mRNA_P-wetherbeei_contig15737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15737.1.1
Unique NamemRNA_P-wetherbeei_contig15737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15737.1.1 vs. uniprot
Match: A0A6M5YYY9_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YYY9_9BACT)

HSP 1 Score: 324 bits (830), Expect = 2.620e-105
Identity = 163/186 (87.63%), Postives = 172/186 (92.47%), Query Frame = 1 
Query:    1 YRGNLQTDQYQYVLIGQFLIDEPFRTDVTDIGPRPWVLQAYTLKSDRLGQSVVHGFVAVVAGRDALDLFFPVVLLGAALLCPATFLLCPQFGLPRRLWPAVAVTVGIAPGTEFLISSCFLSHMLCMPALVASLAGASRLARGGGPRPLFGTAAALALGFAVYTEFAPLFFGTAAAALATGVVRGHL 558
            YRGNLQ+DQYQYVL GQFLIDEPF+T+V DIGPRPWVLQAY LKSDRLGQSV+HGFVAVVAGRDALDLFFPV L+GAALLCPATFLLCPQFGLPRRLWPAVAV VGIAPG EFLISSCFLSH+LCMPALVA+LAGA+RLARGG  RPL GTAAALALGFAVYTEFAPLFFGT AAAL  G+V G L
Sbjct:  121 YRGNLQSDQYQYVLTGQFLIDEPFQTEVNDIGPRPWVLQAYALKSDRLGQSVIHGFVAVVAGRDALDLFFPVELMGAALLCPATFLLCPQFGLPRRLWPAVAVAVGIAPGIEFLISSCFLSHVLCMPALVANLAGAARLARGGSTRPLVGTAAALALGFAVYTEFAPLFFGTTAAALTAGIVCGSL 306
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BLAST of mRNA_P-wetherbeei_contig15737.1.1 vs. uniprot
Match: A0A6M5Z4C3_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5Z4C3_9BACT)

HSP 1 Score: 201 bits (512), Expect = 2.750e-58
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = 1 
Query:    1 YRGNLQTDQYQYVLIGQFLIDEPFRTDVTDIGPRPWVLQAYTLKSDRLGQSVVHGFVAVVAGRDALDLFFPVVLLGAALLCPATFLLCPQFGLPRRLWPAVAVTVGIAPGTEFLISSCFLSHMLCMPALVASLAGASRLARGGGPRPLFGTAAALALGFAVYTEFAPLFFGTAAAALATGVVRGHL 558
            YRGNL++DQY YV++ QFL++EPF  + +D+G RPW++    LK+DRLGQSV HGF+A+ AGRDALD FFP +LLG  L+ PA FLL  Q GL RR     A+   +APG E  +S C+LS  L   AL+A +AG  RLARGG  R L GT   L LGF+VYTEF PLF GTA AAL  GV+R H+
Sbjct:  120 YRGNLKSDQYHYVVLAQFLMEEPFSIECSDLGDRPWLIMPLILKADRLGQSVAHGFIAITAGRDALDTFFPALLLGPGLMVPAVFLLGGQCGLSRRWTVWAALAAALAPGVEIPVSYCYLSQALGDSALIAFMAGVIRLARGGDWRALPGTMGTLVLGFSVYTEFVPLFAGTAGAALVLGVLRRHV 305
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BLAST of mRNA_P-wetherbeei_contig15737.1.1 vs. uniprot
Match: A0A6M5Z696_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5Z696_9BACT)

HSP 1 Score: 200 bits (509), Expect = 7.790e-58
Identity = 109/186 (58.60%), Postives = 126/186 (67.74%), Query Frame = 1 
Query:    1 YRGNLQTDQYQYVLIGQFLIDEPFRTDVTDIGPRPWVLQAYTLKSDRLGQSVVHGFVAVVAGRDALDLFFPVVLLGAALLCPATFLLCPQFGLPRRLWPAVAVTVGIAPGTEFLISSCFLSHMLCMPALVASLAGASRLARGGGPRPLFGTAAALALGFAVYTEFAPLFFGTAAAALATGVVRGHL 558
            YRG+LQ+DQY YV++ QFL+DEPF TD  D+  R W++    LK DR+GQSVVHGF+AV AG +ALD FFP +LLG  L+ PA FLL  Q GL R      A+  G+APG E L+S CFLSH L   ALVA LA   RLAR GG   L G  A   LG +VYTEFAPLF G   AALA GVVRGHL
Sbjct:  120 YRGDLQSDQYPYVVLAQFLMDEPFSTDRPDLSDRAWLVLPLDLKPDRIGQSVVHGFIAVAAGHNALDTFFPTLLLGPGLMVPAVFLLGTQCGLSRFWTTWAALAAGLAPGVEVLVSLCFLSHSLGDTALVAFLASVIRLARAGGSFSLVGAMATFVLGCSVYTEFAPLFVGVGGAALAAGVVRGHL 305
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BLAST of mRNA_P-wetherbeei_contig15737.1.1 vs. uniprot
Match: UPI001AE74DA9 (hypothetical protein n=1 Tax=Methanomicrobium sp. W14 TaxID=2817839 RepID=UPI001AE74DA9)

HSP 1 Score: 67.8 bits (164), Expect = 6.450e-10
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:    1 YRGNLQTDQYQYVLIGQFLIDEPFRTDVTDIGPRPWVLQAYTLKSDRLGQSVVHGFVAVVAGRDALDLFFPVVLLGAALLCPATFLLCPQFGLPRRLWPAVAVTVGIAPGTEFLISSCFLSHMLCMPALV 390
            Y G    DQY YV   QFLID PF T +  +G  P++ +A   K DR+GQSV+ G+VAV++ ++A   +  + LL   L+    ++   +           A++    PG   +    F S  L +P L+
Sbjct:  122 YLGYGWIDQYNYVATSQFLIDSPFSTSLDQVGEIPYLAEAIIKKDDRIGQSVLEGYVAVLSFQNAKTAYGAISLLSPLLVFFVIWIYSRRLIKDEWAQYGAAISAACIPGFALIHLQDFFSQALAVPFLL 251
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6M5YYY9_9BACT2.620e-10587.63Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A6M5Z4C3_9BACT2.750e-5856.45Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A6M5Z696_9BACT7.790e-5858.60Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
UPI001AE74DA96.450e-1031.54hypothetical protein n=1 Tax=Methanomicrobium sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15737contigP-wetherbeei_contig15737:1016..1573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size558
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186065.7030885-CDS-P-wetherbeei_contig15737:1015..15731683186065.7030885-CDS-P-wetherbeei_contig15737:1015..1573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15737 1016..1573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15737.1.1prot_P-wetherbeei_contig15737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15737 1016..1573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15737.1.1

>prot_P-wetherbeei_contig15737.1.1 ID=prot_P-wetherbeei_contig15737.1.1|Name=mRNA_P-wetherbeei_contig15737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
YRGNLQTDQYQYVLIGQFLIDEPFRTDVTDIGPRPWVLQAYTLKSDRLGQ
SVVHGFVAVVAGRDALDLFFPVVLLGAALLCPATFLLCPQFGLPRRLWPA
VAVTVGIAPGTEFLISSCFLSHMLCMPALVASLAGASRLARGGGPRPLFG
TAAALALGFAVYTEFAPLFFGTAAAALATGVVRGHL
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mRNA from alignment at P-wetherbeei_contig15737:1016..1573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15737.1.1 ID=mRNA_P-wetherbeei_contig15737.1.1|Name=mRNA_P-wetherbeei_contig15737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig15737:1016..1573- (Phaeothamnion wetherbeei SAG_119_79)
TACCGCGGGAACCTGCAAACCGACCAGTACCAGTACGTCCTGATCGGTCA
GTTCCTGATCGATGAACCGTTCCGCACCGATGTGACCGACATCGGCCCGC
GCCCGTGGGTCCTCCAGGCGTACACGCTCAAATCCGACCGGCTCGGGCAA
TCGGTGGTTCACGGGTTCGTCGCCGTGGTCGCCGGCCGGGACGCACTCGA
TCTGTTCTTCCCCGTCGTACTATTGGGCGCGGCGCTCCTGTGCCCGGCTA
CGTTCCTGCTGTGCCCACAGTTCGGCTTGCCGCGGCGCCTCTGGCCGGCG
GTCGCGGTGACGGTCGGAATCGCACCCGGAACCGAGTTCCTCATCAGCTC
GTGCTTCCTGTCGCACATGCTGTGTATGCCGGCACTCGTCGCGAGCCTGG
CCGGTGCGTCCCGGCTGGCACGCGGCGGCGGCCCGCGCCCCCTCTTCGGG
ACGGCGGCGGCGCTGGCACTCGGGTTCGCGGTGTACACGGAGTTCGCCCC
GCTGTTCTTCGGAACCGCAGCGGCGGCACTCGCAACGGGAGTCGTGCGCG
GCCATTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15737:1016..1573-

>mRNA_P-wetherbeei_contig15737.1.1 ID=mRNA_P-wetherbeei_contig15737.1.1|Name=mRNA_P-wetherbeei_contig15737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig15737:1016..1573- (Phaeothamnion wetherbeei SAG_119_79)
TACCGCGGGAACCTGCAAACCGACCAGTACCAGTACGTCCTGATCGGTCA
GTTCCTGATCGATGAACCGTTCCGCACCGATGTGACCGACATCGGCCCGC
GCCCGTGGGTCCTCCAGGCGTACACGCTCAAATCCGACCGGCTCGGGCAA
TCGGTGGTTCACGGGTTCGTCGCCGTGGTCGCCGGCCGGGACGCACTCGA
TCTGTTCTTCCCCGTCGTACTATTGGGCGCGGCGCTCCTGTGCCCGGCTA
CGTTCCTGCTGTGCCCACAGTTCGGCTTGCCGCGGCGCCTCTGGCCGGCG
GTCGCGGTGACGGTCGGAATCGCACCCGGAACCGAGTTCCTCATCAGCTC
GTGCTTCCTGTCGCACATGCTGTGTATGCCGGCACTCGTCGCGAGCCTGG
CCGGTGCGTCCCGGCTGGCACGCGGCGGCGGCCCGCGCCCCCTCTTCGGG
ACGGCGGCGGCGCTGGCACTCGGGTTCGCGGTGTACACGGAGTTCGCCCC
GCTGTTCTTCGGAACCGCAGCGGCGGCACTCGCAACGGGAGTCGTGCGCG
GCCATTTA
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