mRNA_P-wetherbeei_contig15789.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15789.1.1
Unique NamemRNA_P-wetherbeei_contig15789.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15789.1.1 vs. uniprot
Match: A0A1H8YFW8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8YFW8_9PROT)

HSP 1 Score: 62.8 bits (151), Expect = 1.300e-10
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:   31 RVRLPAPARASVLAPLEAAPTASEIVGKSLSQGASDPNVPLPHPNLAEMSAE-GAVAGRTRLFGRADPGDGVLDFKGGLFGLTVPIPADRN 300
            + + PAP  A+     E  P+  E+V K+L+ GASDP+VPLP P+LA+ + E  A + + +++GR + G       GG+FGL +PIPA RN
Sbjct:   33 QTKAPAPTPAT-----ERGPSNVELVNKALNPGASDPDVPLPRPDLAKSNGERSASSSKPQIYGRQEEG-------GGVFGLRMPIPAVRN 111
[Close]
BLAST of mRNA_P-wetherbeei_contig15789.1.1 vs. uniprot
Match: A0A512NGK8_9HYPH (Uncharacterized protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NGK8_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 2.830e-9
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   79 EAAPTASEIVGKSLSQGASDPNVPLPHPNLAEMSAEG-AVAGRTRLFGRADPGDGVLDFKGGLFGLTVPIPADRN 300
            E  PT  E++ K+L+ GASDP+VPLPHP+LA  + +  A +   +++GR + G GVL       GL +P PADR+
Sbjct:   47 ERGPTNVELMNKALNPGASDPDVPLPHPDLARANPDQPASSSGPQIYGRQEQGGGVL-------GLRMPFPADRS 114
[Close]
BLAST of mRNA_P-wetherbeei_contig15789.1.1 vs. uniprot
Match: UPI001C239EEE (hypothetical protein n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C239EEE)

HSP 1 Score: 56.6 bits (135), Expect = 3.740e-8
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   91 TASEIVGKSLSQGASDPNVPLPHPNLAEM-----SAEGAVAGRTRLFGRADPGDGVLDFKGGLFGLTVPIPADRN 300
            TA+EIVGK L+ GAS+P+VPLPHP+L+E       + G + G T  +GR + G GVL F+       +PIP +R+
Sbjct:   26 TAAEIVGKLLAPGASNPDVPLPHPDLSEQFSARSESGGPLKGPTP-YGRPETGGGVLGFR-------MPIPVERS 92
[Close]
BLAST of mRNA_P-wetherbeei_contig15789.1.1 vs. uniprot
Match: A0A259MNK9_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MNK9_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 8.640e-7
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   91 TASEIVGKSLSQGASDPNVPLPHPNLAEMSAEGAVAGRTRL----FGRADPGDGVLDFKGGLFGLTVPIPADR 297
            T +E+  +SL+ GASDP+VPLPHP L+E  ++     R       FGR + G GVL       GL +P+PA R
Sbjct:   80 TPAELAARSLNPGASDPDVPLPHPGLSEEFSDRTDVARPLTGPTPFGRGESGGGVL-------GLRLPLPAQR 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15789.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1H8YFW8_9PROT1.300e-1041.76Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A512NGK8_9HYPH2.830e-944.00Uncharacterized protein n=1 Tax=Reyranella soli Ta... [more]
UPI001C239EEE3.740e-845.33hypothetical protein n=1 Tax=Reyranella sp. MMS21-... [more]
A0A259MNK9_9PROT8.640e-742.47Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15789contigP-wetherbeei_contig15789:352..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.4831848-CDS-P-wetherbeei_contig15789:351..6511683186067.4831848-CDS-P-wetherbeei_contig15789:351..651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15789 352..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15789.1.1prot_P-wetherbeei_contig15789.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15789 352..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15789.1.1

>prot_P-wetherbeei_contig15789.1.1 ID=prot_P-wetherbeei_contig15789.1.1|Name=mRNA_P-wetherbeei_contig15789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
VAAPVAKPKPRVRLPAPARASVLAPLEAAPTASEIVGKSLSQGASDPNVP
LPHPNLAEMSAEGAVAGRTRLFGRADPGDGVLDFKGGLFGLTVPIPADRN
back to top

mRNA from alignment at P-wetherbeei_contig15789:352..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15789.1.1 ID=mRNA_P-wetherbeei_contig15789.1.1|Name=mRNA_P-wetherbeei_contig15789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig15789:352..651- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCAGCGCCGGTCGCCAAGCCGAAGCCGCGGGTGCGCTTGCCGGCGCC
GGCCCGGGCGAGCGTGCTGGCGCCTCTCGAGGCGGCACCGACGGCGTCCG
AGATTGTGGGTAAGTCGCTCTCGCAGGGGGCATCGGACCCCAATGTGCCG
CTACCGCACCCGAATCTGGCCGAAATGTCGGCCGAGGGTGCCGTGGCCGG
CAGGACCAGATTGTTCGGCCGCGCCGATCCCGGGGACGGGGTTTTGGACT
TCAAGGGCGGCCTGTTCGGCCTGACCGTGCCCATTCCGGCCGATCGCAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15789:352..651-

>mRNA_P-wetherbeei_contig15789.1.1 ID=mRNA_P-wetherbeei_contig15789.1.1|Name=mRNA_P-wetherbeei_contig15789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig15789:352..651- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCAGCGCCGGTCGCCAAGCCGAAGCCGCGGGTGCGCTTGCCGGCGCC
GGCCCGGGCGAGCGTGCTGGCGCCTCTCGAGGCGGCACCGACGGCGTCCG
AGATTGTGGGTAAGTCGCTCTCGCAGGGGGCATCGGACCCCAATGTGCCG
CTACCGCACCCGAATCTGGCCGAAATGTCGGCCGAGGGTGCCGTGGCCGG
CAGGACCAGATTGTTCGGCCGCGCCGATCCCGGGGACGGGGTTTTGGACT
TCAAGGGCGGCCTGTTCGGCCTGACCGTGCCCATTCCGGCCGATCGCAAC
back to top