mRNA_P-wetherbeei_contig15692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI) HSP 1 Score: 169 bits (427), Expect = 2.250e-46 Identity = 94/154 (61.04%), Postives = 112/154 (72.73%), Query Frame = 1
Query: 1 GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
GGNYG E+ D+ +RF S G + +F LN+KDVSQCV+PG +K NDVELQ HESDA D Q ED LV +R+ LP + D E S AE Q VMERANI DVKG VLVEF+ QGTF PRGRY++EMY FMRMHGS+YDYKIQY+DI++
Sbjct: 99 GGNYGDIEVLDN-IVRF---SSGNKTLFDLNIKDVSQCVMPGV-KKSNDVELQLHESDATD-QTEDTLVAIRVTLPEKDEDTD-ERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISK 245
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A6H5L083_9PHAE (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L083_9PHAE) HSP 1 Score: 157 bits (398), Expect = 3.350e-43 Identity = 84/130 (64.62%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 73 RDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
R +F LN+KDVSQCV+PG +K NDVELQ HESDA D Q ED LV +R+ LP + D E S AE Q VMERANI DVKG VLVEF+ QGTF PRGRY++EMY FMRMHGS+YDYKIQY+DI++
Sbjct: 3 RTLFDLNIKDVSQCVMPGV-KKSNDVELQLHESDATD-QTEDTLVAIRVTLPEKDEDTD-ERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISK 129
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A812V1D9_SYMMI (FACT complex subunit SSRP1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V1D9_SYMMI) HSP 1 Score: 152 bits (385), Expect = 6.780e-41 Identity = 82/162 (50.62%), Postives = 111/162 (68.52%), Query Frame = 1
Query: 1 GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAG--------GDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
GGN+G E+ D+ + +G + VF L L +VSQCVLPGNN+ ++VE+QFHE+D D + ED LV++RL P E ++E + A+ FQ+++MER IR V G V+ EF +DQGTF+TPRGRY I+MY FMRMHG+KYDYKI+YDDI+R
Sbjct: 118 GGNFGDIELDDNSMVMKSAKTG--KQVFDLKLTNVSQCVLPGNNK--DEVEIQFHEADTGDRE-EDMLVQIRLRFPTVEQADVEDRDEDAEEEETNAQIFQKKIMERGMIRSVTGNVIAEFSQDQGTFVTPRGRYAIQMYSTFMRMHGAKYDYKIKYDDIDR 274
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A7S0C3Q8_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3Q8_9STRA) HSP 1 Score: 142 bits (357), Expect = 7.090e-40 Identity = 68/129 (52.71%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 79 VFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAG-EAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
+ +++L DVSQCVLPGN R N++ELQFHESDA++ + D LV++R +P + ++ ++AE F E++M +ANI++ G V+ EFD +GTFLTPRGRYTIE+Y F+R+ G+KYDYKI+YDDI R
Sbjct: 8 IISIDLTDVSQCVLPGNTR--NEIELQFHESDAVERNS-DQLVQIRFYVPPDPDTDPNENETSAEMFHERIMTKANIKNTSGNVICEFDESKGTFLTPRGRYTIELYDSFLRLRGNKYDYKIKYDDITR 133
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A3F2RE26_9STRA (FACT complex subunit SSRP1 n=28 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RE26_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.400e-36 Identity = 77/149 (51.68%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 28 GDHGTLRFRGGSGGERDVFA----LNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
G+ G ++F G + RDV A L L+ +SQC LPG N +VELQFHE D + E+ LVEMRL LP G+ G+DE AE F+++V+E+ANIR V G +V+ D GTFLTPRGRY +E+YG F+RMHG +DYKI Y +INR
Sbjct: 82 GNWGEMKFEGPNLNFRDVNASVMELPLEQISQCALPGKN----EVELQFHEDDTVAGD-EETLVEMRLYLPPGD--GEDEVVTAEDFRQEVLEKANIRSVMGKSIVDLDETIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINR 223
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A0P1AN61_PLAHL (FACT complex subunit SSRP1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AN61_PLAHL) HSP 1 Score: 139 bits (349), Expect = 2.550e-35 Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 1
Query: 1 GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
GGN+G + + L FR + V L L+ +SQC LPG + +VELQFHE D + E+ LVEMRL LP G+ G+DE +AE+F+++V+E+ANIR V G +V+ D GTFLTPRGRY +E+YG F+RMHG +DYKI Y +INR
Sbjct: 102 GGNWGDMKF-EGPNLNFRTANA---SVMELPLEQISQCALPGKH----EVELQFHEDDTVAGD-EETLVEMRLYLPPGD--GEDEVVSAEEFRQEVLEKANIRSVMGKSIVDLDETIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINR 244
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A6U3RIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RIK7_9STRA) HSP 1 Score: 139 bits (349), Expect = 3.750e-35 Identity = 69/132 (52.27%), Postives = 98/132 (74.24%), Query Frame = 1
Query: 76 DVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAG---EAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
++ +L L +VSQCVLPGNNR N++ELQFHESD ++ D LV +R+ +P + +D + AE Q+++M+ ANI++ G+V+VEFD +GTFLTPRGRYTIE+Y F+RM G+KYDYKI+YDDI++
Sbjct: 160 EMMSLQLAEVSQCVLPGNNR--NEIELQFHESDTVE-AGTDQLVGVRIYIPPDPDMDPQDNDVQTPAEILQQRIMKMANIKNTTGSVIVEFDESRGTFLTPRGRYTIELYDSFLRMRGNKYDYKIKYDDISK 288
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A7S3Y0B3_HETAK (FACT complex subunit SSRP1 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0B3_HETAK) HSP 1 Score: 138 bits (348), Expect = 4.240e-35 Identity = 73/152 (48.03%), Postives = 102/152 (67.11%), Query Frame = 1
Query: 1 GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDI 456
GGNY FE + + + E+ + ++ + +SQCVLPGNN+K N VEL F D AE+ L +RL +P GE ++E + AE+FQ +V+ERANI VKG VLVE +++G FLTPRG+YT+E+Y FMRM+G+KYDYKI+Y D+
Sbjct: 32 GGNYADFEFKGNRIVF----TVDEKHLLEIDAQAISQCVLPGNNKKDNTVELMFPIVDEGVGPAEERLTSLRLWVPPGE-DAEEEGTGAERFQAEVLERANIGKVKGDVLVELGKERGNFLTPRGKYTLELYQDFMRMYGAKYDYKIRYGDV 178
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A7S2SJ65_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJ65_9STRA) HSP 1 Score: 137 bits (345), Expect = 4.970e-35 Identity = 68/132 (51.52%), Postives = 95/132 (71.97%), Query Frame = 1
Query: 76 DVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAG---EAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
++ ++ L +VSQCVLPGNNR N++ELQFHESD ++ D LV +R +P + D P++AE F +++M+ A I++ G V+VEFD ++GTFLTPRGRY IE+Y F+RM G+KYDYKI+YDDI R
Sbjct: 150 EMMSMKLAEVSQCVLPGNNR--NEIELQFHESDTVE-AGTDQLVAIRFYIPPDPEMDPSDRDAPTSAEVFHQRIMKNAKIKNTAGDVIVEFDENKGTFLTPRGRYLIELYDSFLRMRGNKYDYKIKYDDIAR 278
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Match: A0A5D6XJ40_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ40_9STRA) HSP 1 Score: 137 bits (344), Expect = 5.180e-35 Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVELQFHESDAMDNQAEDALVEMRLCLPAGEAGGDDEPSAAEQFQEQVMERANIRDVKGAVLVEFDRDQGTFLTPRGRYTIEMYGGFMRMHGSKYDYKIQYDDINR 462
GGN+G + + L FR + V + L+ VSQC LPG N +VELQFHE D + E+ LVEMR+ LP G+ G D+ AE F+++V++RANIR V G +V+ D GTFLTPRGRY +E+YG F+RMHG +DYKI Y +INR
Sbjct: 102 GGNWGDMKF-EGPNLNFRAN---DASVLEIPLEHVSQCALPGKN----EVELQFHEDDTVAGD-EETLVEMRVYLPPGD--GTDDVMTAELFRDEVLQRANIRAVAGKSIVDLDESMGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINR 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15692.1.1 >prot_P-wetherbeei_contig15692.1.1 ID=prot_P-wetherbeei_contig15692.1.1|Name=mRNA_P-wetherbeei_contig15692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp GGNYGQFEIGDHGTLRFRGGSGGERDVFALNLKDVSQCVLPGNNRKGNDVback to top mRNA from alignment at P-wetherbeei_contig15692:145..1318+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15692.1.1 ID=mRNA_P-wetherbeei_contig15692.1.1|Name=mRNA_P-wetherbeei_contig15692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1174bp|location=Sequence derived from alignment at P-wetherbeei_contig15692:145..1318+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15692:145..1318+ >mRNA_P-wetherbeei_contig15692.1.1 ID=mRNA_P-wetherbeei_contig15692.1.1|Name=mRNA_P-wetherbeei_contig15692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig15692:145..1318+ (Phaeothamnion wetherbeei SAG_119_79)back to top |