mRNA_P-wetherbeei_contig1591.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1591.5.1
Unique NamemRNA_P-wetherbeei_contig1591.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A2G8K4W0_STIJA (Putative transient receptor potential cation channel subfamily A member 1-like isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K4W0_STIJA)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   10 RQKSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQ 144
            R  ST+LH ++E G + I++LLLESGA VDA+N D+ T LH A Q
Sbjct:  176 RYDSTALHVASEKGFLAIMKLLLESGADVDAKNEDELTPLHMAAQ 220
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A7K6X7L9_9PASE (ANK2 protein (Fragment) n=1 Tax=Promerops cafer TaxID=254652 RepID=A0A7K6X7L9_9PASE)

HSP 1 Score: 52.0 bits (123), Expect = 2.420e-6
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   16 KSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQV 147
            + T+LH +AENGH +++ LLL  GAA++A +S + TALH AC+ 
Sbjct:  393 RKTALHVAAENGHGELINLLLSHGAAINASDSSRDTALHCACRA 436
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: B2GU85_XENTR (LOC100158526 protein n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=B2GU85_XENTR)

HSP 1 Score: 51.6 bits (122), Expect = 3.350e-6
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   13 QKSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFA 138
            +KS+ LH + +NG++D+V+  +  GA +D R SD ATALHFA
Sbjct:  244 EKSSPLHLAVQNGNIDVVKACISYGAKIDLRQSDNATALHFA 285
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: UPI001454FB5B (transient receptor potential cation channel subfamily A member 1 homolog isoform X1 n=3 Tax=Asterias rubens TaxID=7604 RepID=UPI001454FB5B)

HSP 1 Score: 50.8 bits (120), Expect = 6.280e-6
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 RQKSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFA 138
            R  +T LH +AE G++ IV++LLE GA+++A+N ++ TALH A
Sbjct:  624 RYNNTPLHIAAEKGYIQIVKILLERGASLEAKNEEEQTALHLA 666
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A2J6T247_9HELO (Ankyrin (Fragment) n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6T247_9HELO)

HSP 1 Score: 48.5 bits (114), Expect = 7.350e-6
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   19 STSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFA 138
            +T+LH+++ENGH+++VR+L+E GA +D RN    T  H A
Sbjct:   19 NTALHYASENGHLEVVRVLIERGAGIDGRNKRGETPSHLA 58
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: UPI001D0876F9 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0876F9)

HSP 1 Score: 49.7 bits (117), Expect = 1.550e-5
Identity = 21/43 (48.84%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 RQKSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFA 138
            + KST+LH +A+ G VDI+++LLE+GA +DA++  + T LH+A
Sbjct:  151 KSKSTALHEAAKTGRVDIIKILLENGADIDAKDEAEQTPLHWA 193
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: UPI00200CC87D (ankyrin repeat domain-containing protein 39 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200CC87D)

HSP 1 Score: 48.5 bits (114), Expect = 2.130e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:   22 TSLHFSAENGHVDIVRLLLESGAAVDARNSDQAT 123
            T+LH++A NGHVDI R LLE+GA VDA+ S  AT
Sbjct:   66 TALHYAARNGHVDICRTLLETGACVDAQTSGMAT 99
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A5J9V7P2_9POAL (RING-type domain-containing protein n=11 Tax=PACMAD clade TaxID=147370 RepID=A0A5J9V7P2_9POAL)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   19 STSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQ 144
            +T LHF+A  GH+DIV LLLE GA V+ARN    TAL  AC+
Sbjct:   46 NTPLHFAAAKGHLDIVTLLLEKGADVNARNYCGQTALMHACR 87
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A1V9ZV16_9STRA (Ankyrin 2,3/unc44 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV16_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   22 TSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQ 144
            T+LHFSAENGH  +V LL++ GA +D RN +  T L  AC+
Sbjct:    2 TALHFSAENGHDQVVELLVKKGATLDMRNEEGETPLLLACR 42
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BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Match: A0A813K714_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K714_POLGL)

HSP 1 Score: 49.3 bits (116), Expect = 2.190e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   19 STSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQ 144
            +T+LH +A+ GH+D+V LLL SGA   A   D+ TALHFA Q
Sbjct:  493 TTALHAAAQQGHIDLVALLLASGAEPGACRDDRLTALHFAAQ 534
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1591.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8K4W0_STIJA1.310e-655.56Putative transient receptor potential cation chann... [more]
A0A7K6X7L9_9PASE2.420e-650.00ANK2 protein (Fragment) n=1 Tax=Promerops cafer Ta... [more]
B2GU85_XENTR3.350e-650.00LOC100158526 protein n=2 Tax=Xenopus tropicalis Ta... [more]
UPI001454FB5B6.280e-648.84transient receptor potential cation channel subfam... [more]
A0A2J6T247_9HELO7.350e-647.50Ankyrin (Fragment) n=1 Tax=Hyaloscypha bicolor E T... [more]
UPI001D0876F91.550e-548.84serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI00200CC87D2.130e-564.71ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A5J9V7P2_9POAL2.180e-559.52RING-type domain-containing protein n=11 Tax=PACMA... [more]
A0A1V9ZV16_9STRA2.180e-553.66Ankyrin 2,3/unc44 n=1 Tax=Thraustotheca clavata Ta... [more]
A0A813K714_POLGL2.190e-554.76Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1591contigP-wetherbeei_contig1591:6736..6894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog8364.ENSXETP00000034881
Preferred nameTRPA1
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ion_trans
Model size159
Max annot lvl33208|Metazoa
KEGG koko:K04984
KEGG TC1.A.4.6.1,1.A.4.6.2,1.A.4.6.3,1.A.4.6.5
KEGG Pathwayko04750,map04750
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0001580,GO:0002791,GO:0002793,GO:0003008,GO:0003012,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005216,GO:0005217,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006936,GO:0006939,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007204,GO:0007600,GO:0007602,GO:0007606,GO:0007610,GO:0007638,GO:0008150,GO:0008324,GO:0009266,GO:0009314,GO:0009408,GO:0009409,GO:0009410,GO:0009416,GO:0009453,GO:0009581,GO:0009582,GO:0009583,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009719,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010243,GO:0010378,GO:0010646,GO:0010647,GO:0010817,GO:0014070,GO:0014074,GO:0014832,GO:0014848,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016048,GO:0016324,GO:0019233,GO:0019722,GO:0019725,GO:0019932,GO:0022607,GO:0022803,GO:0022832,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023041,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030424,GO:0031000,GO:0031224,GO:0031226,GO:0031644,GO:0031646,GO:0032024,GO:0032421,GO:0032501,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033555,GO:0034220,GO:0034605,GO:0034702,GO:0034703,GO:0035556,GO:0035690,GO:0035774,GO:0036270,GO:0038023,GO:0040011,GO:0040040,GO:0042221,GO:0042330,GO:0042331,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042752,GO:0042802,GO:0042995,GO:0043005,GO:0043052,GO:0043269,GO:0043270,GO:0043279,GO:0043933,GO:0044057,GO:0044070,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0046677,GO:0046873,GO:0046883,GO:0046887,GO:0046957,GO:0048265,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050848,GO:0050850,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050909,GO:0050912,GO:0050913,GO:0050951,GO:0050954,GO:0050955,GO:0050960,GO:0050961,GO:0050965,GO:0050966,GO:0050968,GO:0050974,GO:0050982,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051209,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051262,GO:0051282,GO:0051283,GO:0051289,GO:0051480,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051930,GO:0051931,GO:0051969,GO:0052129,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060089,GO:0060341,GO:0060401,GO:0060402,GO:0061178,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071244,GO:0071310,GO:0071312,GO:0071313,GO:0071407,GO:0071415,GO:0071417,GO:0071466,GO:0071495,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0072511,GO:0090087,GO:0090276,GO:0090277,GO:0097458,GO:0097553,GO:0097603,GO:0097604,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098862,GO:0098900,GO:0098908,GO:0099094,GO:0099604,GO:0120025,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902495,GO:1902531,GO:1902533,GO:1903522,GO:1903530,GO:1903532,GO:1903793,GO:1904058,GO:1904951,GO:1990351,GO:1990760
Exons1
Evalue5.49e-07
EggNOG OGsCOG0666@1|root,KOG0510@2759|Eukaryota,38G7Q@33154|Opisthokonta,3BCDU@33208|Metazoa,3D0P6@33213|Bilateria,4896E@7711|Chordata,491BV@7742|Vertebrata
DescriptionTransient receptor potential cation channel, subfamily A, member
Cds size159
COG categoryS
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.9819853-CDS-P-wetherbeei_contig1591:6735..68941683186070.9819853-CDS-P-wetherbeei_contig1591:6735..6894Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1591 6736..6894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1591.5.1prot_P-wetherbeei_contig1591.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1591 6736..6894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1591.5.1

>prot_P-wetherbeei_contig1591.5.1 ID=prot_P-wetherbeei_contig1591.5.1|Name=mRNA_P-wetherbeei_contig1591.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
PFQRQKSTSLHFSAENGHVDIVRLLLESGAAVDARNSDQATALHFACQVK
SK*
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mRNA from alignment at P-wetherbeei_contig1591:6736..6894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1591.5.1 ID=mRNA_P-wetherbeei_contig1591.5.1|Name=mRNA_P-wetherbeei_contig1591.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig1591:6736..6894+ (Phaeothamnion wetherbeei SAG_119_79)
CCATTCCAACGGCAAAAGTCGACGTCGTTGCACTTTTCGGCAGAAAATGG
GCATGTGGACATTGTTCGATTGCTCCTCGAGTCGGGAGCGGCAGTCGACG
CCCGCAACAGTGACCAAGCGACGGCCCTTCATTTCGCGTGCCAGGTAAAG
TCTAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1591:6736..6894+

>mRNA_P-wetherbeei_contig1591.5.1 ID=mRNA_P-wetherbeei_contig1591.5.1|Name=mRNA_P-wetherbeei_contig1591.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig1591:6736..6894+ (Phaeothamnion wetherbeei SAG_119_79)
CCATTCCAACGGCAAAAGTCGACGTCGTTGCACTTTTCGGCAGAAAATGG
GCATGTGGACATTGTTCGATTGCTCCTCGAGTCGGGAGCGGCAGTCGACG
CCCGCAACAGTGACCAAGCGACGGCCCTTCATTTCGCGTGCCAGGTAAAG
TCTAAGTAG
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