mRNA_P-wetherbeei_contig15456.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15456.1.1
Unique NamemRNA_P-wetherbeei_contig15456.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A835Z8V9_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.660e-14
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:  107 APEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAW 307
            AP  F C LS+R+MR PVRTPYG+V++  +I +WL+QQG I PLTGQPL  +EL++D  L + I +W
Sbjct:  342 APPNFKCNLSRRLMRDPVRTPYGNVYDRAMIAMWLQQQGSIDPLTGQPLVEAELKEDGELKSAIESW 408
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A7S3ZT12_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.240e-13
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAW 307
            P EF C +SKR+MR P+R+PYG V E ++I+ W  + G +CPLTGQPLS ++L+ D  L  +I  W
Sbjct:  486 PAEFACAISKRMMREPMRSPYGHVVEAKVIQAWFAKNGSVCPLTGQPLSAAQLKPDKELRQKITQW 551
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A7S4DAJ1_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAJ1_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-12
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAW 307
            P EF C ++  +M+ PV++P G VFE+  I LWLR QG +CP+TGQPL   +L  D+ L  RI  W
Sbjct:   73 PREFTCAINGHLMKEPVKSPGGHVFEKSTITLWLRMQGSVCPITGQPLVQEDLEPDEELKTRIMRW 138
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A5D6YDZ0_9STRA (U-box domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDZ0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.500e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 2 
Query:  107 APEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAWR 310
            AP+EF C +S++V++ P+R+PYG VFE ++I  W R  G  CPLTG+PL+  +L +D+ L ARI  W+
Sbjct:  470 APQEFKCAVSRKVLKDPLRSPYGQVFERQVIEAWFRDFGNRCPLTGEPLTPQQLVRDEGLKARIREWK 537
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A1V9Y7V6_9STRA (U-box domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7V6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.390e-11
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAW 307
            P EFLC ++K++++ PV++PYG VFE  +I  W+   G  CP+TG+PL+  +L  DD L + I AW
Sbjct:  416 PPEFLCAITKKLLKDPVKSPYGHVFERAVIEKWINNYGSRCPVTGEPLALGQLVADDALLSEIEAW 481
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A1V9ZB01_9STRA (U-box domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB01_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.560e-11
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAW 307
            P EF C ++K++++ PV++PYG VFE  +I  W+   G  CP+TG+PL  ++L  DD L A IAAW
Sbjct:  417 PPEFECAITKKLLKDPVKSPYGHVFERAVIEKWVTNYGSRCPVTGEPLGINQLVPDDALRAEIAAW 482
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A6H5LKA3_9PHAE (U-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKA3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.950e-10
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAWR 310
            P+EFLC ++  +M+ PVR+P+G VFE   I LWL  +G +CP +G+PLS  EL  ++ L  RI  WR
Sbjct:  737 PKEFLCAINGHMMKLPVRSPHGHVFELSTILLWLESRGRVCPFSGKPLSKEELVPEEELRTRIMRWR 803
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A3F2S482_9STRA (U-box domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S482_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.050e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAWR 310
            P EF C +S ++M+ P+R+P+G VFE ++I  W R  G  CPLTGQPL+  EL  DD L   I  W+
Sbjct:  501 PPEFKCAVSLKLMKKPLRSPFGQVFERQVIEAWFRDFGNRCPLTGQPLTLQELVSDDKLREEIHEWK 567
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: G4ZFA4_PHYSP (U-box domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZFA4_PHYSP)

HSP 1 Score: 71.6 bits (174), Expect = 3.650e-10
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAWR 310
            P EF C +S ++M+ P+R+PYG VFE ++I  W R  G  CPLTG+PL+  +L  D+TL   I  W+
Sbjct:  403 PPEFKCAVSLKLMKDPMRSPYGQVFERQVIEAWFRDFGNRCPLTGEPLTLLQLVSDETLREEIREWK 469
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BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Match: A0A8K1C971_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C971_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 3.810e-10
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  110 PEEFLCGLSKRVMRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAARIAAWR 310
            P E+ C ++ ++++ P+R+PYG VFE  ++  W R  G  CPLTGQPLS +E+  DD L A I  W+
Sbjct:  435 PPEYKCAVTLKLLKDPLRSPYGQVFEREVLEAWFRDFGNRCPLTGQPLSMAEIIPDDKLRAEIRNWK 501
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15456.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8V9_9STRA3.660e-1455.22Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A7S3ZT12_9STRA6.240e-1350.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DAJ1_HETAK1.150e-1248.48Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A5D6YDZ0_9STRA1.500e-1248.53U-box domain-containing protein n=1 Tax=Pythium br... [more]
A0A1V9Y7V6_9STRA6.390e-1145.45U-box domain-containing protein n=1 Tax=Thraustoth... [more]
A0A1V9ZB01_9STRA8.560e-1146.97U-box domain-containing protein n=1 Tax=Achlya hyp... [more]
A0A6H5LKA3_9PHAE1.950e-1047.76U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A3F2S482_9STRA3.050e-1047.76U-box domain-containing protein n=3 Tax=Phytophtho... [more]
G4ZFA4_PHYSP3.650e-1046.27U-box domain-containing protein n=5 Tax=Phytophtho... [more]
A0A8K1C971_PYTOL3.810e-1044.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15456contigP-wetherbeei_contig15456:82..1063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.8470
PFAMsMyosin_head
Model size982
Max annot lvl4776|Peronosporales
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-08
EggNOG OGsCOG0666@1|root,COG5022@1|root,KOG0160@2759|Eukaryota,KOG4177@2759|Eukaryota,3Q93Z@4776|Peronosporales
DescriptionMyosin. Large ATPases.
Cds size576
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.643364-UTR-P-wetherbeei_contig15456:81..2261683186056.643364-UTR-P-wetherbeei_contig15456:81..226Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15456 82..226 +
1683186056.662102-UTR-P-wetherbeei_contig15456:802..10631683186056.662102-UTR-P-wetherbeei_contig15456:802..1063Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15456 803..1063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.6530375-CDS-P-wetherbeei_contig15456:226..8021683186056.6530375-CDS-P-wetherbeei_contig15456:226..802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15456 227..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15456.1.1prot_P-wetherbeei_contig15456.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15456 227..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15456.1.1

>prot_P-wetherbeei_contig15456.1.1 ID=prot_P-wetherbeei_contig15456.1.1|Name=mRNA_P-wetherbeei_contig15456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MRSPVRTPYGSVFEERLIRLWLRQQGPICPLTGQPLSGSELRQDDTLAAR
IAAWRDSAGSGVAVAVPAGVVGPGSLEGQAGASRRLSVGGSGRGGSSNGG
DAAVVVGKENELGGAKDGPTDGGTATSAVMAAEPEAEDEGEWRWGEGGRD
GGGGRNKGSGTVAAAVPVGRRAPALGSGAKVGTEDDSLYDF*
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mRNA from alignment at P-wetherbeei_contig15456:82..1063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15456.1.1 ID=mRNA_P-wetherbeei_contig15456.1.1|Name=mRNA_P-wetherbeei_contig15456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=982bp|location=Sequence derived from alignment at P-wetherbeei_contig15456:82..1063+ (Phaeothamnion wetherbeei SAG_119_79)
CGGTGACGGCAGCGGCATTCACAGCCCCGGCGGCAGCGGCGGCGGCGGCG
GCGGCGCCGCCGGCGCCGGCGTGGTCGATGCCGGGGCCGCGGCGGAAGCT
GCGGCGGCGCCGGAGGAGTTCCTCTGCGGGTTGTCGAAGCGCGTCATGCG
GTCGCCGGTCCGGACGCCGTATGGCAGCGTGTTCGAGGAGCGGTTGATCC
GGTTGTGGCTGCGGCAGCAGGGTCCTATCTGCCCGCTGACGGGCCAGCCG
CTGTCTGGAAGCGAGCTGCGGCAAGACGACACGTTGGCGGCGCGCATCGC
TGCCTGGCGCGACAGCGCTGGCAGCGGCGTGGCGGTGGCGGTGCCTGCGG
GGGTGGTGGGGCCAGGGAGCCTGGAGGGGCAAGCGGGAGCTTCCAGGAGG
CTGAGCGTAGGAGGCAGCGGGCGTGGCGGCAGCAGCAACGGCGGTGATGC
AGCAGTGGTGGTGGGGAAAGAGAATGAACTTGGAGGCGCCAAAGACGGCC
CCACGGACGGCGGTACCGCAACGTCGGCAGTGATGGCAGCCGAGCCGGAG
GCGGAGGACGAGGGAGAGTGGCGGTGGGGCGAAGGGGGAAGGGATGGCGG
CGGCGGGCGGAACAAGGGCAGCGGTACAGTGGCCGCGGCGGTTCCAGTGG
GACGCCGGGCCCCCGCGCTCGGCTCGGGGGCCAAGGTAGGCACGGAGGAC
GATTCTCTGTATGACTTCTAAAAGCGATGCCGCAGGGGAAGGCACCTTGG
ATTTCCGGTGCAGCAGACAAATAAGGAGCTTTCGCGCTCGATTTGCGCAA
ATAACCGAGGCCCCTTGCAGCACAACACAAACTTGAAAGAGACACATCTT
GGGGGTGACGGATCACGGGCCTTTCGCTCCGACGAGAGAGCTGCCGGAAG
TGGAAGTGTACCTGCTTTCTCGTGACAGAAAATCCAACCCTTTCCCCGAA
ATGAGGGAGGCAGCAGCCTGGAAGAATGTGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15456:82..1063+

>mRNA_P-wetherbeei_contig15456.1.1 ID=mRNA_P-wetherbeei_contig15456.1.1|Name=mRNA_P-wetherbeei_contig15456.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig15456:82..1063+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTCGCCGGTCCGGACGCCGTATGGCAGCGTGTTCGAGGAGCGGTT
GATCCGGTTGTGGCTGCGGCAGCAGGGTCCTATCTGCCCGCTGACGGGCC
AGCCGCTGTCTGGAAGCGAGCTGCGGCAAGACGACACGTTGGCGGCGCGC
ATCGCTGCCTGGCGCGACAGCGCTGGCAGCGGCGTGGCGGTGGCGGTGCC
TGCGGGGGTGGTGGGGCCAGGGAGCCTGGAGGGGCAAGCGGGAGCTTCCA
GGAGGCTGAGCGTAGGAGGCAGCGGGCGTGGCGGCAGCAGCAACGGCGGT
GATGCAGCAGTGGTGGTGGGGAAAGAGAATGAACTTGGAGGCGCCAAAGA
CGGCCCCACGGACGGCGGTACCGCAACGTCGGCAGTGATGGCAGCCGAGC
CGGAGGCGGAGGACGAGGGAGAGTGGCGGTGGGGCGAAGGGGGAAGGGAT
GGCGGCGGCGGGCGGAACAAGGGCAGCGGTACAGTGGCCGCGGCGGTTCC
AGTGGGACGCCGGGCCCCCGCGCTCGGCTCGGGGGCCAAGGTAGGCACGG
AGGACGATTCTCTGTATGACTTCTAA
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