mRNA_P-wetherbeei_contig1546.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1546.2.1
Unique NamemRNA_P-wetherbeei_contig1546.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A836CAQ4_9STRA (Tim17-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ4_9STRA)

HSP 1 Score: 254 bits (650), Expect = 8.900e-80
Identity = 148/264 (56.06%), Postives = 176/264 (66.67%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAG--QRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPPXXXXXXXXXXXXXXXXP----QPGLAPPIPMPGVFGSLGGLIGXXXXXXXXXXXXAVDPTAPPQTDITTGRGFDTDTRFRDPFATNDPFVGIDSGGSAESATASLREAEGGEQRRGWFGGMFRR 896
            M +REPCP+R+IDDVG A++FGAVGG +++T+KGARNAP G       S +AVKAR+PVLGGNFAVWGGLFAC DC++ ALR KEDPWNSI SGAATGG+LALRAGPKTAAKNALVGGVLLALIEG GI L++M AQM P                     Q  LAPPIP    FG+ GG               AVDP+AP Q+D+ +G GFDTD+R+ DPFA  DP+    SGG    A  +   A     +RG+FGG+F R
Sbjct:    1 MSEREPCPYRIIDDVGGAYVFGAVGGGVFHTIKGARNAPKGLNNSWXXSVSAVKARAPVLGGNFAVWGGLFACCDCTMAALRRKEDPWNSIASGAATGGILALRAGPKTAAKNALVGGVLLALIEGMGIGLSRMFAQMKPEDMPAILQEGGGAAPDEGGPKQRALAPPIP----FGAHGG------GAPGRRHDDAVDPSAPRQSDVMSGSGFDTDSRYADPFAQADPYA--TSGGLVPEAGGAGAGAPEAPPKRGFFGGLFGR 252          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: D7FI64_ECTSI (Tim17 homolog, mitochondrial inner membrane protein of TIM23 complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI64_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 7.890e-69
Identity = 131/270 (48.52%), Postives = 161/270 (59.63%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQM--PPXXXXXXXXXXXXXXXXPQP----GLAPPIPMPGVFGSLGGLIGXXXXXXXXXXXXAVDPTAPPQTDITTGRGFDTDTRFRDPFATNDPFVG------IDSGGSAESATASLREAEGGEQRRGWFGGMFRR 896
            MGDR+PCP R++ DVG AF FG  GG IW++VKG RN+P GQ   G+  AV  R+PVLGGNFAVWG LF+  DCSLVA+RHKED WN I+SGAATGG+LALRAGP+TAAKNA+VGG LLA+IEG GI L++ +AQ+  PP                PQ     GLAPP+P           +G             VD +A    D+ TG GF+T +RF D  AT DPF        ++ G +   A  +   A  G + RGWFG M  R
Sbjct:    1 MGDRDPCPHRIVGDVGGAFAFGLAGGGIWHSVKGFRNSPKGQGTQGALKAVMYRAPVLGGNFAVWGALFSVCDCSLVAVRHKEDAWNPILSGAATGGILALRAGPRTAAKNAVVGGALLAVIEGMGILLSRYMAQVEPPPMEAGGDAGGAGGGLGAPQAPRPLGLAPPLPP----------VGAPAGYRPMGDGGEVDSSATRSHDVVTGSGFETGSRFEDTLATQDPFASNTGDRYLEGGAAPRGAGDAAAAAAEGAESRGWFGRMIGR 260          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A8J2SJP6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJP6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.100e-64
Identity = 110/171 (64.33%), Postives = 127/171 (74.27%), Query Frame = 3
Query:  123 MGD---REPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPPXXXXXXXXXXXXXXXXP--QPGLAPPIPMP 620
            MGD   REPCP+R++DD+G A+  G VGGSIW+ VKG RNAP G    G+F  V+ R+PV+GGNFAVWGGLFACFDCSLVA+RHKEDPWNSI++GAATGG+LA RAGPK A KNALVGGVLLALIEG GI +TKM+A  PP                P  QPGLAPP+  P
Sbjct:    1 MGDFSGREPCPYRILDDIGGAYAMGCVGGSIWHFVKGWRNAPKGSATSGAFEQVRVRAPVVGGNFAVWGGLFACFDCSLVAVRHKEDPWNSILAGAATGGVLAARAGPKAAGKNALVGGVLLALIEGLGILITKMMA--PPMASKDDLKHGGADPTLPPTQPGLAPPVAFP 169          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: F0Y463_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y463_AURAN)

HSP 1 Score: 203 bits (517), Expect = 1.520e-61
Identity = 97/131 (74.05%), Postives = 112/131 (85.50%), Query Frame = 3
Query:  132 REPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLA 524
            REPCP+R++DD+G A+  GAVGGSIW+ VKG RNAP  Q   G+   VK R+PV+GGNFAVWGGLFACFDCSLVA+RHKEDPWNSI++GAATGG+LA RAGPK A KNALVGGVLLALIEG GI +TKM+A
Sbjct:    1 REPCPYRILDDIGGAYAMGAVGGSIWHFVKGWRNAPKNQGFSGAIEQVKVRAPVVGGNFAVWGGLFACFDCSLVAVRHKEDPWNSILAGAATGGVLAARAGPKAAGKNALVGGVLLALIEGLGILITKMMA 131          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A1E7FD74_9STRA (Tim17-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD74_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.360e-61
Identity = 100/138 (72.46%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPP 536
            M DREPCPWRV+DDVG AF  G +GG +W+++KGAR APAG R  GS +AV AR+PVLGG FAVWGGLFACFDCSL ALR KEDPWNSI+SGAATGG+LA+RAGP+ AA  AL+GGVLLALIEG GI  TKM A   P
Sbjct:    7 MADREPCPWRVVDDVGGAFCMGNIGGGMWHSIKGARMAPAGARFAGSLSAVSARAPVLGGQFAVWGGLFACFDCSLTALRQKEDPWNSIVSGAATGGVLAVRAGPQAAASAALIGGVLLALIEGMGIMFTKMTAPPSP 144          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A7S1Y2X7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2X7_9STRA)

HSP 1 Score: 203 bits (517), Expect = 4.920e-60
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPP 536
            M DREPCPWR++DDVG AF  GA+GG +W++++GAR APAG R  GS +AV+ARSPVLGG FAVWGG+FAC DCSL A+R KEDPWNSI+SGAATGG+LA RAGP+  A  A+VGGVLLALIEGFGI  TKM A   P
Sbjct:    7 MADREPCPWRIVDDVGGAFCMGAIGGGVWHSIRGARLAPAGARFAGSMSAVQARSPVLGGQFAVWGGIFACCDCSLTAVRQKEDPWNSIISGAATGGILAARAGPRAMASAAVVGGVLLALIEGFGIMFTKMTAPAVP 144          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A7S0XM34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XM34_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.520e-59
Identity = 97/138 (70.29%), Postives = 112/138 (81.16%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPP 536
            M DREPCPWR+IDDVG AF  G +GG +W+++KGAR AP+G RL GS +AV+AR+PVLGG FA+WGG+FACFDCSL A+R KEDPWNSI+SGAATGG LALRAGP+ AA  A VGGVLLALIEG GI   KM A   P
Sbjct:    7 MADREPCPWRIIDDVGGAFCMGNIGGGMWHSIKGARMAPSGARLAGSLSAVQARAPVLGGQFAIWGGIFACFDCSLTAIRQKEDPWNSIISGAATGGTLALRAGPQAAASAAAVGGVLLALIEGMGIMFGKMFAPPSP 144          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A1Z5KI64_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI64_FISSO)

HSP 1 Score: 198 bits (504), Expect = 2.310e-58
Identity = 96/138 (69.57%), Postives = 114/138 (82.61%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPP 536
            + DREPCP+R+IDD+G AF  G +GG IW++VKGAR APAG R+ GS +AV ARSPVLGG FAVWGGLFAC DC+L A+R KEDPWNSI+SGAATGG+LA RAGP+ AA  A+VGGVLLALIEG GI +++ LA  PP
Sbjct:    6 IADREPCPYRIIDDIGGAFCMGCIGGGIWHSVKGARLAPAGARMAGSMSAVIARSPVLGGQFAVWGGLFACCDCTLTAVRQKEDPWNSIISGAATGGILAARAGPRAAASAAVVGGVLLALIEGMGIMISRALAPAPP 143          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A6S8D9L3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8D9L3_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.760e-58
Identity = 100/163 (61.35%), Postives = 119/163 (73.01%), Query Frame = 3
Query:  132 REPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPPXXXXXXXXXXXXXXXXPQPGLAPPIPMP 620
            REPCP+R+IDDVG A+  GA+GGSIW+ VKG RN+P G  L G+   ++ R+P++GGNFAVWGGLFA FDCSL A+R KEDPWNSI++GAATGG+LA RAGPK AAKNA+VGG+LLALIEG GI +TK  A   P                 Q GLAPPIP P
Sbjct:    8 REPCPYRIIDDVGGAYAMGAIGGSIWHFVKGWRNSPRGSALAGAVDQMQVRAPIVGGNFAVWGGLFAVFDCSLSAVRQKEDPWNSILAGAATGGVLAARAGPKAAAKNAVVGGILLALIEGLGILITKAFA---PPVPSKDDLKHGDGGAPAQVGLAPPIPFP 167          
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Match: A0A7S1ZR17_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZR17_TRICV)

HSP 1 Score: 197 bits (500), Expect = 4.490e-57
Identity = 110/225 (48.89%), Postives = 132/225 (58.67%), Query Frame = 3
Query:  123 MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAAVKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLALRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPPXXXXXXXXXXXXXXXXPQPGLAPPIPMPGVFGSLGGLIGXXXXXXXXXXXXAVDPTAPPQTDITTGRGFDTDTRFRDPFATNDPFVG 797
            + DREPCPWR++DDVG AF  GA+GG I++ +KG+ NAP G R++G   A+ AR PVLGG FAVWGGLFAC DC+L ++R KEDPWNSI SGA TGG+LA RAGPK AA  A+VGGVLLALIEG GI  TKM                          ++PP+P P ++   G                AVDPTAPP      GR          P A +DPF G
Sbjct:   48 IADREPCPWRIVDDVGGAFCMGAIGGGIFHVIKGSLNAPKGSRMHGGVTAMAARGPVLGGQFAVWGGLFACCDCTLTSIRQKEDPWNSITSGAVTGGVLAARAGPKAAASAAVVGGVLLALIEGMGIMFTKM--------------------------MSPPLPTPDMYEQAG----------------AVDPTAPPTAGGLMGR-------TAPPSAPSDPFSG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1546.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAQ4_9STRA8.900e-8056.06Tim17-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
D7FI64_ECTSI7.890e-6948.52Tim17 homolog, mitochondrial inner membrane protei... [more]
A0A8J2SJP6_9STRA3.100e-6464.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y463_AURAN1.520e-6174.05Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1E7FD74_9STRA2.360e-6172.46Tim17-domain-containing protein n=1 Tax=Fragilario... [more]
A0A7S1Y2X7_9STRA4.920e-6070.29Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0XM34_9STRA1.520e-5970.29Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1Z5KI64_FISSO2.310e-5869.57Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6S8D9L3_9STRA5.760e-5861.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1ZR17_TRICV4.490e-5748.89Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1546contigP-wetherbeei_contig1546:887..3121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FI64
Preferred nameTIMM17A
PFAMsTim17
Model size1182
Max annot lvl2759|Eukaryota
KEGG koko:K16608,ko:K17795,ko:K19382
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005744,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0010954,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019222,GO:0019866,GO:0019867,GO:0019899,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030162,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070613,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:1903317,GO:1903319,GO:1904680,GO:1990542
Exons2
Evalue5.88e-72
EggNOG OGsCOG5596@1|root,KOG1652@2759|Eukaryota
Ec32 ortholog descriptionTim17 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-10_003710.1
Descriptionprotein import into mitochondrial matrix
Cds size780
COG categoryU
BRITEko00000,ko01000,ko02000,ko03029,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.73818-UTR-P-wetherbeei_contig1546:886..11661683186056.73818-UTR-P-wetherbeei_contig1546:886..1166Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1546 887..1166 -
1683186056.7673686-UTR-P-wetherbeei_contig1546:2999..31211683186056.7673686-UTR-P-wetherbeei_contig1546:2999..3121Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1546 3000..3121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.7515454-CDS-P-wetherbeei_contig1546:1166..17901683186056.7515454-CDS-P-wetherbeei_contig1546:1166..1790Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1546 1167..1790 -
1683186056.7595625-CDS-P-wetherbeei_contig1546:2843..29991683186056.7595625-CDS-P-wetherbeei_contig1546:2843..2999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1546 2844..2999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1546.2.1prot_P-wetherbeei_contig1546.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1546 1167..2999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1546.2.1

>prot_P-wetherbeei_contig1546.2.1 ID=prot_P-wetherbeei_contig1546.2.1|Name=mRNA_P-wetherbeei_contig1546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MGDREPCPWRVIDDVGSAFLFGAVGGSIWYTVKGARNAPAGQRLYGSFAA
VKARSPVLGGNFAVWGGLFACFDCSLVALRHKEDPWNSIMSGAATGGMLA
LRAGPKTAAKNALVGGVLLALIEGFGIALTKMLAQMPPPEEIPMGGGGGG
GAAPPQPGLAPPIPMPGVFGSLGGLIGGGGGGGGGGGGGAVDPTAPPQTD
ITTGRGFDTDTRFRDPFATNDPFVGIDSGGSAESATASLREAEGGEQRRG
WFGGMFRRR*
back to top

mRNA from alignment at P-wetherbeei_contig1546:887..3121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1546.2.1 ID=mRNA_P-wetherbeei_contig1546.2.1|Name=mRNA_P-wetherbeei_contig1546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2235bp|location=Sequence derived from alignment at P-wetherbeei_contig1546:887..3121- (Phaeothamnion wetherbeei SAG_119_79)
AGAGAATCCTGCCGCCGCCGCCGCCGCCGCGGTGCCTTCCGCTTGGTGCT GCGTCGTCATCATCAAACTCACTGACGCAAAATCGTCGTGTGGCGGCTTT TTGCAGCTCGGCGCCTTAAAGGATGGGAGACAGAGAGCCGTGCCCCTGGC GCGTCATCGACGACGTGGGGAGCGCCTTTCTCTTCGGCGCGGTAGGCGGC TCGATATGGTACACCGTCAAAGGGGCCCGGAACGCCCCGGCGGGACAGCG ATTGTACGGCTCCTTCGCCGCTGTAAAGGTGAGTAGTGTCTGAGATGCCT TCTACTGTTTTTCGCGTTTGTAAACTTTGTGAGCGTTCGGGCAAAGGCAA ACTGGGTTCTTTTGTTGTGTGTCGGCAGCAACAGTGGTGGTGGCAGAGCC GGTTCCGGCGTTCGCACGAACGGCAATATTGACGGCTGTGCCTACAGCGA ACGTCTGCATTATCGCCGTTTATCACGTTACAACGACCGTTATTGATGGT GGCGTCGGCGAAGGGAGCCAGGCTTGCAGATTTTGCGTAAATCGCCGCAA ACTCGAGCTGTCCGTTGGCAGATGCTATGTCGCGTGAGCGAAACTTGGAA ACTTGGGTCGGGGGAACTTATGGTCAGTGATATTCGGCATCGTAGCAGCT TGCCCTCGATATCATGCCGTGTCTTTGTCTAGTACTTTGTCATTACGCAT TTCCTGGCGATTTTTCTGCACCGCTAGAGCGAAGCTCAGTGCAATAGGGT GTTTGCGCTAAACAAAATTCGCTTACGTTACGGCGGAGGAAAATAAGACG AATTTGGGTTAAGCCAAATTCATTTTTGCGTGTTTGCGCGTTTGGAGGAA TTCTCATAAAATGAGCGCGGCAGCATAATACTACACTGTAGAGTCCTTGG CGCATGGAAATTTTGAATTATCACAGTAAACAGGCCTCAGAGGAGCACTT CGGAGCCGGAAACACCCCTCTAGCAGCCTGCACCCTTACTAACCTTTTAA AACAAAGGGCGCCATCTTTCCTGCTTTTTCAAATTAACGCTAACTGGTTC GGCTTACGGCCTCCAAAAATCCAAATTAACGTTCATCGATTAACGCTAAT TCGAAAAGTAACGGCTTCAACGGAAAATTTTAACCCTAATTTACACTTGC GCGAACACTCTAATGTTCGATTTGCTTCTTTCTTATCTGCTTGCTGCAAT GCCGTTCACCTCCCACCTCTTGCTCCGTTCGGTCTCACCGCTGCTGCCGC CGTCATTGCTGCCGCCGCGATTGCCGCCACCATTGCTGCTCTCGCTCTCG TTTCCGCCCGCCTCCATTTTTTCTTCGCCAGGCACGGAGCCCGGTGCTGG GCGGCAACTTTGCAGTGTGGGGCGGCCTCTTTGCGTGCTTCGACTGCAGC CTGGTGGCGCTTCGCCACAAGGAGGACCCCTGGAACTCCATCATGTCCGG AGCGGCCACCGGCGGGATGCTGGCGCTGCGGGCGGGCCCGAAAACGGCTG CCAAAAATGCGCTGGTAGGCGGCGTCCTGCTGGCGCTGATCGAGGGGTTT GGCATCGCGCTGACGAAGATGCTGGCGCAAATGCCGCCGCCGGAGGAGAT CCCCATGGGCGGCGGCGGCGGAGGAGGAGCAGCGCCGCCGCAGCCGGGGC TGGCGCCCCCGATCCCGATGCCCGGCGTTTTTGGGTCGCTGGGCGGGCTG ATTGGCGGCGGCGGCGGTGGGGGCGGAGGCGGCGGCGGTGGGGCGGTGGA CCCGACGGCCCCACCACAGACTGATATCACAACGGGACGTGGTTTTGATA CGGACACGCGGTTCCGGGATCCGTTCGCCACCAACGACCCATTTGTGGGC ATCGACAGCGGCGGCAGCGCGGAGTCGGCAACGGCGAGTTTGAGAGAAGC GGAAGGAGGGGAGCAGCGGCGGGGCTGGTTTGGGGGAATGTTCCGACGGC GCTGAGGAGACGATTGGCGTCGGGGGTGGCGGTGGCGTCGGCGGCGGGTT GTAATGACCTCTTTGATCCACTCAGGCCCGGTTCAAGCAGGGCATAGAGC GACACCATGGGCGCTCTGCTCCTCCATAGGCCGCCTCTGGAACGTGCCAC CATGCGGCGCGTCGCGCCGTGGGCAGCCCTGAAGAGCATATGGAAGTGCG CTCCGCTTTGGATGGCGGCATAAGGTAATGCAACTGAAGCGTTTTTGGAC CTCGTAACAGCCACAATCTAAACTGAAGCCATGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1546:887..3121-

>mRNA_P-wetherbeei_contig1546.2.1 ID=mRNA_P-wetherbeei_contig1546.2.1|Name=mRNA_P-wetherbeei_contig1546.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig1546:887..3121- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGACAGAGAGCCGTGCCCCTGGCGCGTCATCGACGACGTGGGGAG
CGCCTTTCTCTTCGGCGCGGTAGGCGGCTCGATATGGTACACCGTCAAAG
GGGCCCGGAACGCCCCGGCGGGACAGCGATTGTACGGCTCCTTCGCCGCT
GTAAAGGCACGGAGCCCGGTGCTGGGCGGCAACTTTGCAGTGTGGGGCGG
CCTCTTTGCGTGCTTCGACTGCAGCCTGGTGGCGCTTCGCCACAAGGAGG
ACCCCTGGAACTCCATCATGTCCGGAGCGGCCACCGGCGGGATGCTGGCG
CTGCGGGCGGGCCCGAAAACGGCTGCCAAAAATGCGCTGGTAGGCGGCGT
CCTGCTGGCGCTGATCGAGGGGTTTGGCATCGCGCTGACGAAGATGCTGG
CGCAAATGCCGCCGCCGGAGGAGATCCCCATGGGCGGCGGCGGCGGAGGA
GGAGCAGCGCCGCCGCAGCCGGGGCTGGCGCCCCCGATCCCGATGCCCGG
CGTTTTTGGGTCGCTGGGCGGGCTGATTGGCGGCGGCGGCGGTGGGGGCG
GAGGCGGCGGCGGTGGGGCGGTGGACCCGACGGCCCCACCACAGACTGAT
ATCACAACGGGACGTGGTTTTGATACGGACACGCGGTTCCGGGATCCGTT
CGCCACCAACGACCCATTTGTGGGCATCGACAGCGGCGGCAGCGCGGAGT
CGGCAACGGCGAGTTTGAGAGAAGCGGAAGGAGGGGAGCAGCGGCGGGGC
TGGTTTGGGGGAATGTTCCGACGGCGCTGA
back to top