mRNA_P-wetherbeei_contig15840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15840.1.1
Unique NamemRNA_P-wetherbeei_contig15840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15840contigP-wetherbeei_contig15840:215..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size718
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionProtein of unknown function DUF872, transmembrane
Ec32 orthologEc-00_006650.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.1085813-UTR-P-wetherbeei_contig15840:214..5271683186069.1085813-UTR-P-wetherbeei_contig15840:214..527Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15840 215..527 +
1683186069.137947-UTR-P-wetherbeei_contig15840:1098..11341683186069.137947-UTR-P-wetherbeei_contig15840:1098..1134Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15840 1099..1134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186069.117395-CDS-P-wetherbeei_contig15840:527..7341683186069.117395-CDS-P-wetherbeei_contig15840:527..734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15840 528..734 +
1683186069.1276958-CDS-P-wetherbeei_contig15840:936..10981683186069.1276958-CDS-P-wetherbeei_contig15840:936..1098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15840 937..1098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15840.1.1prot_P-wetherbeei_contig15840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15840 528..1098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15840.1.1

>prot_P-wetherbeei_contig15840.1.1 ID=prot_P-wetherbeei_contig15840.1.1|Name=mRNA_P-wetherbeei_contig15840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MRIQDQGDDEDDFIPVQSAGMASFHITQAPREPKPRPPRPGSVLFERPSE
GRMAVRTCILGACLLLLGLSMLLTALTFWRKGHDGSLAFLLLGIFATLPG
CYAMAQTLDRWRRGQNLNYESV*
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mRNA from alignment at P-wetherbeei_contig15840:215..1134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15840.1.1 ID=mRNA_P-wetherbeei_contig15840.1.1|Name=mRNA_P-wetherbeei_contig15840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=920bp|location=Sequence derived from alignment at P-wetherbeei_contig15840:215..1134+ (Phaeothamnion wetherbeei SAG_119_79)
TTAAAAGATACAGAGAGAGAGAAACGGGCGCCATAAGGTGCCGGACCTGC
TTTCTGCTTGTACTTTCTGCATTAGCCTGCTGGCGAGAGAAAGAGTTGAG
GAACAGTGAAAAGAAGCGACCTCTTTTCCCAAACTCCTCTATCTGGGAAG
CAATTGGCATCGAAAAAGGGGAGCAAAGCCCACCTCCCACAAAGCAACGT
GCAGATCAATTCCCGGAGGAGGAGACAGTTTCGGAAATTCCACGGGGTTT
GCACACCGAGCCGAGATATCCTTTCGCCGCTGCTGTTGTGAGAAGTTGTC
ACTGATCTCCATCATGCGCATTCAAGACCAAGGAGACGACGAAGATGACT
TCATTCCCGTACAATCAGCAGGGATGGCTAGCTTCCATATTACTCAGGCG
CCCCGCGAGCCCAAACCTAGGCCGCCCCGTCCGGGTTCCGTGCTTTTTGA
GCGACCAAGTGAAGGGAGGATGGCGGTACGAACATGCATCCTGGGGGCAT
GCCTGCTGCTACTCGGACTGGTAAGACTATGCCCTCCCTCTTCTTCCCTG
GCTACAATCATTTGCCGGCTGTGATGGTTGAATGCGAGAACGCAGTTTGT
ATTCGCACCTAAATGCTTCGTTCAGTGTTCGCTGCCATGTTAATGCACTA
GTTTAACTGAATTGAAGTGAACCCTCGCTTCCCCCGGTCCGCTCTGTACC
CTTCCCCCTTCCGAAAATGCAGTCGATGCTGCTCACGGCATTGACATTCT
GGCGAAAAGGCCACGACGGCTCTCTGGCGTTCTTGTTGCTCGGGATATTT
GCGACTCTTCCTGGATGTTACGCCATGGCGCAAACGCTCGACAGATGGCG
AAGAGGACAAAATCTTAATTACGAGAGCGTGTAAAATAGCGAAGATTACA
ATTTTGACCAAAAAACGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15840:215..1134+

>mRNA_P-wetherbeei_contig15840.1.1 ID=mRNA_P-wetherbeei_contig15840.1.1|Name=mRNA_P-wetherbeei_contig15840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig15840:215..1134+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCATTCAAGACCAAGGAGACGACGAAGATGACTTCATTCCCGTACA
ATCAGCAGGGATGGCTAGCTTCCATATTACTCAGGCGCCCCGCGAGCCCA
AACCTAGGCCGCCCCGTCCGGGTTCCGTGCTTTTTGAGCGACCAAGTGAA
GGGAGGATGGCGGTACGAACATGCATCCTGGGGGCATGCCTGCTGCTACT
CGGACTGTCGATGCTGCTCACGGCATTGACATTCTGGCGAAAAGGCCACG
ACGGCTCTCTGGCGTTCTTGTTGCTCGGGATATTTGCGACTCTTCCTGGA
TGTTACGCCATGGCGCAAACGCTCGACAGATGGCGAAGAGGACAAAATCT
TAATTACGAGAGCGTGTAA
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