mRNA_P-wetherbeei_contig1576.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1576.2.1
Unique NamemRNA_P-wetherbeei_contig1576.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1576.2.1 vs. uniprot
Match: A0A7S4IHE6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHE6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.620e-10
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 TLGESWTKNTGW--LTTRDVCDWHGIECSEGDANVTGIWLGSNNLTGTLVAATFLWEMETIAAFDAHDNLLTGTVPDEVADLVALEYLDL 264
            T G +W +++GW   T +  C W+GI CS  +  V  I L SNNL G L     + E+ T+   D  DN L+G++PD++ +L+ LE L L
Sbjct:  219 TDGSAWFESSGWDGSTGKSPCYWYGISCSNDEDVVDDINLASNNLAGDLSDTLLISELHTLRYLDLFDNSLSGSIPDDIENLLNLELLSL 308
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BLAST of mRNA_P-wetherbeei_contig1576.2.1 vs. uniprot
Match: A0A7S3L766_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L766_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.990e-7
Identity = 31/94 (32.98%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    7 GESWTKNTGWLTTRDVCDWHGIEC------SEGDANVTGIWLGSNNLTGTLVAAT-FLWEMETIAAFDAHDNLLTGTVPDEVADLVALEYLDLS 267
            G  WT+NT WL+ +D+C WHGI+C      ++  + + G++L +NNL G++   T FL+ ++T++     +  + G++P   AD+ AL   +L+
Sbjct:  606 GFHWTRNTNWLSDKDICSWHGIQCYSTTSLNQFSSAIRGVFLETNNLKGSMPWETVFLFNLQTLSL--TGNPKIIGSMP---ADVCALRLFELT 694
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BLAST of mRNA_P-wetherbeei_contig1576.2.1 vs. uniprot
Match: A0A7S1VU68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VU68_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.610e-6
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 TLGESWTKNTGWLTTRDVCDWHGIECSEGD------ANVTGIWLGSNNLTGTLVAATFLWE 165
            T G +W K+ GW+ TRD+C+W G++C +GD        V  + L +NN+ GT   A F  E
Sbjct:   21 TNGANWKKSDGWVKTRDICEWWGVQCWDGDQYPDRAGQVQRLILDNNNMVGTTPKALFALE 81
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BLAST of mRNA_P-wetherbeei_contig1576.2.1 vs. uniprot
Match: UPI00177E4D2B (M64 family metallo-endopeptidase n=1 Tax=Phocaeicola sp. Sa1CVN1 TaxID=2762212 RepID=UPI00177E4D2B)

HSP 1 Score: 55.5 bits (132), Expect = 2.540e-5
Identity = 26/81 (32.10%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:    7 GESWTKNTGWLTTRDVCDWHGIECSEGDANVTGIWLGSNNLTGTLVAATFLWEMETIAAFDAHDNLLTGTVPDEVADLVAL 249
            G++W +N  W + + V +W+G+    GD  V G++LG+NNL+GTL     L ++E +       N + G +P+   D   L
Sbjct:  306 GDNWIRNDNWCSDKPVSEWYGVTLWPGDDRVRGLYLGANNLSGTLPPE--LTQLEELNYIFLPSNDIYGEIPENYIDFPLL 384
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1576.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4IHE6_9STRA4.620e-1038.89Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3L766_9STRA8.990e-732.98Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1VU68_9STRA9.610e-639.34Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
UPI00177E4D2B2.540e-532.10M64 family metallo-endopeptidase n=1 Tax=Phocaeico... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1576contigP-wetherbeei_contig1576:3758..4605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVL6
PFAMsCupin_4,DUF5011,EGF_CA,Ephrin_rec_like,HYR,SH2
Model size679
Max annot lvl2759|Eukaryota
KEGG koko:K17307
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.95e-32
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size678
COG categoryO
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186066.508912-CDS-P-wetherbeei_contig1576:3758..40081683186066.508912-CDS-P-wetherbeei_contig1576:3758..4008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1576 3759..4008 -
1683186066.5176094-CDS-P-wetherbeei_contig1576:4177..46051683186066.5176094-CDS-P-wetherbeei_contig1576:4177..4605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1576 4178..4605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1576.2.1prot_P-wetherbeei_contig1576.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1576 3759..4605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1576.2.1

>prot_P-wetherbeei_contig1576.2.1 ID=prot_P-wetherbeei_contig1576.2.1|Name=mRNA_P-wetherbeei_contig1576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
TLGESWTKNTGWLTTRDVCDWHGIECSEGDANVTGIWLGSNNLTGTLVAA
TFLWEMETIAAFDAHDNLLTGTVPDEVADLVALEYLDLSGNSLTGDVPSP
LGAMESLRTLNLADNNFDSIGNDWGVDGTALEQLFLQDNDISGFLPTAWL
QVNGSVFDRPITHLDASSSLFPALRTLRMSGNNIIQPAYQALQSTATWPQ
LSALDLRNNALNGTLDGIFDVLYCAD
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mRNA from alignment at P-wetherbeei_contig1576:3758..4605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1576.2.1 ID=mRNA_P-wetherbeei_contig1576.2.1|Name=mRNA_P-wetherbeei_contig1576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=848bp|location=Sequence derived from alignment at P-wetherbeei_contig1576:3758..4605- (Phaeothamnion wetherbeei SAG_119_79)
ACCCTTGGCGAATCTTGGACGAAGAACACCGGCTGGTTAACCACTCGCGA
CGTCTGCGACTGGCATGGCATAGAATGCAGTGAGGGGGACGCAAATGTGA
CTGGCATATGGCTCGGATCCAACAACTTGACAGGAACCCTCGTGGCTGCG
ACCTTCCTGTGGGAGATGGAAACGATTGCTGCATTCGACGCGCACGATAA
CTTGCTCACAGGAACCGTTCCGGACGAAGTCGCCGATCTGGTAGCGTTAG
AATACCTCGATTTGTCCGGCAACTCCCTGACCGGCGACGTTCCTTCGCCT
CTGGGCGCAATGGAGAGTCTCCGTACGCTCAACCTCGCCGATAACAACTT
CGACTCCATAGGCAACGACTGGGGAGTCGATGGTACGGCACTGGAACAGC
TTTTTCTCCAAGACAATGACATCTCTGGGTGAGCGGCTGCTCTAGCCTGA
TGAAGCCTTTCCCTCTCATGCATGATATGGCAGGCTTCGCAACTGTCTGA
AGTTTCTCTTATTTTTGTCGCGTTGAAGCAGAAGTTACCCATTTTACCTG
ATCGCCGATCAGCTGCTCCCGGTCGGACTCGTCACCCTCATTCTCAGGTT
TCTGCCGACAGCGTGGCTGCAAGTCAATGGCAGCGTCTTCGACCGTCCGA
TCACGCACCTCGACGCTTCTTCTTCATTGTTTCCGGCGCTCCGGACGCTT
CGAATGTCCGGCAACAACATCATCCAGCCGGCGTACCAAGCCCTGCAATC
CACAGCGACGTGGCCGCAGCTTTCGGCGCTGGATCTGCGGAACAACGCGC
TGAATGGGACGTTAGACGGCATTTTTGACGTTTTGTATTGTGCGGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1576:3758..4605-

>mRNA_P-wetherbeei_contig1576.2.1 ID=mRNA_P-wetherbeei_contig1576.2.1|Name=mRNA_P-wetherbeei_contig1576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig1576:3758..4605- (Phaeothamnion wetherbeei SAG_119_79)
ACCCTTGGCGAATCTTGGACGAAGAACACCGGCTGGTTAACCACTCGCGA
CGTCTGCGACTGGCATGGCATAGAATGCAGTGAGGGGGACGCAAATGTGA
CTGGCATATGGCTCGGATCCAACAACTTGACAGGAACCCTCGTGGCTGCG
ACCTTCCTGTGGGAGATGGAAACGATTGCTGCATTCGACGCGCACGATAA
CTTGCTCACAGGAACCGTTCCGGACGAAGTCGCCGATCTGGTAGCGTTAG
AATACCTCGATTTGTCCGGCAACTCCCTGACCGGCGACGTTCCTTCGCCT
CTGGGCGCAATGGAGAGTCTCCGTACGCTCAACCTCGCCGATAACAACTT
CGACTCCATAGGCAACGACTGGGGAGTCGATGGTACGGCACTGGAACAGC
TTTTTCTCCAAGACAATGACATCTCTGGGTTTCTGCCGACAGCGTGGCTG
CAAGTCAATGGCAGCGTCTTCGACCGTCCGATCACGCACCTCGACGCTTC
TTCTTCATTGTTTCCGGCGCTCCGGACGCTTCGAATGTCCGGCAACAACA
TCATCCAGCCGGCGTACCAAGCCCTGCAATCCACAGCGACGTGGCCGCAG
CTTTCGGCGCTGGATCTGCGGAACAACGCGCTGAATGGGACGTTAGACGG
CATTTTTGACGTTTTGTATTGTGCGGAC
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