mRNA_P-wetherbeei_contig1544.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1544.2.1
Unique NamemRNA_P-wetherbeei_contig1544.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: D8LJR4_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.500e-23
Identity = 53/70 (75.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDV--GDDSSDDENYAYR 204
            VKSAEQKTSKR ALEVST  TTYFMYA  EK+KDDWIGAIG+AIVQ+S+TYQ D   GD  SDDE Y YR
Sbjct:   74 VKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDE-YDYR 142          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: A0A835ZE28_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE28_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.900e-21
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDDENYAYR 204
            VKSAEQKT KR ALEVSTQ TT+FM+A  EK+KDDWIGAIG+AIVQSS+TYQ++     SD + Y Y+
Sbjct:   73 VKSAEQKTHKRNALEVSTQDTTFFMFAGTEKEKDDWIGAIGRAIVQSSSTYQNEEASGDSDSD-YEYQ 139          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: K8YTU8_NANGC (1-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTU8_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDDE 189
            VKSAE K  KR ALEVST  TT+ MYA  EK+KDDWIGA+G+AIV+SS TY  +VG+   +D+
Sbjct:   23 VKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDD 85          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: W7TJA6_9STRA (Pleckstrin like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.110e-17
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDDE 189
            VKSAE K  KR ALEVST  TT+ MYA  EK+KDDWIGA+G+AIV+SS TY  +VG+   +D+
Sbjct:   69 VKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDD 131          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: F0Y7C7_AURAN (PH domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C7_AURAN)

HSP 1 Score: 75.5 bits (184), Expect = 3.610e-16
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSD 183
            VKSAE K  KR ALEVST  TTY M+A +EK+KDDWIGAIG+AIV+ S+TY +D G +  D
Sbjct:   45 VKSAEYKAHKRNALEVSTPDTTYLMFADSEKEKDDWIGAIGRAIVRCSSTYTNDDGMEGDD 105          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: A0A7S4A7D4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7D4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.980e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDDE 189
            VKSAE K  +R+ALEVSTQ TTY M A  EK+KDDWIGAIG+AIV+ S T+ +D G D + D+
Sbjct:   68 VKSAEFKARRRHALEVSTQDTTYLMCADTEKEKDDWIGAIGRAIVRCSATFTNDDGMDGASDD 130          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: A0A7S2AKD7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.020e-15
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDD 186
            VKSAE K  K+ ALEVST  TT+ M+A  EK+KDDWIGAIG+AIV+ S+TY ++ G ++ DD
Sbjct:   86 VKSAETKAGKKNALEVSTADTTFLMFADTEKEKDDWIGAIGRAIVRCSSTYTEEDGRENDDD 147          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: K3WT41_GLOUD (PH domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=K3WT41_GLOUD)

HSP 1 Score: 73.2 bits (178), Expect = 4.500e-15
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSS 180
            VKSAE+KT+KR+  EV+T  +TY+MYA  EK KD+WIGAIG+AIV+ S+++  D  D+SS
Sbjct:   63 VKSAEEKTNKRFCFEVATPDSTYYMYAENEKQKDEWIGAIGRAIVKFSSSFTGDQDDESS 122          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: A0A1V9ZLX5_9STRA (PH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLX5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-14
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDVGDDSSDDE 189
            VKSAE+KT+KR+  EV+T  +TY+M+A +EK KD+WIGAIG+AIV+ S+++    GDD  DD+
Sbjct:   60 VKSAEEKTNKRFCFEVATPESTYYMHAESEKQKDEWIGAIGRAIVKFSSSF---TGDDGYDDQ 119          
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Match: A0A7S1G2Q7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2Q7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-14
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 VKSAEQKTSKRYALEVST-QATTYFMYAAAEKDKDDWIGAIGKAIVQSSNTYQDDV 165
            VKSAE KT ++ +LEVST   +T++MYA  EK+KDDWIGAIG+AIV+ S+TYQDD 
Sbjct:   79 VKSAEMKTGRKNSLEVSTGDGSTFWMYAETEKEKDDWIGAIGRAIVRCSSTYQDDA 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1544.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR4_ECTSI2.500e-2375.71PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZE28_9STRA8.900e-2167.65PH domain-containing protein n=1 Tax=Tribonema min... [more]
K8YTU8_NANGC1.560e-1761.901-like protein n=1 Tax=Nannochloropsis gaditana (s... [more]
W7TJA6_9STRA5.110e-1761.90Pleckstrin like protein n=2 Tax=Monodopsidaceae Ta... [more]
F0Y7C7_AURAN3.610e-1663.93PH domain-containing protein (Fragment) n=1 Tax=Au... [more]
A0A7S4A7D4_9STRA1.980e-1561.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2AKD7_9STRA3.020e-1559.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WT41_GLOUD4.500e-1558.33PH domain-containing protein n=23 Tax=Oomycota Tax... [more]
A0A1V9ZLX5_9STRA1.250e-1455.56PH domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A7S1G2Q7_9STRA2.080e-1464.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1544contigP-wetherbeei_contig1544:6376..6832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJR4
PFAMsPH
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Exons2
Evalue4.1e-24
EggNOG OGs29TN5@1|root,2RXGP@2759|Eukaryota
Descriptionphosphatidylinositol-3-phosphate binding
Cds size207
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.3160846-CDS-P-wetherbeei_contig1544:6375..64701683186056.3160846-CDS-P-wetherbeei_contig1544:6375..6470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1544 6376..6470 -
1683186056.327104-CDS-P-wetherbeei_contig1544:6720..68321683186056.327104-CDS-P-wetherbeei_contig1544:6720..6832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1544 6721..6832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1544.2.1prot_P-wetherbeei_contig1544.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1544 6376..6832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1544.2.1

>prot_P-wetherbeei_contig1544.2.1 ID=prot_P-wetherbeei_contig1544.2.1|Name=mRNA_P-wetherbeei_contig1544.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
VKSAEQKTSKRYALEVSTQATTYFMYAAAEKDKDDWIGAIGKAIVQSSNT
YQDDVGDDSSDDENYAYR*
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mRNA from alignment at P-wetherbeei_contig1544:6376..6832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1544.2.1 ID=mRNA_P-wetherbeei_contig1544.2.1|Name=mRNA_P-wetherbeei_contig1544.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=457bp|location=Sequence derived from alignment at P-wetherbeei_contig1544:6376..6832- (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGTCGGCGGAGCAGAAGACAAGCAAACGGTACGCGCTGGAGGTGTC GACGCAGGCGACGACGTATTTCATGTACGCCGCGGCGGAGAAGGACAAGG ACGACTGGATAGGTGAGGAAGCAAGAAACAGAGAAAGGGAATGGGTGTAG TTTCACCTTTCGTGCACTGAATCAGCCCGGCGTACAGTTCCTAATCTCCG CTCTACTGTGTCTCTTGTTCAGATCGCACGGAAACAGGAGTTCTTTTAGC CTTGTTCCCTCTTCAAATGGTACCACCGGTACTAGACTTCTTTTGCAGCC TTAGCTAAACGATGTTTACATCGCTTCCCGTGCAAGCCTTCCCGTTCCTC ACCCTGCTGCAGGCGCGATCGGCAAGGCAATCGTGCAGTCGTCGAACACG TACCAGGACGATGTCGGCGACGATTCGTCCGATGACGAAAACTACGCCTA CCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1544:6376..6832-

>mRNA_P-wetherbeei_contig1544.2.1 ID=mRNA_P-wetherbeei_contig1544.2.1|Name=mRNA_P-wetherbeei_contig1544.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig1544:6376..6832- (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGTCGGCGGAGCAGAAGACAAGCAAACGGTACGCGCTGGAGGTGTC
GACGCAGGCGACGACGTATTTCATGTACGCCGCGGCGGAGAAGGACAAGG
ACGACTGGATAGGCGCGATCGGCAAGGCAATCGTGCAGTCGTCGAACACG
TACCAGGACGATGTCGGCGACGATTCGTCCGATGACGAAAACTACGCCTA
CCGATGA
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