mRNA_P-wetherbeei_contig15802.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15802.1.1
Unique NamemRNA_P-wetherbeei_contig15802.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15802.1.1 vs. uniprot
Match: UPI00148EB8EA (hypothetical protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=UPI00148EB8EA)

HSP 1 Score: 120 bits (302), Expect = 3.830e-33
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = -2 
Query:  174 MHGPQHGPAQPSAFSVPTAPHPHTATRSLALPARRRYTRSGNTCHTGGRVFIFEAFTR 347
            MHGPQHGPAQPSAFSVPTAPHPHTA RS ALPARRRYTRSGNTCHTGGRVFIFEAFTR
Sbjct:    1 MHGPQHGPAQPSAFSVPTAPHPHTAMRSFALPARRRYTRSGNTCHTGGRVFIFEAFTR 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00148EB8EA3.830e-3396.55hypothetical protein n=1 Tax=Frigoriglobus tundric... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15802contigP-wetherbeei_contig15802:368..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1210884.HG799466_gene12757
PFAMsPkinase,WD40,YukD
Model size492
Max annot lvl2|Bacteria
KEGG koko:K12132
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.71e-23
EggNOG OGsCOG2319@1|root,COG2319@2|Bacteria
EC2.7.11.1
Descriptionanaphase-promoting complex binding
Cds size492
COG categoryS
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186068.1009943-CDS-P-wetherbeei_contig15802:367..8591683186068.1009943-CDS-P-wetherbeei_contig15802:367..859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15802 368..859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15802.1.1prot_P-wetherbeei_contig15802.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15802 368..859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15802.1.1

>prot_P-wetherbeei_contig15802.1.1 ID=prot_P-wetherbeei_contig15802.1.1|Name=mRNA_P-wetherbeei_contig15802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
KRVAARTASEPEGVEFWAAREAVATGFTGQVLVAWWTAVSGRRHVRVVGR
VVTPETGYLVNASKMNTRPPVWHVFPDRVYRRRAGRANDLVAVCGCGAVG
TEKALGWAGPCCGPCIDFQEEHGAPPPQRPALLRTPVPCLAVAASADGRW
VAGACADRVRLWDL
back to top

mRNA from alignment at P-wetherbeei_contig15802:368..859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15802.1.1 ID=mRNA_P-wetherbeei_contig15802.1.1|Name=mRNA_P-wetherbeei_contig15802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig15802:368..859+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGGTCGCCGCACGCACGGCGAGCGAACCCGAAGGCGTCGAGTTCTG
GGCCGCCCGCGAGGCCGTCGCCACCGGCTTCACCGGGCAGGTTCTCGTGG
CGTGGTGGACGGCGGTTTCCGGCCGGCGGCACGTGCGCGTTGTGGGCCGC
GTCGTCACGCCGGAAACGGGCTACCTCGTGAACGCCTCGAAGATGAACAC
CCGGCCGCCGGTGTGGCACGTGTTCCCGGACCGCGTGTACCGGCGCCGGG
CGGGCAGGGCCAACGATCTGGTCGCGGTGTGCGGGTGCGGGGCGGTCGGC
ACCGAGAAGGCGCTCGGCTGGGCCGGGCCGTGCTGCGGCCCGTGCATCGA
CTTTCAGGAGGAGCACGGCGCGCCCCCGCCGCAGCGGCCGGCGCTCTTGC
GGACGCCGGTCCCGTGCCTCGCCGTGGCCGCATCGGCGGACGGGCGGTGG
GTCGCCGGCGCGTGCGCCGATCGGGTGCGACTGTGGGACCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15802:368..859+

>mRNA_P-wetherbeei_contig15802.1.1 ID=mRNA_P-wetherbeei_contig15802.1.1|Name=mRNA_P-wetherbeei_contig15802.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig15802:368..859+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGGTCGCCGCACGCACGGCGAGCGAACCCGAAGGCGTCGAGTTCTG
GGCCGCCCGCGAGGCCGTCGCCACCGGCTTCACCGGGCAGGTTCTCGTGG
CGTGGTGGACGGCGGTTTCCGGCCGGCGGCACGTGCGCGTTGTGGGCCGC
GTCGTCACGCCGGAAACGGGCTACCTCGTGAACGCCTCGAAGATGAACAC
CCGGCCGCCGGTGTGGCACGTGTTCCCGGACCGCGTGTACCGGCGCCGGG
CGGGCAGGGCCAACGATCTGGTCGCGGTGTGCGGGTGCGGGGCGGTCGGC
ACCGAGAAGGCGCTCGGCTGGGCCGGGCCGTGCTGCGGCCCGTGCATCGA
CTTTCAGGAGGAGCACGGCGCGCCCCCGCCGCAGCGGCCGGCGCTCTTGC
GGACGCCGGTCCCGTGCCTCGCCGTGGCCGCATCGGCGGACGGGCGGTGG
GTCGCCGGCGCGTGCGCCGATCGGGTGCGACTGTGGGACCTG
back to top