mRNA_P-wetherbeei_contig15648.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15648.1.1
Unique NamemRNA_P-wetherbeei_contig15648.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15648.1.1 vs. uniprot
Match: A0A836CLC9_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.040e-13
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:    4 AFSATRRVRGDGSCFFRAVAFGAIEALAAAPAGGVRLRKVRELLTTLRFDGENEALAASDHAFLLSVLQDICD----SLGQDGLPVSMQKPEFLDAEA-LDRALVRAGRRLVADHIRSHLDEATPGGLTYRELI 390
            +++A RRVRGDG+C++RA+AF A+EA  A       L  +R  L  L F     A     HA L++ LQ + +    + G D       +    D E  +D  L+RA R +VA H+ +  +  TPGGLTYRE+I
Sbjct:  319 SYAAARRVRGDGNCYYRALAFAALEAFLA-ERRWTELSALRARLAALTF---YRAEHGDAHARLMATLQSVQECSGGAAGSDSAAAQALEDALCDKEGGVDTPLIRACRAVVAGHLEALPEAPTPGGLTYREII 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15648.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CLC9_9STRA8.040e-1337.31Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15648contigP-wetherbeei_contig15648:104..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog245174.XP_009269392.1
PFAMsPeptidase_C65
Model size408
Max annot lvl4751|Fungi
KEGG koko:K09602
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-05
EggNOG OGsKOG3991@1|root,KOG3991@2759|Eukaryota,38D99@33154|Opisthokonta,3NZ2J@4751|Fungi,3V14W@5204|Basidiomycota
EC3.4.19.12
Descriptioncysteine proteinase
Cds size408
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186062.9973197-CDS-P-wetherbeei_contig15648:103..5111683186062.9973197-CDS-P-wetherbeei_contig15648:103..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15648 104..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15648.1.1prot_P-wetherbeei_contig15648.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15648 104..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15648.1.1

>prot_P-wetherbeei_contig15648.1.1 ID=prot_P-wetherbeei_contig15648.1.1|Name=mRNA_P-wetherbeei_contig15648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
KAFSATRRVRGDGSCFFRAVAFGAIEALAAAPAGGVRLRKVRELLTTLRF
DGENEALAASDHAFLLSVLQDICDSLGQDGLPVSMQKPEFLDAEALDRAL
VRAGRRLVADHIRSHLDEATPGGLTYRELIAVSGNG
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mRNA from alignment at P-wetherbeei_contig15648:104..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15648.1.1 ID=mRNA_P-wetherbeei_contig15648.1.1|Name=mRNA_P-wetherbeei_contig15648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig15648:104..511+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCTTTCTCAGCAACACGACGCGTGCGGGGAGACGGCAGTTGTTTCTT
TCGTGCCGTGGCTTTTGGGGCTATTGAAGCGCTCGCCGCGGCGCCGGCGG
GCGGCGTTAGGCTTCGGAAGGTTCGAGAACTTTTGACCACCTTGCGGTTC
GACGGCGAGAACGAAGCTTTGGCGGCTAGCGATCATGCATTCCTTTTATC
GGTCCTTCAAGACATTTGCGACTCTCTTGGGCAAGACGGCCTTCCCGTGT
CGATGCAAAAACCTGAATTTCTTGACGCCGAAGCCCTGGACCGAGCGCTA
GTTCGGGCGGGACGGCGCCTCGTCGCCGACCACATCAGGAGTCACCTCGA
CGAGGCGACGCCCGGCGGACTGACCTACCGCGAGCTCATCGCTGTGAGCG
GCAACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15648:104..511+

>mRNA_P-wetherbeei_contig15648.1.1 ID=mRNA_P-wetherbeei_contig15648.1.1|Name=mRNA_P-wetherbeei_contig15648.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig15648:104..511+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCTTTCTCAGCAACACGACGCGTGCGGGGAGACGGCAGTTGTTTCTT
TCGTGCCGTGGCTTTTGGGGCTATTGAAGCGCTCGCCGCGGCGCCGGCGG
GCGGCGTTAGGCTTCGGAAGGTTCGAGAACTTTTGACCACCTTGCGGTTC
GACGGCGAGAACGAAGCTTTGGCGGCTAGCGATCATGCATTCCTTTTATC
GGTCCTTCAAGACATTTGCGACTCTCTTGGGCAAGACGGCCTTCCCGTGT
CGATGCAAAAACCTGAATTTCTTGACGCCGAAGCCCTGGACCGAGCGCTA
GTTCGGGCGGGACGGCGCCTCGTCGCCGACCACATCAGGAGTCACCTCGA
CGAGGCGACGCCCGGCGGACTGACCTACCGCGAGCTCATCGCTGTGAGCG
GCAACGGC
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