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Homology
BLAST of mRNA_P-wetherbeei_contig157.6.1 vs. uniprot
Match: D7FYQ1_ECTSI (CID domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ1_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.150e-20 Identity = 72/194 (37.11%), Postives = 105/194 (54.12%), Query Frame = 2
Query: 773 GDAPSDPAARRRFRAVKFEACHMIRALVLGASLTPAASFTAFHLLHHYQWMCGVPRE---EERLLPALCAACVFLAGKAEDPSCNKWGKLALVVAALRDG---LPPHRG----GDRVRKSAVLEFEGRLLLSRGYDLGIRHPSECVAVILRRLRAPPEMHGPVLEVLESPVYTHDSLCLEEEPEAAVAAAVLYA 1324
G++P + +R+ ++ + C +IR + TAFHL HHYQW CG+ LPA+C AC+ A KAED CN KL +++ +R LPP G G R V+ +E +LLLSRG+DL + HP+E ++ L AP ++ +VL S VYT +LCLEE+P + + AAV +A
Sbjct: 366 GESPQE--LQRKALSLTLDGCGLIRRIGKAMRFPGRVMLTAFHLFHHYQW-CGLVSSFKFSPPKLPAVCLACLLAATKAED--CN--AKLEVMLHQMRQLEPILPPLEGIFPLGQRPTSKEVVNYEYKLLLSRGFDLEVVHPTEQISAFLVLTGAPLQVGDLAYQVLCSRVYTDSTLCLEEDPLSCLCAAVQFA 552
BLAST of mRNA_P-wetherbeei_contig157.6.1 vs. uniprot
Match: A0A6H5JRI0_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI0_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.550e-20 Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 2
Query: 773 GDAPSDPAARRRFRAVKFEACHMIRALVLGASLTPAASFTAFHLLHHYQWMCGVP--REEERLLPALCAACVFLAGKAEDPSCNKWGKLALVVAALRDG---LPPHRG----GDRVRKSAVLEFEGRLLLSRGYDLGIRHPSECVAVILRRLRAPPEMHGPVLEVLESPVYTHDSLCLEEEPEAAVAAAVLYA 1324
G++P + +R+ ++ + C +IR + TAFHL HHYQW V + LPA+C AC+ A KAED CN KL +++ ++ LPP G G R V+++E +LLLSRG+DL + HP+E ++ L AP ++ +VL S VYT +LCLEE+P + + AAV +A
Sbjct: 370 GESPQE--LQRKALSLTLDGCGLIRRIGKAMRFPVRVMLTAFHLFHHYQWCGSVSSFKFSPPKLPAVCLACLLAATKAED--CN--AKLEVMLQQMKQLEPILPPLEGIFPLGQRPTSKEVVDYEYKLLLSRGFDLEVVHPTEQISAFLVLTGAPLQVGDLAYQVLCSRVYTDSTLCLEEDPLSCLCAAVQFA 556
BLAST of mRNA_P-wetherbeei_contig157.6.1 vs. uniprot
Match: A0A836CAK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.390e-15 Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 2
Query: 818 VKFEACHMIRALVLGASLTPAASFTAFHLLHHYQWMCGVPREEERL-----LPALCAACVFLAGKAEDPSCNKWGKLALVVAALRDGLPPH-----RGGDRVR----------KSAVLEFEGRLLLSRGYDLGIRHPSECVAVILRRLRAPPEMHGPVLEVLESPVYTHDSLCLEEEPEAAVAAAVLY 1321
+K +AC MIR + A +AFH HH+ W V + ++ LPA+C AC+ LAGKAED + + L + ++ LPP+ RGG ++ V+ +E R+L +R ++ ++HPS + L R R P + V V ++ YT LCL+E+ A +AAA++Y
Sbjct: 2 LKMDACAMIRHIGRAMRYGERAMLSAFHFFHHFHW---VSLDAGQMWPATDLPAVCLACLHLAGKAEDTA-FRIDYLMDIADQMKMALPPYGAGTGRGGGSSADILAAGRAPSRADVVRYEYRILETRRFNTNVQHPSRRLPEALARARVPAALRDVVPGVFQTRAYTDCDLCLQEDYRAVIAAAIVY 185
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3078 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | Cyclin-like |
| Ec32 ortholog | Ec-26_004300.1 |
| Cds size | 2775 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186064.522427-UTR-P-wetherbeei_contig157:3376..3648 | 1683186064.522427-UTR-P-wetherbeei_contig157:3376..3648 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig157 3377..3648 - |
| 1683186064.5524533-UTR-P-wetherbeei_contig157:6519..6550 | 1683186064.5524533-UTR-P-wetherbeei_contig157:6519..6550 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig157 6520..6550 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186064.533627-CDS-P-wetherbeei_contig157:3648..4128 | 1683186064.533627-CDS-P-wetherbeei_contig157:3648..4128 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig157 3649..4128 - |
| 1683186064.5430393-CDS-P-wetherbeei_contig157:4224..6519 | 1683186064.5430393-CDS-P-wetherbeei_contig157:4224..6519 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig157 4225..6519 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig157.6.1 >prot_P-wetherbeei_contig157.6.1 ID=prot_P-wetherbeei_contig157.6.1|Name=mRNA_P-wetherbeei_contig157.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=925bp
MAVNDIAATAPPRSQPPLPQPAFGMLPAAVAPTKVDGKRPQSSGGWGASV KGSGRAWLDTAKRQRVVSEGSPGGTSSPALRPPPDDTDMTDLFVEEYNRS GLEGEGESAYSAIEAEPLLETPALATAAARTAATAAAEREPTAESALASG DGDGDRSGLGGGDDGGGITGGTAATAAAEATAVTNVKQEDGGATATGDGI DDGQALPVVTPSPDGAAAAPDMSPEGAGAAADADDDDAAVESDEDGDGDA PSDPAARRRFRAVKFEACHMIRALVLGASLTPAASFTAFHLLHHYQWMCG VPREEERLLPALCAACVFLAGKAEDPSCNKWGKLALVVAALRDGLPPHRG GDRVRKSAVLEFEGRLLLSRGYDLGIRHPSECVAVILRRLRAPPEMHGPV LEVLESPVYTHDSLCLEEEPEAAVAAAVLYASCLHAVAVPVDWDRTLKLE RRRVFYFFERMLRTRLRLRAAAARYDPSYLTGAATHERLAAAWAERHRRD REYKKEGKRQDRDEPRRRASEPPPLHNRDRHERRCERRCGRHDRHDRHSD GDGDSDAGGSDDDGARFSDDGGRGGSGGNGRRRDGGRDVRPGTRSDHGLS SAGTAAAFARTSPGEAPGDDTRGPSEWGAASPPPPPLATPPPLPMAPSLP GSSLQQPPLPPSGVHAGQDGPFGRPRPDQPGQYPGPALPPWQGQGQGSPQ QQGYQPTPSSLLLPQQQQHRQLPLPSHHHQPQGPGSHHQPPPQQHLGISL PPRQLPRPPGFVDFGQQQQQQQQPPPQHGHGVGPRYGGGPQHGGMTMGFP PGQRQQQQLPPQQHGQHGTFGGSRLMHPLQPQQQGRPFTGGPLPHEMHRM GPGALPPPHQQQQQQQRHGVGSQYGGGPQYGGGPMGFLSGQGPLPQQGPP PGPGAGRMPGPMGWDSSLRPGQLR* back to topmRNA from alignment at P-wetherbeei_contig157:3377..6550- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig157.6.1 ID=mRNA_P-wetherbeei_contig157.6.1|Name=mRNA_P-wetherbeei_contig157.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3174bp|location=Sequence derived from alignment at P-wetherbeei_contig157:3377..6550- (Phaeothamnion wetherbeei SAG_119_79) ACAGTCCCTTCCACCGCCGCTGGTTGCGGCAATGGCGGTCAATGACATCG
CTGCCACCGCGCCGCCGCGGTCGCAGCCGCCGCTGCCGCAACCTGCTTTC
GGAATGCTGCCTGCTGCCGTCGCGCCCACCAAGGTCGACGGCAAACGCCC
ACAGTCGTCGGGCGGTTGGGGCGCCTCCGTGAAAGGCAGCGGGCGGGCGT
GGCTAGACACTGCGAAGCGGCAGCGCGTCGTCAGCGAGGGGTCGCCGGGG
GGAACCTCTTCGCCAGCGTTGCGACCGCCGCCGGACGACACGGACATGAC
GGACTTGTTCGTGGAAGAGTACAATAGAAGTGGACTCGAGGGAGAAGGCG
AGAGCGCTTATTCTGCAATCGAGGCGGAGCCCCTGCTGGAGACGCCGGCT
CTGGCGACGGCGGCTGCAAGAACCGCGGCGACTGCGGCGGCAGAACGAGA
ACCGACGGCAGAATCTGCATTGGCCAGCGGCGATGGGGATGGTGACCGAA
GCGGCCTCGGAGGCGGCGACGACGGCGGCGGCATTACTGGTGGCACTGCT
GCAACGGCAGCAGCGGAAGCAACAGCAGTAACAAACGTAAAGCAGGAAGA
TGGCGGAGCCACTGCGACCGGCGACGGAATAGACGACGGCCAGGCGCTGC
CGGTGGTGACACCGTCGCCCGACGGCGCCGCGGCGGCGCCCGACATGTCG
CCGGAAGGCGCCGGCGCAGCGGCCGACGCCGACGACGACGATGCCGCCGT
CGAGAGCGACGAGGACGGCGATGGTGACGCGCCGAGTGACCCTGCGGCGC
GGCGGCGGTTCCGCGCGGTCAAATTCGAGGCCTGCCACATGATCCGGGCG
CTGGTGCTGGGCGCGAGCCTCACCCCGGCGGCGAGCTTCACCGCCTTCCA
CTTGCTGCATCACTACCAGTGGATGTGCGGTGTCCCGCGCGAGGAGGAGC
GGCTGCTGCCAGCGCTGTGCGCGGCCTGCGTTTTCCTTGCCGGCAAGGCG
GAGGACCCCAGCTGCAACAAGTGGGGCAAGCTGGCACTCGTCGTCGCCGC
CCTCAGGGACGGCCTGCCGCCGCACCGCGGCGGCGACCGCGTCCGGAAGA
GCGCCGTGCTCGAATTCGAGGGGCGGCTGCTGCTATCGCGCGGCTACGAC
TTGGGGATCCGTCACCCATCCGAGTGCGTTGCAGTCATCCTGCGCCGCCT
GCGGGCGCCGCCGGAGATGCACGGGCCCGTCTTGGAGGTGTTGGAGTCAC
CGGTCTACACGCACGACTCGCTCTGCCTGGAGGAGGAGCCGGAGGCGGCG
GTGGCGGCGGCCGTCCTGTACGCATCCTGCCTGCATGCGGTCGCCGTCCC
AGTGGACTGGGATCGGACGCTCAAGCTGGAGCGCCGCCGGGTGTTCTACT
TCTTCGAGCGGATGCTGCGAACGCGCCTGCGGCTGCGGGCGGCGGCCGCC
CGATACGACCCCTCGTACCTCACAGGCGCAGCAACGCATGAGCGGCTGGC
AGCGGCGTGGGCGGAGCGCCATCGCCGTGACCGCGAGTATAAAAAGGAGG
GCAAGCGGCAGGACCGCGACGAGCCGCGCCGGCGGGCGTCCGAGCCGCCG
CCGCTGCACAACCGCGATCGCCACGAGAGGCGGTGCGAGCGGCGGTGCGG
CCGGCACGACCGGCACGACCGGCACAGCGACGGGGACGGCGACAGCGATG
CTGGCGGGAGCGATGACGATGGCGCTCGTTTTAGTGACGACGGTGGCCGC
GGCGGCAGCGGCGGCAACGGCAGAAGGAGAGACGGCGGCAGGGATGTCAG
GCCGGGGACGCGGTCGGACCATGGGCTATCGTCTGCCGGCACCGCTGCTG
CCTTCGCCCGGACTTCGCCGGGAGAGGCGCCGGGAGACGACACGCGGGGC
CCATCGGAATGGGGAGCGGCGTCGCCACCCCCCCCACCCTTGGCAACGCC
GCCGCCGTTGCCGATGGCGCCGTCGCTTCCGGGCTCGTCGCTGCAGCAGC
CACCGCTGCCGCCTTCCGGTGTGCATGCGGGGCAAGATGGGCCGTTCGGC
CGACCGCGCCCTGATCAGCCTGGACAGTATCCGGGACCTGCGCTGCCGCC
ATGGCAGGGGCAGGGGCAGGGGTCGCCGCAGCAGCAGGGCTATCAGCCAA
CGCCGTCATCGCTGCTGCTGCCGCAACAGCAGCAGCACCGCCAGCTGCCA
CTCCCGTCGCATCACCATCAGCCGCAGGGGCCGGGATCGCATCACCAGCC
GCCGCCGCAGCAGCATCTGGGGATATCGCTGCCGCCAAGGCAACTGCCGC
GGCCTCCGGGGTTTGTCGACTTCGGTGCTCGTGGTCAGTACTACCTGCCG
CAGCCGCTGGCCGGACTGGCCCCATCGCAGCATGGGCGGCGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGC
CCCCCCAGCACGGGCATGGCGTTGGACCGCGGTACGGCGGCGGGCCGCAG
CACGGCGGCATGACAATGGGCTTCCCGCCGGGGCAGAGGCAGCAGCAGCA
GCTACCGCCGCAGCAGCACGGGCAGCACGGGACATTCGGCGGCAGCAGGC
TGATGCATCCGCTGCAGCCGCAGCAGCAGGGGCGACCGTTCACCGGCGGG
CCCCTGCCACATGAGATGCACCGGATGGGCCCCGGAGCACTTCCGCCGCC
GCACCAGCAACAGCAGCAGCAGCAGAGGCACGGCGTTGGATCCCAGTACG
GCGGCGGGCCACAGTACGGCGGCGGGCCCATGGGCTTCCTGTCGGGGCAG
GGGCCGCTGCCGCAGCAGGGGCCGCCGCCGGGGCCGGGGGCCGGGCGGAT
GCCGGGGCCAATGGGATGGGACAGCAGCCTTCGACCAGGCCAGCTACGGT
GACCGCGGCAGGCGGCTGGCGCCGCGGCGATGGCAGCCACTGAAACGGCT
GGGACGCTAGAAAAGGAACAATGGCACTTTCTGTGGATGATGATTCCCAA
TATGGTTTCCGAGTGTCTAAACGAAACAGCGGTGACGAAAAAGTACGAAA
ACGAGGAAAAGAATATTGTGAGCGCCCGCCTCGCAGTAATGCGGCTAGTT
GCGAAGGAGCGTCGATACCACAGGCAGCCAGGGAGCGGGATGGGGCGAGA
GCGATCGACCAAAGGTAGATGGGT back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig157:3377..6550- >mRNA_P-wetherbeei_contig157.6.1 ID=mRNA_P-wetherbeei_contig157.6.1|Name=mRNA_P-wetherbeei_contig157.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2775bp|location=Sequence derived from alignment at P-wetherbeei_contig157:3377..6550- (Phaeothamnion wetherbeei SAG_119_79) ATGGCGGTCAATGACATCGCTGCCACCGCGCCGCCGCGGTCGCAGCCGCC GCTGCCGCAACCTGCTTTCGGAATGCTGCCTGCTGCCGTCGCGCCCACCA AGGTCGACGGCAAACGCCCACAGTCGTCGGGCGGTTGGGGCGCCTCCGTG AAAGGCAGCGGGCGGGCGTGGCTAGACACTGCGAAGCGGCAGCGCGTCGT CAGCGAGGGGTCGCCGGGGGGAACCTCTTCGCCAGCGTTGCGACCGCCGC CGGACGACACGGACATGACGGACTTGTTCGTGGAAGAGTACAATAGAAGT GGACTCGAGGGAGAAGGCGAGAGCGCTTATTCTGCAATCGAGGCGGAGCC CCTGCTGGAGACGCCGGCTCTGGCGACGGCGGCTGCAAGAACCGCGGCGA CTGCGGCGGCAGAACGAGAACCGACGGCAGAATCTGCATTGGCCAGCGGC GATGGGGATGGTGACCGAAGCGGCCTCGGAGGCGGCGACGACGGCGGCGG CATTACTGGTGGCACTGCTGCAACGGCAGCAGCGGAAGCAACAGCAGTAA CAAACGTAAAGCAGGAAGATGGCGGAGCCACTGCGACCGGCGACGGAATA GACGACGGCCAGGCGCTGCCGGTGGTGACACCGTCGCCCGACGGCGCCGC GGCGGCGCCCGACATGTCGCCGGAAGGCGCCGGCGCAGCGGCCGACGCCG ACGACGACGATGCCGCCGTCGAGAGCGACGAGGACGGCGATGGTGACGCG CCGAGTGACCCTGCGGCGCGGCGGCGGTTCCGCGCGGTCAAATTCGAGGC CTGCCACATGATCCGGGCGCTGGTGCTGGGCGCGAGCCTCACCCCGGCGG CGAGCTTCACCGCCTTCCACTTGCTGCATCACTACCAGTGGATGTGCGGT GTCCCGCGCGAGGAGGAGCGGCTGCTGCCAGCGCTGTGCGCGGCCTGCGT TTTCCTTGCCGGCAAGGCGGAGGACCCCAGCTGCAACAAGTGGGGCAAGC TGGCACTCGTCGTCGCCGCCCTCAGGGACGGCCTGCCGCCGCACCGCGGC GGCGACCGCGTCCGGAAGAGCGCCGTGCTCGAATTCGAGGGGCGGCTGCT GCTATCGCGCGGCTACGACTTGGGGATCCGTCACCCATCCGAGTGCGTTG CAGTCATCCTGCGCCGCCTGCGGGCGCCGCCGGAGATGCACGGGCCCGTC TTGGAGGTGTTGGAGTCACCGGTCTACACGCACGACTCGCTCTGCCTGGA GGAGGAGCCGGAGGCGGCGGTGGCGGCGGCCGTCCTGTACGCATCCTGCC TGCATGCGGTCGCCGTCCCAGTGGACTGGGATCGGACGCTCAAGCTGGAG CGCCGCCGGGTGTTCTACTTCTTCGAGCGGATGCTGCGAACGCGCCTGCG GCTGCGGGCGGCGGCCGCCCGATACGACCCCTCGTACCTCACAGGCGCAG CAACGCATGAGCGGCTGGCAGCGGCGTGGGCGGAGCGCCATCGCCGTGAC CGCGAGTATAAAAAGGAGGGCAAGCGGCAGGACCGCGACGAGCCGCGCCG GCGGGCGTCCGAGCCGCCGCCGCTGCACAACCGCGATCGCCACGAGAGGC GGTGCGAGCGGCGGTGCGGCCGGCACGACCGGCACGACCGGCACAGCGAC GGGGACGGCGACAGCGATGCTGGCGGGAGCGATGACGATGGCGCTCGTTT TAGTGACGACGGTGGCCGCGGCGGCAGCGGCGGCAACGGCAGAAGGAGAG ACGGCGGCAGGGATGTCAGGCCGGGGACGCGGTCGGACCATGGGCTATCG TCTGCCGGCACCGCTGCTGCCTTCGCCCGGACTTCGCCGGGAGAGGCGCC GGGAGACGACACGCGGGGCCCATCGGAATGGGGAGCGGCGTCGCCACCCC CCCCACCCTTGGCAACGCCGCCGCCGTTGCCGATGGCGCCGTCGCTTCCG GGCTCGTCGCTGCAGCAGCCACCGCTGCCGCCTTCCGGTGTGCATGCGGG GCAAGATGGGCCGTTCGGCCGACCGCGCCCTGATCAGCCTGGACAGTATC CGGGACCTGCGCTGCCGCCATGGCAGGGGCAGGGGCAGGGGTCGCCGCAG CAGCAGGGCTATCAGCCAACGCCGTCATCGCTGCTGCTGCCGCAACAGCA GCAGCACCGCCAGCTGCCACTCCCGTCGCATCACCATCAGCCGCAGGGGC CGGGATCGCATCACCAGCCGCCGCCGCAGCAGCATCTGGGGATATCGCTG CCGCCAAGGCAACTGCCGCGGCCTCCGGGGTTTGTCGACTTCGGTCAGCA GCAGCAGCAGCAGCAGCAGCCGCCCCCCCAGCACGGGCATGGCGTTGGAC CGCGGTACGGCGGCGGGCCGCAGCACGGCGGCATGACAATGGGCTTCCCG CCGGGGCAGAGGCAGCAGCAGCAGCTACCGCCGCAGCAGCACGGGCAGCA CGGGACATTCGGCGGCAGCAGGCTGATGCATCCGCTGCAGCCGCAGCAGC AGGGGCGACCGTTCACCGGCGGGCCCCTGCCACATGAGATGCACCGGATG GGCCCCGGAGCACTTCCGCCGCCGCACCAGCAACAGCAGCAGCAGCAGAG GCACGGCGTTGGATCCCAGTACGGCGGCGGGCCACAGTACGGCGGCGGGC CCATGGGCTTCCTGTCGGGGCAGGGGCCGCTGCCGCAGCAGGGGCCGCCG CCGGGGCCGGGGGCCGGGCGGATGCCGGGGCCAATGGGATGGGACAGCAG CCTTCGACCAGGCCAGCTACGGTGA back to top
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