mRNA_P-wetherbeei_contig1576.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1576.4.1
Unique NamemRNA_P-wetherbeei_contig1576.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A6H5K350_9PHAE (Letm1 RBD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K350_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 2.930e-33
Identity = 79/176 (44.89%), Postives = 111/176 (63.07%), Query Frame = 1
Query:   13 PKSKPPTFGLLKPSDVEIEAIKDKSESGIKELEEEYRLYQRARREPAD---------PAGAEAKPDAAVIPAGKVATAL-KRAPAVAYDAAAAVLRFTWAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAV 510
            P+ +     LLKPSD EIE +KD+S    K+L+EEY LY+ AR++P           P G      + +    K A A+ K+ P + ++A  A++ F W ++ +P +L  K G A+  L    +HYW+G KLLW D+KTA+KIL+R+LRG  +TRRERKQLLRT SDIFR+VP+AV
Sbjct:  190 PRQRESLGDLLKPSDKEIEPVKDESAQRFKDLQEEYTLYEAARKDPKQASEQVCCLFPRGLSKVEQSQMALTRKKAVAMVKKIPVMTWNATKAIVLFLWEIIKNPIVLKDKLGVAQYHLKEFGRHYWLGLKLLWGDIKTAKKILRRILRGFPMTRRERKQLLRTVSDIFRMVPLAV 365          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A482T0K9_9ARCH (LETM1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0K9_9ARCH)

HSP 1 Score: 122 bits (307), Expect = 1.890e-31
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 1
Query:  283 VLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            ++++PR    K  EA   +     HYW+G+KLLW+++K    ILKRVL+G  +TRRER+QLLRTT+DIFR+VP AVF+IVPFMELLLP ALKLFPNMLPSTFQ
Sbjct:  110 IVMNPR----KTWEA---IKHEAHHYWMGTKLLWSEIKITTGILKRVLQGHGITRRERRQLLRTTTDIFRLVPFAVFIIVPFMELLLPFALKLFPNMLPSTFQ 205          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A8K1FJD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJD9_PYTOL)

HSP 1 Score: 129 bits (324), Expect = 3.800e-31
Identity = 68/124 (54.84%), Postives = 92/124 (74.19%), Query Frame = 1
Query:  220 LKRAPAVAYDAAAAVLRFTWAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            ++R P +  D A A+ R    +  DP  + A  G  +  + + L+HYW+GSKLL+ D+ T+ +IL+R+LRG+AL+RRERKQL RT +D+ R+VP A FVIVPFMELLLPVALK+FPNMLPSTF+
Sbjct:  190 IRRVPQLTVDGAKALGRGIQLIFTDPAAVKAWLGRLKDKVKAELKHYWVGSKLLYADVTTSTRILRRLLRGNALSRRERKQLQRTVADLVRLVPFAFFVIVPFMELLLPVALKMFPNMLPSTFK 313          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: B8BVV1_THAPS (Letm1 RBD domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVV1_THAPS)

HSP 1 Score: 122 bits (305), Expect = 1.830e-30
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  286 LLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            +  P+    K GE + A      HYW+GSKLL  D++TA+ IL R LRGS L+RRERKQLLRT +D+FR+VPM++FV+VPFME  LP ALKLFPNMLPSTFQ
Sbjct:    1 MTHPKEFRKKLGELKEAAVKEAHHYWMGSKLLAADIRTARHILGRTLRGSTLSRRERKQLLRTVTDVFRLVPMSIFVLVPFMEFALPFALKLFPNMLPSTFQ 102          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: K0R5T2_THAOC (LETM1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5T2_THAOC)

HSP 1 Score: 122 bits (306), Expect = 2.210e-30
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1
Query:  277 WAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            W  L  P  L +K  E +    +   HY++GSKLLW D++TA+ I+ R LRGS L+RRERKQL+RT +D+FR+VPM+VFV++PFME  LP ALK+FPNMLPSTFQ
Sbjct:  100 WFYLTHPSDLRSKLNEWKELAKAEAHHYYMGSKLLWADIRTARHIMARTLRGSTLSRRERKQLIRTATDVFRLVPMSVFVLIPFMEFALPFALKIFPNMLPSTFQ 204          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A5D6YNX5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YNX5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.430e-30
Identity = 66/124 (53.23%), Postives = 93/124 (75.00%), Query Frame = 1
Query:  220 LKRAPAVAYDAAAAVLRFTWAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            LKR P +  D A A++R    V  DP  + A   + +  + + L+HYW+G+KLL+ D+ T+ +IL+R++RG+AL+RRERKQL RT +D+ R+VP + F+IVPFMELLLPVALKLFPNMLPST++
Sbjct:  185 LKRVPRLTLDGAKALVRGVALVFTDPAAVKAWWAKTKEHIKAELKHYWLGTKLLYADVSTSTRILRRLVRGNALSRRERKQLQRTVADLLRLVPFSFFLIVPFMELLLPVALKLFPNMLPSTYK 308          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A7S2XKQ2_9STRA (Mitochondrial proton/calcium exchanger protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKQ2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.330e-30
Identity = 65/105 (61.90%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  277 WAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            W  L +PR   AK  E + A      HYW+G+KLL  D +TA+KI+ R L+GSALTRRERKQLLRT SD+FR+VPM++F+I+PFME  LP ALK+FPNMLPSTFQ
Sbjct:   97 WFYLTNPREFRAKLIELKEAAKKEAHHYWMGTKLLAADFRTARKIMMRTLQGSALTRRERKQLLRTVSDLFRLVPMSMFLIIPFMEFALPFALKIFPNMLPSTFQ 201          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A7S2KCP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCP3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.800e-30
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  277 WAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            W  L  P+ L  K  E +  +     HY++GSKLL  D++TA+ IL R L GS LTRRERKQL+RT SD+FR+VPM+VFV+VPFME LLP ALKLFPNMLPSTFQ
Sbjct:  123 WYFLTHPKELRVKLNEFKELVKKEANHYYMGSKLLVADIRTARTILLRTLNGSHLTRRERKQLVRTVSDVFRLVPMSVFVLVPFMEFLLPFALKLFPNMLPSTFQ 227          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A1W0ABY0_9STRA (LETM1 and EF-hand domain-containing protein 1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABY0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.990e-30
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1
Query:  205 KVATALKRAPAVAYDAAAAVLRFTWAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            K  + +K  PA+A  A   +  +   ++ +P+       E +  +   L+HYWIG+KLL+ D+ T+ +IL+R++RG+ALTRRERKQL RT +D+ R+VP A FVIVPFMELLLP ALK+FPNMLPST++
Sbjct:  116 KAVSFVKNTPAMAISALKTLKEWIRILIKEPQRAQTWLKETKEHIGHELKHYWIGTKLLYADVSTSTRILRRLVRGNALTRRERKQLQRTVADLLRLVPFAFFVIVPFMELLLPFALKMFPNMLPSTYK 244          
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Match: A0A024G0Q4_9STRA (Mitochondrial proton/calcium exchanger protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G0Q4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 8.420e-30
Identity = 65/124 (52.42%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  220 LKRAPAVAYDAAAAVLRFTWAVLLDPRLLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRRERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ 591
            LKR P +  DA  A+ R  + +  +P+ +A   G+ +  +   L HYW+G+KLL  D  T+ +I++RVL G+A++RRERKQL RT +D+ R+VP A FV+VPFMELLLPVALK+FPNMLPSTF+
Sbjct:  205 LKRTPQLTRDALRALCRGIYIIFREPQTVALYWGKLKEKVKKELHHYWLGTKLLCADTTTSTRIIRRVLHGNAISRRERKQLQRTVADLLRLVPFAFFVVVPFMELLLPVALKMFPNMLPSTFK 328          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1576.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K350_9PHAE2.930e-3344.89Letm1 RBD domain-containing protein n=1 Tax=Ectoca... [more]
A0A482T0K9_9ARCH1.890e-3163.11LETM1 domain-containing protein n=1 Tax=archaeon T... [more]
A0A8K1FJD9_PYTOL3.800e-3154.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B8BVV1_THAPS1.830e-3061.76Letm1 RBD domain-containing protein (Fragment) n=1... [more]
K0R5T2_THAOC2.210e-3058.10LETM1 domain-containing protein n=1 Tax=Thalassios... [more]
A0A5D6YNX5_9STRA2.430e-3053.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2XKQ2_9STRA3.330e-3061.90Mitochondrial proton/calcium exchanger protein n=1... [more]
A0A7S2KCP3_9STRA3.800e-3061.90Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1W0ABY0_9STRA6.990e-3049.61LETM1 and EF-hand domain-containing protein 1 (Fra... [more]
A0A024G0Q4_9STRA8.420e-3052.42Mitochondrial proton/calcium exchanger protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1576contigP-wetherbeei_contig1576:5437..6729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000023714
PFAMsEF-hand_8,LETM1
Model size591
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.09e-31
EggNOG OGsKOG1043@1|root,KOG1043@2759|Eukaryota,1MEJD@121069|Pythiales
DescriptionLETM1 and EF-hand domain-containing protein 1. Source PGD
Cds size591
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.5439627-CDS-P-wetherbeei_contig1576:5436..55141683186066.5439627-CDS-P-wetherbeei_contig1576:5436..5514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1576 5437..5514 +
1683186066.5548606-CDS-P-wetherbeei_contig1576:5908..60321683186066.5548606-CDS-P-wetherbeei_contig1576:5908..6032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1576 5909..6032 +
1683186066.5640328-CDS-P-wetherbeei_contig1576:6340..67291683186066.5640328-CDS-P-wetherbeei_contig1576:6340..6729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1576 6341..6729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1576.4.1prot_P-wetherbeei_contig1576.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1576 5437..6729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1576.4.1

>prot_P-wetherbeei_contig1576.4.1 ID=prot_P-wetherbeei_contig1576.4.1|Name=mRNA_P-wetherbeei_contig1576.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
MAQTPKSKPPTFGLLKPSDVEIEAIKDKSESGIKELEEEYRLYQRARREP
ADPAGAEAKPDAAVIPAGKVATALKRAPAVAYDAAAAVLRFTWAVLLDPR
LLAAKAGEARVALSSMLQHYWIGSKLLWNDMKTAQKILKRVLRGSALTRR
ERKQLLRTTSDIFRIVPMAVFVIVPFMELLLPVALKLFPNMLPSTFQ
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mRNA from alignment at P-wetherbeei_contig1576:5437..6729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1576.4.1 ID=mRNA_P-wetherbeei_contig1576.4.1|Name=mRNA_P-wetherbeei_contig1576.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1293bp|location=Sequence derived from alignment at P-wetherbeei_contig1576:5437..6729+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCAGACGCCAAAGAGCAAACCGCCAACTTTTGGCCTGCTGAAGCC ATCTGACGTTGAGATTGAGGCCATCAAGGTGAGTTGAAAGAGGGCGACGG GAACTCGAGTTGTGAGGACGCTTGAGTTTCAGACAGGATCCTGCTTTGCG GTCGCCTCTCTTCTTATTCAACCGCGTTCAAAACCTGCGGAGTCTTGCGG TGTGAAAAAGGGCTGTTCATTCCCATCAAGATTTGCTAGAGGGAATGACT GCCAGATGCAGTTTGGATTGGTCAGGGCGCCTGAGACGCTAACGTTCCAG ATTGCACGTTCCACGGCTTGTCTGCTCCAATAGCAGCGCATCTGGTCCCA CGAAAGTGACCCCCAGGCGTGGCTGTCTTTCCGCAGATGCTTTTGACCCC CCCCCGGGCTCCTCTTTCCTTATTCCTTCCCTCTTTGCGCCATGTCGACG ACGGCTCGCTCGCTTGCCTTAGGACAAGAGCGAATCGGGCATCAAGGAAC TGGAGGAGGAGTACCGGCTTTACCAGCGCGCCCGCCGGGAGCCGGCGGAC CCGGCCGGCGCCGAGGCCAAGCCTGATGCCGCCGTCATCCCCGCCGGTGA GCATTGTTTAAATGTAGAATGTAGGACATACTTCCACAACGCGTGGAGCG CCTACTTTGCCGTCCAGGGCTTCTGTAGCTTGTGTCCGGAGGTGCCTATG GTATTGTGCGTTTTCTTCGAGTTAAATATAGGTAGAGCGTAGATTTCCCC GAGCGGATGAAGTATTCTGGGCCATTTCCTCCTGCTTCAGAAGCCTTTCA AAGCAAGTTTACTCGACAGCAATATCGAGTAAACCGCTCGCTCTCGAAGA ACATCGAAATGATCGAACCGCCAGACGTGCCGGAATGATCCTGGCCCGCC GCAGGCAAGGTGGCGACGGCGCTGAAACGGGCGCCTGCGGTGGCGTACGA CGCGGCGGCGGCGGTGCTCCGCTTCACATGGGCGGTGCTGCTCGACCCGC GGCTGCTGGCGGCCAAGGCGGGCGAGGCGCGGGTGGCGCTCTCGTCCATG CTGCAGCATTACTGGATCGGCTCCAAGCTGCTGTGGAACGACATGAAGAC GGCGCAGAAGATCCTGAAGCGCGTGCTACGTGGCAGCGCGCTGACGCGGC GGGAGCGTAAGCAGCTGCTGCGGACGACAAGCGATATCTTCCGCATCGTG CCCATGGCCGTCTTCGTCATCGTGCCCTTCATGGAGCTGCTGCTGCCTGT TGCGCTCAAGCTCTTCCCCAACATGCTTCCCTCCACTTTCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1576:5437..6729+

>mRNA_P-wetherbeei_contig1576.4.1 ID=mRNA_P-wetherbeei_contig1576.4.1|Name=mRNA_P-wetherbeei_contig1576.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig1576:5437..6729+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCAGACGCCAAAGAGCAAACCGCCAACTTTTGGCCTGCTGAAGCC
ATCTGACGTTGAGATTGAGGCCATCAAGGACAAGAGCGAATCGGGCATCA
AGGAACTGGAGGAGGAGTACCGGCTTTACCAGCGCGCCCGCCGGGAGCCG
GCGGACCCGGCCGGCGCCGAGGCCAAGCCTGATGCCGCCGTCATCCCCGC
CGGCAAGGTGGCGACGGCGCTGAAACGGGCGCCTGCGGTGGCGTACGACG
CGGCGGCGGCGGTGCTCCGCTTCACATGGGCGGTGCTGCTCGACCCGCGG
CTGCTGGCGGCCAAGGCGGGCGAGGCGCGGGTGGCGCTCTCGTCCATGCT
GCAGCATTACTGGATCGGCTCCAAGCTGCTGTGGAACGACATGAAGACGG
CGCAGAAGATCCTGAAGCGCGTGCTACGTGGCAGCGCGCTGACGCGGCGG
GAGCGTAAGCAGCTGCTGCGGACGACAAGCGATATCTTCCGCATCGTGCC
CATGGCCGTCTTCGTCATCGTGCCCTTCATGGAGCTGCTGCTGCCTGTTG
CGCTCAAGCTCTTCCCCAACATGCTTCCCTCCACTTTCCAG
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