mRNA_P-wetherbeei_contig15653.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15653.2.1
Unique NamemRNA_P-wetherbeei_contig15653.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A3C1L702_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L702_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 7.410e-16
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 MRVRRRSVRTTRRVCRRLRRISILAAVTGATAACFHTLMNRCTAVMPVRTS 153
            MRVRRRSVRTTRR+CRRLRR S+ +AVTGATAACFHT  NRCTAV  VR S
Sbjct:    1 MRVRRRSVRTTRRLCRRLRRSSMRSAVTGATAACFHTFTNRCTAVTAVRAS 51          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A539DYG0_9ACTN (Phosphatidylinositol synthase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DYG0_9ACTN)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-15
Identity = 44/50 (88.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:    3 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 152
            LVLT +TAVQRF+KVWKQA+VAP+TAAKIEMRRSRRQ+RRVVRTERRRTR
Sbjct:  136 LVLTLVTAVQRFVKVWKQASVAPLTAAKIEMRRSRRQSRRVVRTERRRTR 185          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A7K1B0D6_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=2 Tax=root TaxID=1 RepID=A0A7K1B0D6_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 5.260e-15
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = -2
Query:    3 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 152
            L LT +TAVQRF+KVWKQA VAPVTAAKIEMRRSRRQ+R+VVRTERRRTR
Sbjct:  173 LALTALTAVQRFVKVWKQAGVAPVTAAKIEMRRSRRQSRKVVRTERRRTR 222          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A6C7EAQ5_ILUCY (Phosphatidylinositol synthase n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EAQ5_ILUCY)

HSP 1 Score: 72.0 bits (175), Expect = 4.890e-14
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = -2
Query:    6 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRT 152
            LVLT ITA+QRF+KVW QAAVAPVT A+IEMRRSRRQ+RRV RTERRRT
Sbjct:  175 LVLTSITAIQRFVKVWSQAAVAPVTQARIEMRRSRRQSRRVARTERRRT 223          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A6I3EXL8_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=3 Tax=root TaxID=1 RepID=A0A6I3EXL8_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 5.250e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = -2
Query:    3 LTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 146
            LT ITAVQRF+KVWKQAAVAPVTA +IE+RRSRRQ+RRVVRTERRRTR
Sbjct:  175 LTFITAVQRFVKVWKQAAVAPVTAERIELRRSRRQSRRVVRTERRRTR 222          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A7W1R630_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1R630_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-12
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:    3 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 152
            L L+ ITAVQRF+KVW+QAA+APVTAA+IEMRRSRRQ+RRV   ERRRTR
Sbjct:  173 LALSSITAVQRFVKVWRQAAIAPVTAARIEMRRSRRQSRRVAXAERRRTR 222          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: UPI0003483B6B (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI0003483B6B)

HSP 1 Score: 68.2 bits (165), Expect = 1.420e-12
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:    3 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 152
            LVLT ITAVQRF KVWKQAAVAPVT  +IEMRRSRR +RRV+RTERRRTR
Sbjct:  175 LVLTTITAVQRFWKVWKQAAVAPVTQERIEMRRSRRASRRVLRTERRRTR 224          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A524B1A9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B1A9_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 5.430e-11
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = -2
Query:    9 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRR 152
            LVL  +TAVQRF+KVWKQAAVAPVTAA+IE+RRSRRQ+RR  R  RRR
Sbjct:  173 LVLVAVTAVQRFVKVWKQAAVAPVTAARIELRRSRRQSRRAHRVARRR 220          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A7W0R0Z7_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R0Z7_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 2.090e-10
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -2
Query:    3 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQTRRVVRTERRRTR 152
            L LT +TA QRF+KVW+QA VAPVT  +IE+RRSRRQ+RRV R ERRRTR
Sbjct:  173 LALTALTATQRFVKVWRQAQVAPVTQERIELRRSRRQSRRVARGERRRTR 222          
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Match: A0A7K1C9R7_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=2 Tax=root TaxID=1 RepID=A0A7K1C9R7_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 7.820e-10
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = -2
Query:   42 LVLTGITAVQRFIKVWKQAAVAPVTAAKIEMRRSRRQ 152
            L+LT +TAVQRF+KVW+QAAVAPVTAAKIE RRSRRQ
Sbjct:  173 LILTSVTAVQRFVKVWRQAAVAPVTAAKIEQRRSRRQ 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15653.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1L702_9ACTN7.410e-1680.39Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A539DYG0_9ACTN1.330e-1588.00Phosphatidylinositol synthase (Fragment) n=1 Tax=A... [more]
A0A7K1B0D6_9ACTN5.260e-1586.00CDP-alcohol phosphatidyltransferase family protein... [more]
A0A6C7EAQ5_ILUCY4.890e-1483.67Phosphatidylinositol synthase n=1 Tax=Ilumatobacte... [more]
A0A6I3EXL8_9ACTN5.250e-1487.50CDP-alcohol phosphatidyltransferase family protein... [more]
A0A7W1R630_9ACTN1.380e-1278.00CDP-alcohol phosphatidyltransferase family protein... [more]
UPI0003483B6B1.420e-1284.00CDP-alcohol phosphatidyltransferase family protein... [more]
A0A524B1A9_9ACTN5.430e-1177.08Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7W0R0Z7_9ACTN2.090e-1072.00CDP-alcohol phosphatidyltransferase family protein... [more]
A0A7K1C9R7_9ACTN7.820e-1083.78CDP-alcohol phosphatidyltransferase family protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15653contigP-wetherbeei_contig15653:1437..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size153
Hectar predicted targeting categorysignal anchor
Exons1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186063.075863-CDS-P-wetherbeei_contig15653:1436..15891683186063.075863-CDS-P-wetherbeei_contig15653:1436..1589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15653 1437..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15653.2.1prot_P-wetherbeei_contig15653.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15653 1437..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15653.2.1

>prot_P-wetherbeei_contig15653.2.1 ID=prot_P-wetherbeei_contig15653.2.1|Name=mRNA_P-wetherbeei_contig15653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MRVRRRSVRTTRRVCRRLRRISILAAVTGATAACFHTLMNRCTAVMPVRT
S
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mRNA from alignment at P-wetherbeei_contig15653:1437..1589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15653.2.1 ID=mRNA_P-wetherbeei_contig15653.2.1|Name=mRNA_P-wetherbeei_contig15653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig15653:1437..1589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTACGGCGGCGCTCGGTGCGCACCACCCGACGCGTCTGCCGGCG ACTGCGACGCATCTCGATCTTGGCTGCCGTCACCGGCGCCACTGCGGCCT GCTTCCACACCTTGATGAACCGTTGCACGGCGGTGATGCCAGTGAGGACG AGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15653:1437..1589+

>mRNA_P-wetherbeei_contig15653.2.1 ID=mRNA_P-wetherbeei_contig15653.2.1|Name=mRNA_P-wetherbeei_contig15653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig15653:1437..1589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTACGGCGGCGCTCGGTGCGCACCACCCGACGCGTCTGCCGGCG
ACTGCGACGCATCTCGATCTTGGCTGCCGTCACCGGCGCCACTGCGGCCT
GCTTCCACACCTTGATGAACCGTTGCACGGCGGTGATGCCAGTGAGGACG
AGC
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