mRNA_P-wetherbeei_contig1567.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1567.2.1
Unique NamemRNA_P-wetherbeei_contig1567.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1567.2.1 vs. uniprot
Match: D8LTU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.930e-16
Identity = 55/144 (38.19%), Postives = 70/144 (48.61%), Query Frame = 1 
Query:  571 QRLRPLLDAFVLADPYRTGSLDAAALRDAVAAAGSTAWPELARHTAAAASSVAQPNHHPTTVSQAALAAVPVWAEAPLRTLILRFSDPADGTVCYLDLWIACHYEAIETGAVPPLAELPGCIAARRRGADDPHWRALLAYVDTA 1002
            QRL+PLLD F+L D  RTG+L AA  R  +       WP L     +    V  P           L +    A    R L+ RF D  DG  CYLD+WI  ++    TG + P  ELP     + RGAD  HW+ALL Y++TA
Sbjct: 1801 QRLKPLLDNFILEDTQRTGTLPAADFRRVLCEGHGGLWPGLGTSVRSDIGFVLIPEESAAEFIDPRLTSPENDAA---RALVRRFMDVFDGQACYLDVWITLYHAVFRTGKIVPFTELPSICEMQLRGADTEHWQALLEYLETA 1941
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1567.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTU9_ECTSI1.930e-1638.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1567contigP-wetherbeei_contig1567:2609..3651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1045
Hectar predicted targeting categoryother localisation
Exons1
Cds size1041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.624809-CDS-P-wetherbeei_contig1567:2610..36511683186063.624809-CDS-P-wetherbeei_contig1567:2610..3651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1567 2611..3651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1567.2.1prot_P-wetherbeei_contig1567.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1567 2611..3651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1567.2.1

>prot_P-wetherbeei_contig1567.2.1 ID=prot_P-wetherbeei_contig1567.2.1|Name=mRNA_P-wetherbeei_contig1567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
GGGGGGGGSGGGKGDWIDAELLVEKLLHVVEAADAAAVAAADGLFGDATL
ESCRGLVTVARDISRPTTSATGAAKIGRDDRGGGGADGIGRVSSGSGDKD
AGGGSGGDTADGEDDGKDTAASAGDGGGDSESFLQIKELDSIVNDTNGPP
RQPSTTPATAGAAASGAAPSGGANAIAATEWDRRRALCAAQRLRPLLDAF
VLADPYRTGSLDAAALRDAVAAAGSTAWPELARHTAAAASSVAQPNHHPT
TVSQAALAAVPVWAEAPLRTLILRFSDPADGTVCYLDLWIACHYEAIETG
AVPPLAELPGCIAARRRGADDPHWRALLAYVDTARFPTWRRCGGSGG
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mRNA from alignment at P-wetherbeei_contig1567:2609..3651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1567.2.1 ID=mRNA_P-wetherbeei_contig1567.2.1|Name=mRNA_P-wetherbeei_contig1567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:2609..3651- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCAAAGGTGACTGGAT
CGACGCGGAACTCCTCGTGGAAAAATTGCTGCATGTAGTCGAAGCGGCCG
ACGCCGCTGCGGTAGCGGCTGCTGATGGCCTCTTTGGAGACGCGACGCTG
GAAAGCTGCCGCGGACTGGTCACCGTGGCAAGAGACATCTCCCGGCCTAC
CACGAGCGCGACGGGTGCCGCCAAAATCGGCAGAGACGACCGCGGTGGCG
GTGGTGCCGACGGCATCGGCAGGGTTAGTAGTGGCAGTGGCGACAAAGAT
GCTGGCGGTGGCAGTGGCGGCGACACGGCTGACGGCGAAGACGACGGCAA
GGATACGGCAGCCTCCGCAGGCGACGGCGGAGGCGACAGTGAGAGCTTCC
TACAGATTAAGGAACTCGATAGTATCGTGAATGACACTAATGGGCCGCCG
AGACAACCCAGCACCACCCCTGCCACTGCAGGCGCCGCCGCATCCGGAGC
AGCGCCAAGCGGAGGAGCCAACGCCATCGCAGCGACGGAATGGGACCGGC
GTCGTGCCCTTTGCGCTGCGCAGAGGCTGCGTCCACTTCTGGACGCCTTC
GTCTTGGCGGATCCGTACCGAACCGGCTCGCTGGACGCCGCTGCGCTCCG
TGATGCTGTTGCGGCCGCCGGATCCACCGCCTGGCCCGAGCTCGCCCGCC
ACACGGCCGCAGCCGCTTCTTCCGTGGCCCAACCGAACCACCACCCGACA
ACGGTGTCGCAAGCGGCGCTTGCCGCCGTCCCGGTGTGGGCCGAGGCGCC
GTTGCGGACGCTGATCCTGCGCTTCTCGGACCCAGCGGACGGCACCGTCT
GCTATCTGGACCTGTGGATCGCCTGCCACTACGAGGCGATTGAGACGGGC
GCCGTGCCGCCGCTGGCAGAGCTGCCGGGGTGCATCGCGGCGCGGCGACG
CGGTGCCGATGACCCGCACTGGCGGGCGCTGCTGGCGTACGTCGACACGG
CCCGCTTCCCGACATGGCGCAGGTGCGGTGGGAGCGGCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1567:2609..3651-

>mRNA_P-wetherbeei_contig1567.2.1 ID=mRNA_P-wetherbeei_contig1567.2.1|Name=mRNA_P-wetherbeei_contig1567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig1567:2609..3651- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCAAAGGTGACTGGAT
CGACGCGGAACTCCTCGTGGAAAAATTGCTGCATGTAGTCGAAGCGGCCG
ACGCCGCTGCGGTAGCGGCTGCTGATGGCCTCTTTGGAGACGCGACGCTG
GAAAGCTGCCGCGGACTGGTCACCGTGGCAAGAGACATCTCCCGGCCTAC
CACGAGCGCGACGGGTGCCGCCAAAATCGGCAGAGACGACCGCGGTGGCG
GTGGTGCCGACGGCATCGGCAGGGTTAGTAGTGGCAGTGGCGACAAAGAT
GCTGGCGGTGGCAGTGGCGGCGACACGGCTGACGGCGAAGACGACGGCAA
GGATACGGCAGCCTCCGCAGGCGACGGCGGAGGCGACAGTGAGAGCTTCC
TACAGATTAAGGAACTCGATAGTATCGTGAATGACACTAATGGGCCGCCG
AGACAACCCAGCACCACCCCTGCCACTGCAGGCGCCGCCGCATCCGGAGC
AGCGCCAAGCGGAGGAGCCAACGCCATCGCAGCGACGGAATGGGACCGGC
GTCGTGCCCTTTGCGCTGCGCAGAGGCTGCGTCCACTTCTGGACGCCTTC
GTCTTGGCGGATCCGTACCGAACCGGCTCGCTGGACGCCGCTGCGCTCCG
TGATGCTGTTGCGGCCGCCGGATCCACCGCCTGGCCCGAGCTCGCCCGCC
ACACGGCCGCAGCCGCTTCTTCCGTGGCCCAACCGAACCACCACCCGACA
ACGGTGTCGCAAGCGGCGCTTGCCGCCGTCCCGGTGTGGGCCGAGGCGCC
GTTGCGGACGCTGATCCTGCGCTTCTCGGACCCAGCGGACGGCACCGTCT
GCTATCTGGACCTGTGGATCGCCTGCCACTACGAGGCGATTGAGACGGGC
GCCGTGCCGCCGCTGGCAGAGCTGCCGGGGTGCATCGCGGCGCGGCGACG
CGGTGCCGATGACCCGCACTGGCGGGCGCTGCTGGCGTACGTCGACACGG
CCCGCTTCCCGACATGGCGCAGGTGCGGTGGGAGCGGCGGC
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