mRNA_P-wetherbeei_contig15691.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15691.1.1
Unique NamemRNA_P-wetherbeei_contig15691.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15691contigP-wetherbeei_contig15691:64..1586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1287
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1284
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.1870947-UTR-P-wetherbeei_contig15691:63..661683186064.1870947-UTR-P-wetherbeei_contig15691:63..66Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15691 64..66 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.1974118-CDS-P-wetherbeei_contig15691:66..4291683186064.1974118-CDS-P-wetherbeei_contig15691:66..429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15691 67..429 +
1683186064.2069292-CDS-P-wetherbeei_contig15691:665..15861683186064.2069292-CDS-P-wetherbeei_contig15691:665..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15691 666..1586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15691.1.1prot_P-wetherbeei_contig15691.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15691 67..1586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15691.1.1

>prot_P-wetherbeei_contig15691.1.1 ID=prot_P-wetherbeei_contig15691.1.1|Name=mRNA_P-wetherbeei_contig15691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=428bp
MAGAPTGSALVVVPASSWSLPGMARTIFRLRWQRQNAQDGKFGYPPAALG
FRRGLQTHAGASGDSTKGGTPRQLDPRLLQLIYQEEATGALGIPDELRMR
MMCQTEELEGEKRQRALRAQDGLDRVIRAQACMALLVDPPGSAGRCNRVR
GGAIFGGSGGVGGGNGDGDGNDAAAEEADSGNALYAEFAAGLREVVAEMA
AEESSMGTADRAPAAGGSGGGTSSGRIGSGPAAADPLLAPSSGSACRGAV
AGATPRGGGGSGGSGATAEGTAAAHRPLLLPWARRRYGILLCRRASQLLR
RLAFLLPELRADLEALADRGPGAAAAVWGFHDDGAAAAIGGSTAFGISFA
AGDSGGGGGSCDGGNGSEEDGLGPLELALVAMAEEAEVPAAVRVRMLRAA
TTLRGEQQQDVFFECMERLDDVARALAL
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mRNA from alignment at P-wetherbeei_contig15691:64..1586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15691.1.1 ID=mRNA_P-wetherbeei_contig15691.1.1|Name=mRNA_P-wetherbeei_contig15691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1523bp|location=Sequence derived from alignment at P-wetherbeei_contig15691:64..1586+ (Phaeothamnion wetherbeei SAG_119_79)
AGGATGGCGGGGGCGCCGACTGGGTCTGCCTTGGTCGTCGTGCCGGCGTC
GTCATGGTCGCTGCCCGGTATGGCCCGCACCATCTTTCGGCTCCGGTGGC
AGAGGCAAAATGCCCAAGACGGAAAGTTCGGGTATCCCCCAGCTGCCCTC
GGCTTCAGGCGCGGCCTGCAGACGCATGCCGGTGCATCTGGCGATAGCAC
CAAGGGCGGTACACCCCGGCAGCTTGACCCGCGGCTCTTGCAACTGATTT
ATCAGGAAGAAGCTACCGGCGCTCTGGGCATTCCGGACGAGTTGAGGATG
CGCATGATGTGTCAAACGGAGGAGCTGGAAGGCGAGAAGCGACAACGAGC
GCTGCGTGCTCAGGACGTGAGCTGCGACGACGGATGCCTTTGACTTTCAT
CCGAAATTCTCATTCCTTCCTGTTATAGTCGGCAGGGTTCTTGTTCCCAC
GCTCTGCGCATGGTTCATTCGCAAATTGAGCTCAGGTCATTGTAACTTTC
GCTCTGAAGGCTTTACAAGCCTTAAAGTAATTTTCGTTATCTTTTGAGGC
AGGCAACTTACATCGTAATTAACAAATTGCTGCTACATTTCCGCTTCCAC
AGGGTCTAGATCGCGTAATCCGAGCCCAAGCCTGCATGGCACTGCTGGTA
GACCCGCCTGGATCCGCTGGTCGCTGCAATAGAGTCCGTGGCGGCGCAAT
TTTCGGCGGCAGTGGCGGCGTTGGTGGCGGCAATGGTGACGGCGACGGCA
ACGACGCTGCCGCAGAGGAGGCCGATAGCGGCAACGCGCTGTACGCCGAA
TTCGCGGCGGGGTTGCGGGAGGTCGTCGCGGAGATGGCGGCGGAGGAATC
GTCGATGGGCACGGCGGACCGGGCCCCGGCTGCCGGCGGAAGTGGCGGCG
GCACCAGCAGCGGGCGTATCGGCAGCGGCCCTGCGGCCGCTGATCCGCTC
TTGGCGCCCTCCAGCGGCTCGGCTTGCCGCGGCGCCGTTGCTGGCGCTAC
TCCCCGCGGCGGTGGCGGCAGCGGCGGCAGCGGGGCCACAGCAGAAGGGA
CGGCGGCAGCCCACCGGCCGCTGCTGCTGCCTTGGGCGCGCCGGCGCTAC
GGCATTCTGCTCTGCCGGCGCGCCTCGCAGCTGCTGCGGCGGCTAGCGTT
CCTGCTGCCGGAGCTGCGGGCAGATTTGGAGGCGCTGGCCGACCGCGGGC
CCGGTGCCGCCGCCGCAGTGTGGGGATTCCACGACGACGGCGCCGCCGCC
GCCATCGGCGGGTCCACCGCCTTTGGCATCTCTTTCGCCGCTGGCGACAG
CGGCGGCGGCGGCGGCAGCTGCGATGGTGGCAATGGGTCGGAGGAGGATG
GACTGGGCCCACTGGAGCTGGCGCTGGTGGCCATGGCGGAGGAGGCGGAG
GTGCCGGCCGCGGTGCGTGTGCGCATGCTGCGGGCGGCGACGACGCTGCG
CGGGGAGCAGCAGCAGGACGTGTTCTTTGAGTGCATGGAGCGGCTTGACG
ACGTGGCACGTGCGCTGGCTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15691:64..1586+

>mRNA_P-wetherbeei_contig15691.1.1 ID=mRNA_P-wetherbeei_contig15691.1.1|Name=mRNA_P-wetherbeei_contig15691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig15691:64..1586+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGGGGCGCCGACTGGGTCTGCCTTGGTCGTCGTGCCGGCGTCGTC
ATGGTCGCTGCCCGGTATGGCCCGCACCATCTTTCGGCTCCGGTGGCAGA
GGCAAAATGCCCAAGACGGAAAGTTCGGGTATCCCCCAGCTGCCCTCGGC
TTCAGGCGCGGCCTGCAGACGCATGCCGGTGCATCTGGCGATAGCACCAA
GGGCGGTACACCCCGGCAGCTTGACCCGCGGCTCTTGCAACTGATTTATC
AGGAAGAAGCTACCGGCGCTCTGGGCATTCCGGACGAGTTGAGGATGCGC
ATGATGTGTCAAACGGAGGAGCTGGAAGGCGAGAAGCGACAACGAGCGCT
GCGTGCTCAGGACGGTCTAGATCGCGTAATCCGAGCCCAAGCCTGCATGG
CACTGCTGGTAGACCCGCCTGGATCCGCTGGTCGCTGCAATAGAGTCCGT
GGCGGCGCAATTTTCGGCGGCAGTGGCGGCGTTGGTGGCGGCAATGGTGA
CGGCGACGGCAACGACGCTGCCGCAGAGGAGGCCGATAGCGGCAACGCGC
TGTACGCCGAATTCGCGGCGGGGTTGCGGGAGGTCGTCGCGGAGATGGCG
GCGGAGGAATCGTCGATGGGCACGGCGGACCGGGCCCCGGCTGCCGGCGG
AAGTGGCGGCGGCACCAGCAGCGGGCGTATCGGCAGCGGCCCTGCGGCCG
CTGATCCGCTCTTGGCGCCCTCCAGCGGCTCGGCTTGCCGCGGCGCCGTT
GCTGGCGCTACTCCCCGCGGCGGTGGCGGCAGCGGCGGCAGCGGGGCCAC
AGCAGAAGGGACGGCGGCAGCCCACCGGCCGCTGCTGCTGCCTTGGGCGC
GCCGGCGCTACGGCATTCTGCTCTGCCGGCGCGCCTCGCAGCTGCTGCGG
CGGCTAGCGTTCCTGCTGCCGGAGCTGCGGGCAGATTTGGAGGCGCTGGC
CGACCGCGGGCCCGGTGCCGCCGCCGCAGTGTGGGGATTCCACGACGACG
GCGCCGCCGCCGCCATCGGCGGGTCCACCGCCTTTGGCATCTCTTTCGCC
GCTGGCGACAGCGGCGGCGGCGGCGGCAGCTGCGATGGTGGCAATGGGTC
GGAGGAGGATGGACTGGGCCCACTGGAGCTGGCGCTGGTGGCCATGGCGG
AGGAGGCGGAGGTGCCGGCCGCGGTGCGTGTGCGCATGCTGCGGGCGGCG
ACGACGCTGCGCGGGGAGCAGCAGCAGGACGTGTTCTTTGAGTGCATGGA
GCGGCTTGACGACGTGGCACGTGCGCTGGCTCTG
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