mRNA_P-wetherbeei_contig1555.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1555.5.1
Unique NamemRNA_P-wetherbeei_contig1555.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1555.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1555contigP-wetherbeei_contig1555:4926..5620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size697
Hectar predicted targeting categoryother localisation
Exons1
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.624789-CDS-P-wetherbeei_contig1555:4925..56151683186059.624789-CDS-P-wetherbeei_contig1555:4925..5615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1555 4926..5615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.6324685-UTR-P-wetherbeei_contig1555:5615..56201683186059.6324685-UTR-P-wetherbeei_contig1555:5615..5620Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1555 5616..5620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1555.5.1prot_P-wetherbeei_contig1555.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1555 4926..5615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1555.5.1

>prot_P-wetherbeei_contig1555.5.1 ID=prot_P-wetherbeei_contig1555.5.1|Name=mRNA_P-wetherbeei_contig1555.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MSPPKRNAAVAAAAAMTTKGVVPQQATEPTLPPKRKVAGARAAAEAATAA
AAAVATRAAAAAPAELMSPMECRAAMVVAAAGTTKPVASPAAELTPLPKC
KGPGAAAAAVVITKAAAAVAAEPMSSPKRKATTAAAAAATPATPSKRIVA
AGAAAAAAIKTAKATAAALEPAPPLNRTAATVVVATKTAKAAAATHRSIK
AAAAAAPRLASPPKRTGAAAAAALGPASPP
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mRNA from alignment at P-wetherbeei_contig1555:4926..5620-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1555.5.1 ID=mRNA_P-wetherbeei_contig1555.5.1|Name=mRNA_P-wetherbeei_contig1555.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=695bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:4926..5620- (Phaeothamnion wetherbeei SAG_119_79)
AGCCAATGTCACCTCCCAAGCGCAATGCGGCAGTGGCAGCGGCGGCCGCA
ATGACCACAAAGGGCGTGGTGCCACAGCAGGCCACAGAGCCCACGCTGCC
GCCCAAGCGCAAGGTCGCAGGTGCGCGGGCGGCTGCAGAGGCCGCGACAG
CCGCGGCGGCCGCGGTGGCCACAAGGGCGGCTGCGGCGGCACCTGCAGAG
CTGATGTCGCCTATGGAGTGCAGGGCCGCGATGGTGGTGGCTGCCGCAGG
GACCACAAAGCCTGTGGCATCGCCAGCTGCGGAACTGACCCCCCTGCCCA
AATGTAAGGGTCCGGGGGCAGCGGCGGCCGCTGTGGTCATAACAAAGGCA
GCTGCGGCAGTGGCTGCGGAGCCGATGTCGTCTCCGAAGCGCAAGGCCAC
GACGGCGGCAGCAGCCGCGGCAACACCGGCAACACCTTCCAAGCGCATAG
TCGCAGCGGGGGCGGCGGCGGCGGCGGCCATCAAAACCGCCAAAGCGACT
GCAGCGGCACTGGAACCGGCACCACCTCTGAACCGCACAGCCGCAACGGT
TGTGGTGGCCACCAAAACCGCCAAAGCAGCGGCTGCGACCCACAGAAGCA
TCAAGGCAGCGGCGGCGGCGGCGCCACGGCTGGCATCGCCTCCTAAACGC
ACAGGTGCAGCGGCCGCAGCGGCGCTAGGGCCGGCATCGCCTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1555:4926..5620-

>mRNA_P-wetherbeei_contig1555.5.1 ID=mRNA_P-wetherbeei_contig1555.5.1|Name=mRNA_P-wetherbeei_contig1555.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig1555:4926..5620- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACCTCCCAAGCGCAATGCGGCAGTGGCAGCGGCGGCCGCAATGAC
CACAAAGGGCGTGGTGCCACAGCAGGCCACAGAGCCCACGCTGCCGCCCA
AGCGCAAGGTCGCAGGTGCGCGGGCGGCTGCAGAGGCCGCGACAGCCGCG
GCGGCCGCGGTGGCCACAAGGGCGGCTGCGGCGGCACCTGCAGAGCTGAT
GTCGCCTATGGAGTGCAGGGCCGCGATGGTGGTGGCTGCCGCAGGGACCA
CAAAGCCTGTGGCATCGCCAGCTGCGGAACTGACCCCCCTGCCCAAATGT
AAGGGTCCGGGGGCAGCGGCGGCCGCTGTGGTCATAACAAAGGCAGCTGC
GGCAGTGGCTGCGGAGCCGATGTCGTCTCCGAAGCGCAAGGCCACGACGG
CGGCAGCAGCCGCGGCAACACCGGCAACACCTTCCAAGCGCATAGTCGCA
GCGGGGGCGGCGGCGGCGGCGGCCATCAAAACCGCCAAAGCGACTGCAGC
GGCACTGGAACCGGCACCACCTCTGAACCGCACAGCCGCAACGGTTGTGG
TGGCCACCAAAACCGCCAAAGCAGCGGCTGCGACCCACAGAAGCATCAAG
GCAGCGGCGGCGGCGGCGCCACGGCTGGCATCGCCTCCTAAACGCACAGG
TGCAGCGGCCGCAGCGGCGCTAGGGCCGGCATCGCCTCCC
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