mRNA_P-wetherbeei_contig1579.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1579.2.1
Unique NamemRNA_P-wetherbeei_contig1579.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A2K1IEB9_PHYPA (Fructose-bisphosphate aldolase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IEB9_PHYPA)

HSP 1 Score: 86.3 bits (212), Expect = 1.260e-18
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            ENW+ AQ+ LVALAKANS+AQLGKYKGPHPSPGG RILQ LRLGGAGK
Sbjct:  364 ENWQAAQERLVALAKANSDAQLGKYKGPHPSPGGQRILQALRLGGAGK 411
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A176W6T7_MARPO (Fructose-bisphosphate aldolase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W6T7_MARPO)

HSP 1 Score: 85.9 bits (211), Expect = 1.960e-18
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            ENW  AQ  LVALAKANSEAQLGKY GPHPSPGG RILQQLRLGGAGK
Sbjct:  393 ENWDAAQQRLVALAKANSEAQLGKYTGPHPSPGGTRILQQLRLGGAGK 440
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A1Y1IAZ2_KLENI (Fructose-bisphosphate aldolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAZ2_KLENI)

HSP 1 Score: 83.2 bits (204), Expect = 1.280e-17
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            EN + AQ+ LVALAKANSEAQLG YKGPHPSPGGGRILQ LRLGGAGK
Sbjct:  318 ENIQAAQERLVALAKANSEAQLGNYKGPHPSPGGGRILQALRLGGAGK 365
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A2P6TYN3_CHLSO (Fructose-bisphosphate aldolase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYN3_CHLSO)

HSP 1 Score: 82.4 bits (202), Expect = 2.870e-17
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            ENW  AQ +LVALAKANSEAQLG++KGPHP PGGGRILQ LR GGAGK
Sbjct:  345 ENWDAAQQILVALAKANSEAQLGQFKGPHPVPGGGRILQALRTGGAGK 392
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A2P6VEE0_9CHLO (Fructose-bisphosphate aldolase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEE0_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 7.260e-17
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAG 141
            ENW KAQ++L+ LAKANSEAQLG++KGPHP PGGGRILQ LR GGAG
Sbjct:  740 ENWDKAQEILIKLAKANSEAQLGQFKGPHPVPGGGRILQALRFGGAG 786
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A383VHG3_TETOB (Fructose-bisphosphate aldolase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VHG3_TETOB)

HSP 1 Score: 80.9 bits (198), Expect = 1.120e-16
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            ENW+ AQ +L++LA ANS+AQLG+YKGPHPSPGGGRILQ LR GGAGK
Sbjct:  363 ENWEAAQKVLLSLAAANSQAQLGQYKGPHPSPGGGRILQALRTGGAGK 410
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A8J9WTL5_9CHLO (Fructose-bisphosphate aldolase, cytoplasmic isozyme n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTL5_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 5.810e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            EN +KAQD+LV LAKANSEAQLG+YKGPHP PGG RILQ LR GGAGK
Sbjct:  383 ENKQKAQDILVKLAKANSEAQLGQYKGPHPVPGGQRILQALRTGGAGK 430
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A2V0NVL5_9CHLO (Fructose-bisphosphate aldolase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NVL5_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 7.030e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 ENWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            EN  KAQD+LV LA+ANS+AQLGKYKGPHP PGGGRILQ LR GG GK
Sbjct:  342 ENADKAQDILVQLARANSQAQLGKYKGPHPVPGGGRILQALRTGGPGK 389
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BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: D8U593_VOLCA (Fructose-bisphosphate aldolase n=3 Tax=Volvox TaxID=3066 RepID=D8U593_VOLCA)

HSP 1 Score: 78.6 bits (192), Expect = 7.140e-16
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 NWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            NW  AQD+LV LAKANSEA  GK+KGPHP PGGGRILQ LR GGAGK
Sbjct:  347 NWTAAQDILVKLAKANSEAAAGKFKGPHPVPGGGRILQALRTGGAGK 393
[Close]
BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Match: A0A7J7PID0_9CHLO (Fructose-bisphosphate aldolase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PID0_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.460e-15
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    4 NWKKAQDMLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK 144
            NW+ AQ +L++LA  NS+AQLG+YKGPHPSPGGGRILQ LR GGAGK
Sbjct:  372 NWEAAQKVLLSLAAVNSQAQLGQYKGPHPSPGGGRILQALRTGGAGK 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1579.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A2K1IEB9_PHYPA1.260e-1885.42Fructose-bisphosphate aldolase n=2 Tax=Physcomitri... [more]
A0A176W6T7_MARPO1.960e-1887.50Fructose-bisphosphate aldolase n=2 Tax=Marchantia ... [more]
A0A1Y1IAZ2_KLENI1.280e-1785.42Fructose-bisphosphate aldolase n=1 Tax=Klebsormidi... [more]
A0A2P6TYN3_CHLSO2.870e-1781.25Fructose-bisphosphate aldolase n=1 Tax=Chlorella s... [more]
A0A2P6VEE0_9CHLO7.260e-1778.72Fructose-bisphosphate aldolase n=1 Tax=Micractiniu... [more]
A0A383VHG3_TETOB1.120e-1677.08Fructose-bisphosphate aldolase n=1 Tax=Tetradesmus... [more]
A0A8J9WTL5_9CHLO5.810e-1681.25Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
A0A2V0NVL5_9CHLO7.030e-1679.17Fructose-bisphosphate aldolase n=1 Tax=Raphidoceli... [more]
D8U593_VOLCA7.140e-1678.72Fructose-bisphosphate aldolase n=3 Tax=Volvox TaxI... [more]
A0A7J7PID0_9CHLO1.460e-1574.47Fructose-bisphosphate aldolase n=1 Tax=Scenedesmus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1579contigP-wetherbeei_contig1579:1014..1160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S50_50V6.1
PFAMsGlycolytic,Got1
Model size147
Max annot lvl35493|Streptophyta
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004332,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons1
Evalue2.09e-15
EggNOG OGsCOG3588@1|root,KOG1557@2759|Eukaryota,37KBJ@33090|Viridiplantae,3GDDU@35493|Streptophyta
Ec32 ortholog descriptionfructose-1,6-bisphosphate aldolase
Ec32 orthologEc-01_008040.1
EC4.1.2.13
Descriptionfructose-bisphosphate aldolase
Cds size123
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.5544991-UTR-P-wetherbeei_contig1579:1013..10371683186067.5544991-UTR-P-wetherbeei_contig1579:1013..1037Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1579 1014..1037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.5672653-CDS-P-wetherbeei_contig1579:1037..11601683186067.5672653-CDS-P-wetherbeei_contig1579:1037..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1579 1038..1160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1579.2.1prot_P-wetherbeei_contig1579.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1579 1038..1160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1579.2.1

>prot_P-wetherbeei_contig1579.2.1 ID=prot_P-wetherbeei_contig1579.2.1|Name=mRNA_P-wetherbeei_contig1579.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MLVALAKANSEAQLGKYKGPHPSPGGGRILQQLRLGGAGK*
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mRNA from alignment at P-wetherbeei_contig1579:1014..1160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1579.2.1 ID=mRNA_P-wetherbeei_contig1579.2.1|Name=mRNA_P-wetherbeei_contig1579.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig1579:1014..1160+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAACTGGAAAAAGGCGCAGGACATGCTGGTGGCGCTGGCGAAGGCCAA
CTCGGAGGCGCAGCTCGGCAAGTACAAGGGGCCTCACCCATCCCCCGGCG
GCGGCCGCATCCTCCAGCAGCTGCGGCTGGGCGGCGCCGGCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1579:1014..1160+

>mRNA_P-wetherbeei_contig1579.2.1 ID=mRNA_P-wetherbeei_contig1579.2.1|Name=mRNA_P-wetherbeei_contig1579.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig1579:1014..1160+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGTGGCGCTGGCGAAGGCCAACTCGGAGGCGCAGCTCGGCAAGTA
CAAGGGGCCTCACCCATCCCCCGGCGGCGGCCGCATCCTCCAGCAGCTGC
GGCTGGGCGGCGCCGGCAAGTGA
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