mRNA_P-wetherbeei_contig15689.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15689.1.1
Unique NamemRNA_P-wetherbeei_contig15689.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15689contigP-wetherbeei_contig15689:486..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMP7
Model size890
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.34e-08
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.079273-UTR-P-wetherbeei_contig15689:485..5301683186064.079273-UTR-P-wetherbeei_contig15689:485..530Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15689 486..530 -
1683186064.103922-UTR-P-wetherbeei_contig15689:1290..15861683186064.103922-UTR-P-wetherbeei_contig15689:1290..1586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15689 1291..1586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.0882173-CDS-P-wetherbeei_contig15689:530..9271683186064.0882173-CDS-P-wetherbeei_contig15689:530..927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15689 531..927 -
1683186064.095907-CDS-P-wetherbeei_contig15689:1138..12901683186064.095907-CDS-P-wetherbeei_contig15689:1138..1290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15689 1139..1290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15689.1.1prot_P-wetherbeei_contig15689.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15689 531..1290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15689.1.1

>prot_P-wetherbeei_contig15689.1.1 ID=prot_P-wetherbeei_contig15689.1.1|Name=mRNA_P-wetherbeei_contig15689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MRAVCTDPSCSKPAYYNTPGETKPRFCGKHKSDSMINVHNKLCQRQPCGK
RPHYGPPGGVASFCVTHKELGMINVHGRLCQSSMCGKQPTFAFRGEKVCG
DVETSLVKLPSTGQLWPERAKDQSGALRGAPPQPFLPSATITRLTHVTRL
SSAAAAPPLPLTADTKNLTASLLRGAPTSTDD*
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mRNA from alignment at P-wetherbeei_contig15689:486..1586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15689.1.1 ID=mRNA_P-wetherbeei_contig15689.1.1|Name=mRNA_P-wetherbeei_contig15689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1101bp|location=Sequence derived from alignment at P-wetherbeei_contig15689:486..1586- (Phaeothamnion wetherbeei SAG_119_79)
CTCCAACTACGCGAGGCCTTACAAGAGACTTCATTTCCCGAGAGCACCGG
TTTTTATCCCAAGCGGCTGGTTTCCTTCTTCACCTCCCTTCGGTCCGACT
GTCGTTCCCCACGAGTACCTTTCAACGTCGGGCGGCGCCTCTCGTCCCGT
TGGCGACGGCCTGGTCTGTTCAGCGCGGCAGCGTTGCGCCGTTTTGTTCC
TCTTGACCGTTAACGGGCGAGAGCGGCGTCTTCTGTCCTTTTGTGGGCGG
CCTGTCCGTTCAGCACGTCGGGCATCGCTCCTTCTCGTTCCTCACAATGC
GGGCTGTATGCACCGATCCCAGCTGTTCGAAACCGGCATACTACAATACA
CCTGGAGAGACGAAGCCTCGATTCTGTGGCAAACATAAATCTGATTCCAT
GATCAACGTCCACAACAAGCTCTGCCAGCGCCAGCCCTGTGGAAAAAGGT
GAGCGGCAGGGTGATGTTCACTGTTCTTCGTCAGAGAAAAGTCTCGAAAT
TTTCCTGGTATGCTCGACGTATGAGCTGTTTTCTACAATAGAGGCAGTTG
CTCAGTAACTTGTCCAGTAAGTTGCCAGGCCACAAATCTTCCCGCCTGCT
GCCATTTTCTGCTGGGGTTTCGTCATTCGTTCCCTCATCTACTTGTTCTT
CCCTGTTAGGCCACACTACGGGCCGCCGGGAGGAGTCGCGTCCTTCTGCG
TCACTCACAAGGAGCTGGGCATGATCAACGTGCACGGGCGACTCTGCCAA
AGCTCGATGTGTGGCAAGCAACCGACGTTCGCTTTTCGCGGCGAGAAGGT
GTGTGGTGACGTCGAAACTTCTCTGGTGAAACTGCCATCAACCGGCCAAC
TATGGCCGGAGAGGGCGAAAGACCAGAGCGGGGCGCTACGCGGCGCTCCT
CCACAGCCTTTCCTCCCGTCAGCGACAATCACGCGGCTCACGCACGTTAC
GAGACTCTCATCCGCCGCCGCCGCGCCGCCGCTGCCCCTGACTGCCGACA
CCAAAAACCTTACAGCCTCGCTTCTGCGCGGAGCACCAACTTCCACAGAT
GATTGACGTCGTCTACCGCCGCTGCGAGTTTGATGAGGGCTGCGAGCGCC
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15689:486..1586-

>mRNA_P-wetherbeei_contig15689.1.1 ID=mRNA_P-wetherbeei_contig15689.1.1|Name=mRNA_P-wetherbeei_contig15689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig15689:486..1586- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCTGTATGCACCGATCCCAGCTGTTCGAAACCGGCATACTACAA
TACACCTGGAGAGACGAAGCCTCGATTCTGTGGCAAACATAAATCTGATT
CCATGATCAACGTCCACAACAAGCTCTGCCAGCGCCAGCCCTGTGGAAAA
AGGCCACACTACGGGCCGCCGGGAGGAGTCGCGTCCTTCTGCGTCACTCA
CAAGGAGCTGGGCATGATCAACGTGCACGGGCGACTCTGCCAAAGCTCGA
TGTGTGGCAAGCAACCGACGTTCGCTTTTCGCGGCGAGAAGGTGTGTGGT
GACGTCGAAACTTCTCTGGTGAAACTGCCATCAACCGGCCAACTATGGCC
GGAGAGGGCGAAAGACCAGAGCGGGGCGCTACGCGGCGCTCCTCCACAGC
CTTTCCTCCCGTCAGCGACAATCACGCGGCTCACGCACGTTACGAGACTC
TCATCCGCCGCCGCCGCGCCGCCGCTGCCCCTGACTGCCGACACCAAAAA
CCTTACAGCCTCGCTTCTGCGCGGAGCACCAACTTCCACAGATGATTGA
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