mRNA_P-wetherbeei_contig159.7.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig159.7.2
Unique NamemRNA_P-wetherbeei_contig159.7.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig159.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig159contigP-wetherbeei_contig159:9395..11547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1947
Hectar predicted targeting categoryother localisation
Exons2
Cds size1800
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.3262928-UTR-P-wetherbeei_contig159:9394..95411683186070.3262928-UTR-P-wetherbeei_contig159:9394..9541Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig159 9395..9541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186070.337483-CDS-P-wetherbeei_contig159:9541..96351683186070.337483-CDS-P-wetherbeei_contig159:9541..9635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig159 9542..9635 -
1683186070.3486629-CDS-P-wetherbeei_contig159:9841..115471683186070.3486629-CDS-P-wetherbeei_contig159:9841..11547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig159 9842..11547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig159.7.2prot_P-wetherbeei_contig159.7.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig159 9542..11547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig159.7.2

>prot_P-wetherbeei_contig159.7.2 ID=prot_P-wetherbeei_contig159.7.2|Name=mRNA_P-wetherbeei_contig159.7.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=600bp
MLEDDAKDRGLKRPLGAGDEVHIEHKRVAMEPDGNGNPTVEDVAAATARV
ELNATPRAVDDTSGKAKRAASSSFSAADAKQQEGEKSTTAPGKRLQVPAA
TGVAEEKGRAKSVAPEEGSKMKSGTALSGFGFGAAAAAAGFGSSGGGASS
QSPFAAAAAAAAGESTGWGKPPANGSGSSGGIFATRGGFSSFGGGGGSTA
GFGASPGGRGSGGSGGGGASSDGWSAATAASTPDRDGAHLGWGSYGGGGG
SSSGAGWGDMEAGGGGGGGGSGGGWSNGAAAAAADNGDGDGIPAAPPSPP
TVAMAFCTDTEGEEEVVSVGPCTLLELTDGAWKERGVGMVRIWELRAGFD
DDGGDAGNGGRGGGDGGGESLREGAANSSSDVDNGGDVEVGASSAGKDGG
GGNGGGNEGSGGSVGEKDAAGSDGSGGARGDGEKSDVNGVGARGSGSGGS
KSGGDQNGRGRDSKATFVTAAGPAAAASPVAAASSSAAADAAPATAATAT
APAAATLAAAGPSGDIAKRASRRVVFKVRNTGKLRLNAKLSSCGAVQLQE
GTRSKLLFRCKISETDWTTYCVKLNTATHEAQQHAAPLRDAMNIGLPPA*
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mRNA from alignment at P-wetherbeei_contig159:9395..11547-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig159.7.2 ID=mRNA_P-wetherbeei_contig159.7.2|Name=mRNA_P-wetherbeei_contig159.7.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2153bp|location=Sequence derived from alignment at P-wetherbeei_contig159:9395..11547- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGAGGACGACGCAAAGGACAGGGGCCTCAAGCGCCCACTAGGCGC
GGGCGATGAGGTGCACATAGAGCACAAAAGGGTTGCCATGGAACCCGACG
GGAATGGGAACCCAACGGTGGAAGATGTGGCAGCTGCCACCGCTCGAGTC
GAGCTGAACGCGACGCCCAGAGCAGTCGATGACACTTCGGGCAAGGCCAA
AAGAGCAGCAAGCTCGAGCTTCAGCGCTGCGGATGCCAAGCAGCAGGAGG
GAGAAAAGTCGACCACAGCACCGGGAAAGCGACTCCAGGTTCCTGCAGCA
ACAGGTGTAGCAGAGGAGAAGGGACGCGCGAAGTCCGTCGCGCCCGAAGA
AGGAAGCAAAATGAAGAGCGGCACTGCCCTCTCTGGCTTCGGCTTTGGCG
CCGCCGCGGCAGCTGCCGGGTTTGGCAGCAGTGGCGGCGGGGCCAGCAGC
CAAAGCCCCTTTGCAGCTGCCGCCGCGGCCGCTGCAGGAGAATCTACCGG
TTGGGGAAAGCCACCTGCCAACGGCTCGGGCAGCTCGGGTGGCATTTTTG
CTACGCGTGGCGGTTTTTCGAGCTTTGGCGGCGGCGGCGGCAGCACTGCT
GGTTTTGGCGCTTCGCCAGGCGGGAGAGGCAGCGGCGGCAGCGGCGGCGG
CGGCGCCTCCTCCGATGGATGGTCCGCTGCAACCGCCGCGTCGACGCCGG
ACCGTGATGGGGCGCATTTGGGCTGGGGAAGCTACGGCGGTGGTGGCGGG
AGCAGCAGCGGAGCCGGCTGGGGAGATATGGAGGCGGGCGGCGGCGGCGG
CGGCGGTGGCAGCGGCGGCGGCTGGAGTAACGGCGCAGCCGCCGCAGCCG
CGGACAACGGCGACGGCGATGGAATTCCCGCAGCGCCGCCGAGCCCGCCG
ACCGTGGCCATGGCCTTCTGCACCGACACGGAGGGCGAGGAGGAGGTGGT
GTCCGTCGGGCCATGCACGCTGCTCGAGCTGACGGACGGCGCCTGGAAAG
AGCGCGGCGTTGGCATGGTCAGAATTTGGGAGCTGCGTGCCGGTTTCGAC
GACGACGGGGGAGATGCCGGCAACGGCGGCCGCGGGGGCGGCGACGGCGG
CGGCGAAAGCCTTAGAGAGGGCGCCGCAAACAGCAGCAGCGACGTTGACA
ACGGTGGAGACGTGGAGGTCGGCGCCTCCAGCGCCGGCAAGGATGGCGGC
GGCGGCAACGGTGGCGGAAACGAAGGTAGCGGTGGCAGCGTTGGCGAGAA
GGATGCAGCTGGCAGCGATGGCAGCGGCGGCGCGAGAGGCGACGGCGAAA
AGAGTGACGTCAACGGAGTGGGTGCCCGGGGCAGTGGTAGTGGCGGCAGC
AAGAGCGGTGGCGACCAAAACGGGAGAGGACGCGACTCCAAGGCAACTTT
CGTCACGGCTGCTGGTCCCGCTGCCGCCGCCTCTCCCGTCGCCGCCGCCT
CCTCTTCTGCCGCCGCCGACGCAGCTCCCGCCACTGCCGCCACCGCCACC
GCGCCCGCCGCCGCCACTCTCGCCGCCGCCGGACCGAGCGGCGACATCGC
AAAGCGGGCGTCGCGGCGGGTGGTCTTCAAGGTCCGCAACACGGGCAAGC
TGCGGCTCAACGCCAAGCTGAGCAGCTGCGGAGCGGTCCAGCTGCAGGAG
GGGACGCGCAGCAAGCTCTTATTCCGCTGCAAGATCTCGGAGACCGACTG
GACCACGTGCGTCAGCTATTTTTTCGACATCATGGCTGCCAGGCGTGGGA
AAGTTCGGGTTTTCGAGTTTCTTTTGGCGGGAGGCGGAAGCGTTGCTTTG
TTTTTCCTTCTGCGATCTCTTTGCAGTGCTGTGCTGCCATGGCTTACCCT
CCGCTGCTGCTGCCGCGGTTCTGTTTCCATCTTTCCGTTCGTGCCCTGCC
CGCCGAATGCAGGTACTGCGTGAAATTGAATACAGCCACTCATGAGGCGC
AGCAGCACGCGGCACCGCTGCGAGACGCCATGAACATTGGCCTTCCGCCC
GCTTGAAGACAGGGAGTGCTACTGCGGCCGCTGAGATCCTGATCGCCGCG
CCTCAGCGGGCGCCGGCAGCGGTGGCACTCGGCGGCGGCACTCGGCGGCG
GCGGCCGCGGCAGTGACAGCATCTTTTTGCGGAGCGCCCGGCTGGGGAAA
AAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig159:9395..11547-

>mRNA_P-wetherbeei_contig159.7.2 ID=mRNA_P-wetherbeei_contig159.7.2|Name=mRNA_P-wetherbeei_contig159.7.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1800bp|location=Sequence derived from alignment at P-wetherbeei_contig159:9395..11547- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGAGGACGACGCAAAGGACAGGGGCCTCAAGCGCCCACTAGGCGC
GGGCGATGAGGTGCACATAGAGCACAAAAGGGTTGCCATGGAACCCGACG
GGAATGGGAACCCAACGGTGGAAGATGTGGCAGCTGCCACCGCTCGAGTC
GAGCTGAACGCGACGCCCAGAGCAGTCGATGACACTTCGGGCAAGGCCAA
AAGAGCAGCAAGCTCGAGCTTCAGCGCTGCGGATGCCAAGCAGCAGGAGG
GAGAAAAGTCGACCACAGCACCGGGAAAGCGACTCCAGGTTCCTGCAGCA
ACAGGTGTAGCAGAGGAGAAGGGACGCGCGAAGTCCGTCGCGCCCGAAGA
AGGAAGCAAAATGAAGAGCGGCACTGCCCTCTCTGGCTTCGGCTTTGGCG
CCGCCGCGGCAGCTGCCGGGTTTGGCAGCAGTGGCGGCGGGGCCAGCAGC
CAAAGCCCCTTTGCAGCTGCCGCCGCGGCCGCTGCAGGAGAATCTACCGG
TTGGGGAAAGCCACCTGCCAACGGCTCGGGCAGCTCGGGTGGCATTTTTG
CTACGCGTGGCGGTTTTTCGAGCTTTGGCGGCGGCGGCGGCAGCACTGCT
GGTTTTGGCGCTTCGCCAGGCGGGAGAGGCAGCGGCGGCAGCGGCGGCGG
CGGCGCCTCCTCCGATGGATGGTCCGCTGCAACCGCCGCGTCGACGCCGG
ACCGTGATGGGGCGCATTTGGGCTGGGGAAGCTACGGCGGTGGTGGCGGG
AGCAGCAGCGGAGCCGGCTGGGGAGATATGGAGGCGGGCGGCGGCGGCGG
CGGCGGTGGCAGCGGCGGCGGCTGGAGTAACGGCGCAGCCGCCGCAGCCG
CGGACAACGGCGACGGCGATGGAATTCCCGCAGCGCCGCCGAGCCCGCCG
ACCGTGGCCATGGCCTTCTGCACCGACACGGAGGGCGAGGAGGAGGTGGT
GTCCGTCGGGCCATGCACGCTGCTCGAGCTGACGGACGGCGCCTGGAAAG
AGCGCGGCGTTGGCATGGTCAGAATTTGGGAGCTGCGTGCCGGTTTCGAC
GACGACGGGGGAGATGCCGGCAACGGCGGCCGCGGGGGCGGCGACGGCGG
CGGCGAAAGCCTTAGAGAGGGCGCCGCAAACAGCAGCAGCGACGTTGACA
ACGGTGGAGACGTGGAGGTCGGCGCCTCCAGCGCCGGCAAGGATGGCGGC
GGCGGCAACGGTGGCGGAAACGAAGGTAGCGGTGGCAGCGTTGGCGAGAA
GGATGCAGCTGGCAGCGATGGCAGCGGCGGCGCGAGAGGCGACGGCGAAA
AGAGTGACGTCAACGGAGTGGGTGCCCGGGGCAGTGGTAGTGGCGGCAGC
AAGAGCGGTGGCGACCAAAACGGGAGAGGACGCGACTCCAAGGCAACTTT
CGTCACGGCTGCTGGTCCCGCTGCCGCCGCCTCTCCCGTCGCCGCCGCCT
CCTCTTCTGCCGCCGCCGACGCAGCTCCCGCCACTGCCGCCACCGCCACC
GCGCCCGCCGCCGCCACTCTCGCCGCCGCCGGACCGAGCGGCGACATCGC
AAAGCGGGCGTCGCGGCGGGTGGTCTTCAAGGTCCGCAACACGGGCAAGC
TGCGGCTCAACGCCAAGCTGAGCAGCTGCGGAGCGGTCCAGCTGCAGGAG
GGGACGCGCAGCAAGCTCTTATTCCGCTGCAAGATCTCGGAGACCGACTG
GACCACGTACTGCGTGAAATTGAATACAGCCACTCATGAGGCGCAGCAGC
ACGCGGCACCGCTGCGAGACGCCATGAACATTGGCCTTCCGCCCGCTTGA
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