mRNA_P-wetherbeei_contig157.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig157.7.1
Unique NamemRNA_P-wetherbeei_contig157.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig157.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig157contigP-wetherbeei_contig157:6670..7372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size536
Hectar predicted targeting categoryother localisation
Exons2
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.4394388-CDS-P-wetherbeei_contig157:6669..70021683186064.4394388-CDS-P-wetherbeei_contig157:6669..7002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig157 6670..7002 -
1683186064.45086-CDS-P-wetherbeei_contig157:7171..73721683186064.45086-CDS-P-wetherbeei_contig157:7171..7372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig157 7172..7372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig157.7.1prot_P-wetherbeei_contig157.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig157 6670..7372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig157.7.1

>prot_P-wetherbeei_contig157.7.1 ID=prot_P-wetherbeei_contig157.7.1|Name=mRNA_P-wetherbeei_contig157.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
WRDSKNRALGTLATMATSIVAEMEMTLNKLQNSELNKEAAKEMKAFADLV
AKLPAPHDELARKMIIQCTKKDSAPLKSRMMVLFVTHEIIIAVSKLHTPT
FRPQWASVIRAVAPWCLLGMGSAASHQGAALDRSSLSNVLKVLKAWLWAD
KEAAAGWIKEAEALRDAASVPGGARLPP
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mRNA from alignment at P-wetherbeei_contig157:6670..7372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig157.7.1 ID=mRNA_P-wetherbeei_contig157.7.1|Name=mRNA_P-wetherbeei_contig157.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=703bp|location=Sequence derived from alignment at P-wetherbeei_contig157:6670..7372- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGAGACTCAAAAAACCGTGCCTTGGGGACTTTGGCAACCATGGCGAC
ATCCATAGTGGCCGAGATGGAAATGACACTGAACAAGCTACAGAATTCAG
AACTCAACAAAGAAGCCGCGAAGGAGATGAAAGCCTTCGCAGATCTTGTG
GCGAAGTTGCCGGCGCCGCACGACGAGCTGGCAAGGAAAATGATCATACA
GGCAAGCAGCTGCATGGTAACCTTTGTCAATTTCGCCGGGCAAAACACGC
GTTTTTCTCTTTCGATGAGCGGTTTCAAAGCCCGGCACCTGCAGCATGCT
GATATAATTCGTGCAGGTTTAATTAATTGGCCCATGCTGCCCAAAATATC
TTTCCAACGTCTCTCTTCAGTGCACAAAGAAAGACTCTGCGCCGCTGAAG
AGCCGCATGATGGTCCTTTTCGTCACGCACGAGATTATCATCGCCGTCTC
CAAGCTTCACACCCCCACCTTCCGTCCGCAGTGGGCATCGGTCATACGCG
CGGTGGCGCCGTGGTGCCTGCTCGGCATGGGCAGCGCCGCCTCTCACCAG
GGTGCCGCGTTGGACCGCAGCAGCCTCTCCAACGTGCTCAAGGTGCTGAA
GGCATGGCTGTGGGCCGACAAGGAGGCCGCGGCAGGCTGGATAAAAGAGG
CGGAGGCCCTACGTGACGCCGCGAGCGTGCCCGGCGGCGCCCGGCTCCCT
CCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig157:6670..7372-

>mRNA_P-wetherbeei_contig157.7.1 ID=mRNA_P-wetherbeei_contig157.7.1|Name=mRNA_P-wetherbeei_contig157.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig157:6670..7372- (Phaeothamnion wetherbeei SAG_119_79)
TGGCGAGACTCAAAAAACCGTGCCTTGGGGACTTTGGCAACCATGGCGAC
ATCCATAGTGGCCGAGATGGAAATGACACTGAACAAGCTACAGAATTCAG
AACTCAACAAAGAAGCCGCGAAGGAGATGAAAGCCTTCGCAGATCTTGTG
GCGAAGTTGCCGGCGCCGCACGACGAGCTGGCAAGGAAAATGATCATACA
GTGCACAAAGAAAGACTCTGCGCCGCTGAAGAGCCGCATGATGGTCCTTT
TCGTCACGCACGAGATTATCATCGCCGTCTCCAAGCTTCACACCCCCACC
TTCCGTCCGCAGTGGGCATCGGTCATACGCGCGGTGGCGCCGTGGTGCCT
GCTCGGCATGGGCAGCGCCGCCTCTCACCAGGGTGCCGCGTTGGACCGCA
GCAGCCTCTCCAACGTGCTCAAGGTGCTGAAGGCATGGCTGTGGGCCGAC
AAGGAGGCCGCGGCAGGCTGGATAAAAGAGGCGGAGGCCCTACGTGACGC
CGCGAGCGTGCCCGGCGGCGCCCGGCTCCCTCCA
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