mRNA_P-wetherbeei_contig15802.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15802.2.1
Unique NamemRNA_P-wetherbeei_contig15802.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15802.2.1 vs. uniprot
Match: A0A6M5YPG3_9BACT (Uncharacterized protein n=2 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YPG3_9BACT)

HSP 1 Score: 224 bits (572), Expect = 1.480e-72
Identity = 108/118 (91.53%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:    1 LAFSRDGSRLAVRRDQQIRVYETGGKTLAAVPFPRTDLHRTVPVLPRPGRAPVPHVAFSPDGGQVAVGHGRALAVHHAVTGEGRFHHGELPDEVTGVAFAPGGRWLYVGRRDGSLVPY 354
            LAFSRDG+RLAVRRDQQIR+YETGGKTLAAVPFPRTD++RTVPV+PRPGRAP P VAFSPDGGQVAVG+GRALAVHHAVTGEGRFH GELPDEVTGVAFAPGGRWLYVGRRDGSLV Y
Sbjct:   69 LAFSRDGARLAVRRDQQIRIYETGGKTLAAVPFPRTDIYRTVPVIPRPGRAPAPQVAFSPDGGQVAVGYGRALAVHHAVTGEGRFHDGELPDEVTGVAFAPGGRWLYVGRRDGSLVAY 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15802.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6M5YPG3_9BACT1.480e-7291.53Uncharacterized protein n=2 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15802contigP-wetherbeei_contig15802:1220..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.1300826-CDS-P-wetherbeei_contig15802:1219..15731683186068.1300826-CDS-P-wetherbeei_contig15802:1219..1573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15802 1220..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15802.2.1prot_P-wetherbeei_contig15802.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15802 1220..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15802.2.1

>prot_P-wetherbeei_contig15802.2.1 ID=prot_P-wetherbeei_contig15802.2.1|Name=mRNA_P-wetherbeei_contig15802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
LAFSRDGSRLAVRRDQQIRVYETGGKTLAAVPFPRTDLHRTVPVLPRPGR
APVPHVAFSPDGGQVAVGHGRALAVHHAVTGEGRFHHGELPDEVTGVAFA
PGGRWLYVGRRDGSLVPY
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mRNA from alignment at P-wetherbeei_contig15802:1220..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15802.2.1 ID=mRNA_P-wetherbeei_contig15802.2.1|Name=mRNA_P-wetherbeei_contig15802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig15802:1220..1573+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGTTCAGCCGCGACGGCTCGCGGCTCGCGGTTCGTCGGGACCAGCA
GATCCGCGTCTACGAAACCGGCGGGAAGACGCTCGCGGCGGTCCCGTTCC
CGCGAACGGACCTCCACCGCACGGTTCCCGTGCTCCCGCGCCCCGGGCGC
GCGCCGGTGCCGCACGTCGCGTTCTCGCCGGACGGCGGGCAGGTCGCGGT
GGGGCACGGGCGGGCGCTCGCGGTCCACCACGCGGTCACCGGCGAGGGCC
GGTTCCACCACGGGGAGTTGCCCGACGAGGTGACCGGCGTCGCGTTCGCC
CCCGGCGGCCGGTGGCTGTACGTCGGGCGCCGCGACGGCTCCCTCGTCCC
GTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15802:1220..1573+

>mRNA_P-wetherbeei_contig15802.2.1 ID=mRNA_P-wetherbeei_contig15802.2.1|Name=mRNA_P-wetherbeei_contig15802.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig15802:1220..1573+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGTTCAGCCGCGACGGCTCGCGGCTCGCGGTTCGTCGGGACCAGCA
GATCCGCGTCTACGAAACCGGCGGGAAGACGCTCGCGGCGGTCCCGTTCC
CGCGAACGGACCTCCACCGCACGGTTCCCGTGCTCCCGCGCCCCGGGCGC
GCGCCGGTGCCGCACGTCGCGTTCTCGCCGGACGGCGGGCAGGTCGCGGT
GGGGCACGGGCGGGCGCTCGCGGTCCACCACGCGGTCACCGGCGAGGGCC
GGTTCCACCACGGGGAGTTGCCCGACGAGGTGACCGGCGTCGCGTTCGCC
CCCGGCGGCCGGTGGCTGTACGTCGGGCGCCGCGACGGCTCCCTCGTCCC
GTAC
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