mRNA_P-wetherbeei_contig15914.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15914.1.1
Unique NamemRNA_P-wetherbeei_contig15914.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A7S2UUZ3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUZ3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.750e-27
Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:  184 VSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQV 423
            +SW DIK+VQ LIERCLQ+Y +Q EI+  L+ QANVDP FT  VW KLEEQNPEFFY Y+++L+L DQI+A+N+LV++Q+
Sbjct:   18 ISWNDIKMVQALIERCLQQYMTQPEIITALQVQANVDPSFTCLVWQKLEEQNPEFFYTYSIRLRLKDQIVAFNYLVNQQL 97          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: D7G7H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 7.260e-27
Identity = 52/87 (59.77%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  175 DGPVSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQ 435
            D  VSW DIK VQ LIERCLQK+ +Q EI+A L+ +ANVDP FT  VW KLE+QNPEFF++Y+ +L++ DQI+A+N+LVD+QV  ++
Sbjct:   76 DSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSFTCLVWQKLEQQNPEFFFSYHARLKMRDQIVAFNYLVDQQVYLIR 162          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A835YZS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.220e-26
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 1
Query:  184 VSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQHMQAA 450
            V W DIK+VQ LIERCL ++ +Q ++VATL +QAN+DP FT  VW KLEEQNPEFFY Y V++ + DQI+++N+LV+ Q+  +Q + AA
Sbjct:   30 VKWDDIKMVQTLIERCLNQFMTQSQVVATLVQQANIDPSFTCLVWQKLEEQNPEFFYTYGVRVTMRDQILSFNYLVERQLELMQQLNAA 118          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A6H5LJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJM5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.300e-26
Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 1
Query:  139 AAAARHDDVLHLDGPVSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQ 435
            A+  R +D    D  VSW DIK VQ LIERCLQK+ +Q EI+A L+ +ANVDP FT  VW KLE+QNPEFF++Y+ +L++ DQI+A+N+LVD+QV  ++
Sbjct:   69 ASGGRSED----DSNVSWNDIKSVQNLIERCLQKFMTQTEIIAALQVEANVDPSFTCLVWQKLEQQNPEFFFSYHARLKMRDQIVAFNYLVDQQVYLIR 163          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A7S3ZKS9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKS9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.580e-26
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  178 GPVSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQHMQAAVAQRA 465
            G  +W  +K VQ LIERCL +Y +Q E++ATL+ QA+VDP  T  VW+KLEE NP+FF +Y+V+L+L DQ++A+N+LV++Q   LQ +  A+ Q++
Sbjct:    8 GSYTWTQVKSVQNLIERCLNQYMTQAEVIATLQVQADVDPALTCLVWSKLEEANPDFFLSYDVRLKLKDQVVAFNYLVEQQTRLLQKLTLALPQQS 103          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A1W0A900_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A900_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.650e-24
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  187 SWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQ 420
            SW +I  VQ LIERCLQ+  SQE+I+  L+ QAN+DP+FT +VW KLEEQNP FFYAY   L+L DQI+ +N+LV +Q
Sbjct:   18 SWNEILRVQNLIERCLQQCMSQEDIIVALQNQANIDPNFTRTVWQKLEEQNPSFFYAYTTHLKLKDQILMFNYLVSQQ 95          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: I0YS27_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YS27_COCSC)

HSP 1 Score: 98.6 bits (244), Expect = 3.440e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1
Query:  184 VSWKDIKVVQGLIERCLQKYKSQEEIVA-TLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQHMQ 444
            VS +DI++VQ LIERCLQ Y SQ E+V  TL++QA ++P FT  VW KLEEQNP+FF AY  +L+L DQI+ +N L+++QV   Q MQ
Sbjct:   50 VSTQDIQLVQNLIERCLQMYMSQREVVVFTLQQQAQIEPGFTQLVWQKLEEQNPDFFRAYYTRLKLKDQIVLFNHLLEQQVAMFQKMQ 137          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A8J9RL91_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RL91_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 3.500e-23
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  184 VSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQHMQ 444
            VS +DI++VQ LIERCLQ Y SQ E+V TL++QA ++P FT  VW KLEEQNP+FF AY  +L+L DQI+ +N L+++QV   Q MQ
Sbjct:   50 VSTQDIQLVQNLIERCLQMYMSQREVVFTLQQQAQIEPGFTQLVWQKLEEQNPDFFRAYYTRLKLKDQIVLFNHLLEQQVAMFQKMQ 136          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: A0A329SSC1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SSC1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.940e-23
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  187 SWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQ----------VCFLQHMQAAVAQRAEVSC 477
            SW DI  VQ LIERCLQ+Y S+ +I+ TL+EQANVDP FT  VW KLEEQNP FF AY++QLQL +QI+A+N+LV +Q          +    +M  + A RA   C
Sbjct:  237 SWNDILRVQNLIERCLQQYLSKNDILITLKEQANVDPAFTNVVWQKLEEQNPRFFRAYSLQLQLKEQIIAFNYLVGQQKEMAAKGGKRLLHYSNMNRSSANRASAPC 343          
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Match: W2ICX8_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2ICX8_PHYPR)

HSP 1 Score: 102 bits (255), Expect = 7.890e-23
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1
Query:  187 SWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPHFTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQ 420
            SW DI  VQ LIERCLQ+Y S+ +I+ TL+EQANVDP FT  VW KLEEQNP FF AY++QLQL +QI+A+N+LV +Q
Sbjct:  207 SWNDILRVQNLIERCLQQYLSKNDILITLKEQANVDPAFTNVVWQKLEEQNPTFFRAYSLQLQLKEQIIAFNYLVGQQ 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UUZ3_9STRA2.750e-2763.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G7H7_ECTSI7.260e-2759.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZS3_9STRA3.220e-2656.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LJM5_9PHAE4.300e-2655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZKS9_9STRA5.580e-2650.00Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1W0A900_9STRA1.650e-2460.26Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
I0YS27_COCSC3.440e-2356.82Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9RL91_9CHLO3.500e-2357.47Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A329SSC1_9STRA3.940e-2352.34Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2ICX8_PHYPR7.890e-2365.38Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15914contigP-wetherbeei_contig15914:37..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7H7
PFAMsA_thal_3526
Model size495
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.19e-27
EggNOG OGs28IH3@1|root,2QQTW@2759|Eukaryota
Ec32 ortholog descriptionConserved hypothetical protein CHP01589, plant
Ec32 orthologEc-02_000320.1
DescriptionPlant protein 1589 of unknown function (A_thal_3526)
Cds size495
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186071.043377-CDS-P-wetherbeei_contig15914:36..1681683186071.043377-CDS-P-wetherbeei_contig15914:36..168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15914 37..168 +
1683186071.0568078-CDS-P-wetherbeei_contig15914:270..4201683186071.0568078-CDS-P-wetherbeei_contig15914:270..420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15914 271..420 +
1683186071.065948-CDS-P-wetherbeei_contig15914:621..6751683186071.065948-CDS-P-wetherbeei_contig15914:621..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15914 622..675 +
1683186071.0756416-CDS-P-wetherbeei_contig15914:982..10331683186071.0756416-CDS-P-wetherbeei_contig15914:982..1033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15914 983..1033 +
1683186071.084487-CDS-P-wetherbeei_contig15914:1225..13331683186071.084487-CDS-P-wetherbeei_contig15914:1225..1333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15914 1226..1333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15914.1.1prot_P-wetherbeei_contig15914.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15914 37..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15914.1.1

>prot_P-wetherbeei_contig15914.1.1 ID=prot_P-wetherbeei_contig15914.1.1|Name=mRNA_P-wetherbeei_contig15914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
ETESNKRDRLEVEMVVAGSMQTARAPRTKKTPGVKPPRKTAASRRKAAAA
RHDDVLHLDGPVSWKDIKVVQGLIERCLQKYKSQEEIVATLEEQANVDPH
FTMSVWAKLEEQNPEFFYAYNVQLQLLDQIMAYNFLVDEQVCFLQHMQAA
VAQRAEVSCFRTGH*
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mRNA from alignment at P-wetherbeei_contig15914:37..1333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15914.1.1 ID=mRNA_P-wetherbeei_contig15914.1.1|Name=mRNA_P-wetherbeei_contig15914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1297bp|location=Sequence derived from alignment at P-wetherbeei_contig15914:37..1333+ (Phaeothamnion wetherbeei SAG_119_79)
GAAACGGAAAGCAATAAAAGGGACCGGTTGGAAGTGGAAATGGTGGTTGC AGGGAGTATGCAGACGGCACGTGCGCCCAGGACAAAGAAGACTCCGGGGG TGAAGCCGCCAAGGAAAACCGCAGCATCCAGGGTAGGTAAAGCTGCCTCA TCTATTTTAAACGCAATGAGACGGAGCAGAGCCTCTAAGCGCATTCTCGG TGTTCCATCCTCGCACTTTCTTGTGAACTTGCAGCGAAAGGCGGCTGCCG CTAGGCACGATGATGTCTTGCACCTCGACGGACCGGTCTCGTGGAAAGAC ATCAAGGTCGTGCAAGGCCTGATCGAGCGCTGCCTGCAAAAGTACAAATC GCAGGAAGAAATCGTCGCCACGCTAGAAGAGCAGGTCAGACGCCCATCAA CATTGTGACGTGATAGCGCTACCTGTCAGCGAATCTTGCATACCGTCCTG GTCTCCCTCGGGCTTTCTTTTGCCTTATTTCTTGCTTCGTTCACCTGGGC GCCGCCTTCCAGTCAAATGCCATTGCTGCAGACTCATCTTTGTTTTGTAC CTCTTTTGCTCCGTTTCCACTTTATTATCCGATAGGCGAATGTAGACCCG CACTTCACGATGAGCGTCTGGGCAAAACTCGAGGAGCAGGTAACGCAACA TCTTTCCGAGCACGCTGGCGTAAACACGTCAGATAAATTTTCCGGCTGTT CTTGCGAAATTGTTTTCCCCTCCTCGGCAGCGTGTGCTTGCCGGGAAAGA AAACTGGTCCACCCTTCAAACGGTTGTTTGTCATTTGATTCAAACGGCTG TCTGGCGGATCGAAGAAACAACGCAGCGCTTTCCTGTTTTGGAACCACTC ACTGGCGTTCTGACACTCTTCTCTCAACCTTCTTCTGGCTCGATTTGGAC TGGCTCGATTTGGACTACGAACTTCTCCTCCTTACTCTTGCGGCAGAACC CGGAATTCTTCTACGCCTACAACGTCCAGCTGCAGCTCCTCGACCAGGCG AGTGCTGAAGCAAACGCCGCAGGCGGCAGTGGCATTGCGGCAAAAAAAGC TGGCTGATTTTGCACCTCCATGCTGTCGCTGCGTCCGCCCCTCCTCAGAT ACGCTTATCTCGCATATGCATCTGGCCTCTGTCGTTTCTGTTGTCTCCAC GAGCCAACCGACGCTGCGACCTTGCCTTTCAACAAACAGATCATGGCCTA CAACTTTTTAGTGGACGAACAGGTCTGCTTCCTGCAGCACATGCAGGCCG CCGTTGCGCAGCGGGCCGAAGTGAGCTGCTTTCGCACGGGTCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15914:37..1333+

>mRNA_P-wetherbeei_contig15914.1.1 ID=mRNA_P-wetherbeei_contig15914.1.1|Name=mRNA_P-wetherbeei_contig15914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig15914:37..1333+ (Phaeothamnion wetherbeei SAG_119_79)
GAAACGGAAAGCAATAAAAGGGACCGGTTGGAAGTGGAAATGGTGGTTGC
AGGGAGTATGCAGACGGCACGTGCGCCCAGGACAAAGAAGACTCCGGGGG
TGAAGCCGCCAAGGAAAACCGCAGCATCCAGGCGAAAGGCGGCTGCCGCT
AGGCACGATGATGTCTTGCACCTCGACGGACCGGTCTCGTGGAAAGACAT
CAAGGTCGTGCAAGGCCTGATCGAGCGCTGCCTGCAAAAGTACAAATCGC
AGGAAGAAATCGTCGCCACGCTAGAAGAGCAGGCGAATGTAGACCCGCAC
TTCACGATGAGCGTCTGGGCAAAACTCGAGGAGCAGAACCCGGAATTCTT
CTACGCCTACAACGTCCAGCTGCAGCTCCTCGACCAGATCATGGCCTACA
ACTTTTTAGTGGACGAACAGGTCTGCTTCCTGCAGCACATGCAGGCCGCC
GTTGCGCAGCGGGCCGAAGTGAGCTGCTTTCGCACGGGTCACTGA
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