mRNA_P-wetherbeei_contig159.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig159.8.1
Unique NamemRNA_P-wetherbeei_contig159.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig159.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig159contigP-wetherbeei_contig159:11730..12880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1151
Hectar predicted targeting categoryother localisation
Exons1
Cds size993
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.3832817-UTR-P-wetherbeei_contig159:11729..117881683186070.3832817-UTR-P-wetherbeei_contig159:11729..11788Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig159 11730..11788 +
1683186070.4100583-UTR-P-wetherbeei_contig159:12781..128801683186070.4100583-UTR-P-wetherbeei_contig159:12781..12880Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig159 12782..12880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.3940904-CDS-P-wetherbeei_contig159:11788..127811683186070.3940904-CDS-P-wetherbeei_contig159:11788..12781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig159 11789..12781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig159.8.1prot_P-wetherbeei_contig159.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig159 11789..12781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig159.8.1

>prot_P-wetherbeei_contig159.8.1 ID=prot_P-wetherbeei_contig159.8.1|Name=mRNA_P-wetherbeei_contig159.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=331bp
MAEWEPIVAINPRRAARNLHRQRKTLQVAALPTRPPPRQHQGRLKRAVAA
KRKDIAIAGLLPTKKALPHVADAPPEVLFSTKQPAPALSEARPLEGAWYP
LWQHALADMQFSQAFAKPAKNKWGHSIDAVTRERQRSCDDPPSPPPRLKG
RLTRRPFQRRTVENFKDKRDDSGSADNKGTPRPPEPTVQQVLSQVPQQRR
RRLRRMLADIEASLSRLADNNESTVRECDITFVGGGTGGKKPAPPSGGRK
ASANGNDGHAVANPSRGRRRSNTTQACGSSRASLQCSDCDLGDESHDASS
WESDILESGGAIDAPPLEGEREGAAVFSAV*
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mRNA from alignment at P-wetherbeei_contig159:11730..12880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig159.8.1 ID=mRNA_P-wetherbeei_contig159.8.1|Name=mRNA_P-wetherbeei_contig159.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1151bp|location=Sequence derived from alignment at P-wetherbeei_contig159:11730..12880+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAAATGGCTGAAAAATCATTTGTATAAAGAAACGCGATGGCCCGCGC
AGCCACGAGATGGCGGAATGGGAGCCAATTGTCGCCATCAACCCGCGAAG
AGCCGCTCGAAACCTGCACAGACAAAGAAAAACGTTGCAGGTGGCTGCCC
TTCCGACGCGACCTCCACCACGACAGCATCAAGGAAGGCTGAAAAGGGCT
GTTGCAGCTAAAAGGAAGGATATTGCCATTGCAGGACTCCTGCCGACCAA
GAAAGCATTGCCGCATGTCGCGGATGCGCCGCCAGAGGTCCTCTTCTCGA
CAAAACAGCCCGCGCCAGCACTCTCAGAAGCGAGGCCACTGGAGGGAGCG
TGGTACCCTCTTTGGCAGCACGCCTTGGCAGATATGCAGTTTTCTCAAGC
TTTCGCAAAGCCTGCTAAAAACAAATGGGGCCATTCCATAGACGCAGTCA
CGAGGGAGCGGCAGCGCAGCTGTGATGATCCGCCATCGCCACCACCGAGG
CTCAAAGGACGGCTGACCAGGCGACCATTCCAGCGCCGCACCGTGGAGAA
TTTCAAGGACAAGAGAGACGACAGCGGCTCAGCAGACAACAAGGGGACGC
CACGGCCGCCTGAACCGACAGTGCAGCAGGTGCTGAGCCAGGTGCCGCAG
CAGCGCCGTCGCAGGCTGCGCCGGATGCTCGCCGACATTGAGGCGTCTCT
CTCCCGACTTGCCGATAACAACGAATCGACTGTGAGGGAGTGCGACATCA
CGTTTGTGGGCGGCGGTACCGGCGGCAAGAAGCCCGCACCGCCAAGCGGC
GGTCGGAAAGCCAGTGCAAACGGCAACGACGGGCACGCCGTCGCAAATCC
AAGTCGCGGCCGCCGCCGCAGCAACACGACGCAAGCATGTGGAAGCAGCC
GCGCATCACTCCAATGCAGCGATTGTGATCTCGGTGACGAGAGCCATGAC
GCCTCCTCGTGGGAGAGCGACATCCTGGAAAGCGGCGGCGCGATAGATGC
GCCGCCGCTAGAGGGAGAGCGCGAAGGCGCCGCCGTGTTTAGTGCTGTCT
AAGGGCCCACAGACCCTGTGGAAAGTTTGCTTCTTCTCGGGCGCCAGGGG
AAGGAAGGCTACGGCGCCCGATTTTGACAAGCTTCACATATCTAAAGAGA
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig159:11730..12880+

>mRNA_P-wetherbeei_contig159.8.1 ID=mRNA_P-wetherbeei_contig159.8.1|Name=mRNA_P-wetherbeei_contig159.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=993bp|location=Sequence derived from alignment at P-wetherbeei_contig159:11730..12880+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAATGGGAGCCAATTGTCGCCATCAACCCGCGAAGAGCCGCTCG
AAACCTGCACAGACAAAGAAAAACGTTGCAGGTGGCTGCCCTTCCGACGC
GACCTCCACCACGACAGCATCAAGGAAGGCTGAAAAGGGCTGTTGCAGCT
AAAAGGAAGGATATTGCCATTGCAGGACTCCTGCCGACCAAGAAAGCATT
GCCGCATGTCGCGGATGCGCCGCCAGAGGTCCTCTTCTCGACAAAACAGC
CCGCGCCAGCACTCTCAGAAGCGAGGCCACTGGAGGGAGCGTGGTACCCT
CTTTGGCAGCACGCCTTGGCAGATATGCAGTTTTCTCAAGCTTTCGCAAA
GCCTGCTAAAAACAAATGGGGCCATTCCATAGACGCAGTCACGAGGGAGC
GGCAGCGCAGCTGTGATGATCCGCCATCGCCACCACCGAGGCTCAAAGGA
CGGCTGACCAGGCGACCATTCCAGCGCCGCACCGTGGAGAATTTCAAGGA
CAAGAGAGACGACAGCGGCTCAGCAGACAACAAGGGGACGCCACGGCCGC
CTGAACCGACAGTGCAGCAGGTGCTGAGCCAGGTGCCGCAGCAGCGCCGT
CGCAGGCTGCGCCGGATGCTCGCCGACATTGAGGCGTCTCTCTCCCGACT
TGCCGATAACAACGAATCGACTGTGAGGGAGTGCGACATCACGTTTGTGG
GCGGCGGTACCGGCGGCAAGAAGCCCGCACCGCCAAGCGGCGGTCGGAAA
GCCAGTGCAAACGGCAACGACGGGCACGCCGTCGCAAATCCAAGTCGCGG
CCGCCGCCGCAGCAACACGACGCAAGCATGTGGAAGCAGCCGCGCATCAC
TCCAATGCAGCGATTGTGATCTCGGTGACGAGAGCCATGACGCCTCCTCG
TGGGAGAGCGACATCCTGGAAAGCGGCGGCGCGATAGATGCGCCGCCGCT
AGAGGGAGAGCGCGAAGGCGCCGCCGTGTTTAGTGCTGTCTAA
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