_ECTSI1.210e-3693.15Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9WK73_9STRA9.520e-3684.93Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1U4K6_9STRA2.210e-3590.41Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6V1P0N8_HETAK2.340e-3590.41Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3L9V2_9STRA2.690e-3584.93Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2CNL1_9STRA3.220e-3589.04Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R8VBA7_TIMDO6.990e-3582.19Hypothetical protein n=1 Tax=Timema douglasi TaxID... [more]
K3WJW5_GLOUD7.740e-3586.30Nop domain-containing protein n=1 Tax=Globisporang... [more]
A0A024GD12_9STRA8.490e-3586.30Nop domain-containing protein n=2 Tax=Albugo TaxID... [more]
A0A662WHM0_9STRA8.490e-3586.30Nop domain-containing protein n=2 Tax=Nothophytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15918contigP-wetherbeei_contig15918:89..1131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FGY0
PFAMsNOP5NT,Nop
Model size481
Max annot lvl2759|Eukaryota
KEGG koko:K14564
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons3
Evalue1.27e-38
EggNOG OGsCOG1498@1|root,KOG2573@2759|Eukaryota
DescriptionsnoRNA binding
Cds size243
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.2034698-CDS-P-wetherbeei_contig15918:88..3311683186071.2034698-CDS-P-wetherbeei_contig15918:88..331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15918 89..331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.217601-UTR-P-wetherbeei_contig15918:331..3441683186071.217601-UTR-P-wetherbeei_contig15918:331..344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15918 332..344 +
1683186071.2252202-UTR-P-wetherbeei_contig15918:679..8441683186071.2252202-UTR-P-wetherbeei_contig15918:679..844Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15918 680..844 +
1683186071.2328942-UTR-P-wetherbeei_contig15918:1071..11311683186071.2328942-UTR-P-wetherbeei_contig15918:1071..1131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15918 1072..1131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15918.1.1prot_P-wetherbeei_contig15918.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15918 89..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15918.1.1

>prot_P-wetherbeei_contig15918.1.1 ID=prot_P-wetherbeei_contig15918.1.1|Name=mRNA_P-wetherbeei_contig15918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
ILGAEKALFRALKTKGNTPKYGIIYHSTFIGRASAKNKGRISRVLANKCA
IASRIDSFIDEPTTKYGEELRAQESRKGRD*
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mRNA from alignment at P-wetherbeei_contig15918:89..1131+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15918.1.1 ID=mRNA_P-wetherbeei_contig15918.1.1|Name=mRNA_P-wetherbeei_contig15918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-wetherbeei_contig15918:89..1131+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTGGGCGCGGAGAAGGCGCTGTTCCGGGCGCTCAAGACGAAGGGCAA
CACACCGAAGTACGGCATCATCTACCACTCGACATTCATCGGGCGGGCGT
CGGCCAAGAACAAGGGCCGCATCTCGCGCGTGCTCGCTAACAAGTGCGCC
ATCGCAAGCCGCATCGACTCCTTCATCGACGAGCCCACTACTAAATATGG
CGAGGAGCTCCGCGCACAGGAAAGCAGAAAGGGGCGGGATTGATAGAGAC
GGGCAGGTGGATTTTTCGTAGTCGTTCTTCTTTGTTTTGATAGCTTTCTG
ACGTTCCAGCCAGAAGGCATGCTGCTTGCATGCCGACGCCAATGCAAACG
CGGCGGCGGCGCTCTGCGATGCTTTGCTGTTCCGTGTCCATTAGGTTTTT
TGGAGTTTTCTTCGATGTTTAACCTCTCATCGGTCACATCCTTCCTCGCC
TTCTTGCTCTTACCTTCATTCTTGCCTTTTCCTTTGCCGCCGCCGCCATC
GCCGCCCCGGCTGCTGCTCGGGGACTCGCCGTTACCTTCCTTCCATCGGT
TGCCCGCCCTCGTCAATGTGTTGACATCTGCCTGCATGCAGGTGGAGGAG
CGGCTCAAGTTCTACGACACGGGAGAGGCGCCCCGCAAGAACATCGACGT
CATGAAGGGCGTCGCCGACTCGATGAAGGCCACTGCCGCCGCCGCCGCCG
CCGCCTCTGGGGAGGGGGAGGCGGCCGCACAGGGCGACGGGGACAAGAAG
AAGAAGGTGCGTTGGAAGCGGACCGGTTTTGCGAGCTGGAAGCGGGCTTT
GCGGAAGGGAATCATTTGGGTGGCGTTCTCGAAGCGCTTGCTCTCTTAAA
AGTTTGCTGGGCGAGGGAACACCGAAATTATGAAAGTGTTGTCGCGCAAG
CGTTACAACAACAGTAAGATCATATGCCATTTTTGGTCACTCTCTGCTCC
CATGGCCGGCACGAATCGCTGATCACGCAGAAGAAGGACAAGAAGAAGCG
GAAGCGGGAGAGCGAGGGAGCTCGGGCGGGCAGCGACGACAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15918:89..1131+

>mRNA_P-wetherbeei_contig15918.1.1 ID=mRNA_P-wetherbeei_contig15918.1.1|Name=mRNA_P-wetherbeei_contig15918.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig15918:89..1131+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTGGGCGCGGAGAAGGCGCTGTTCCGGGCGCTCAAGACGAAGGGCAA
CACACCGAAGTACGGCATCATCTACCACTCGACATTCATCGGGCGGGCGT
CGGCCAAGAACAAGGGCCGCATCTCGCGCGTGCTCGCTAACAAGTGCGCC
ATCGCAAGCCGCATCGACTCCTTCATCGACGAGCCCACTACTAAATATGG
CGAGGAGCTCCGCGCACAGGAAAGCAGAAAGGGGCGGGATTGA
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