mRNA_P-wetherbeei_contig15420.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15420.2.1
Unique NamemRNA_P-wetherbeei_contig15420.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A7X8XME5_9BURK (Segregation/condensation protein A n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XME5_9BURK)

HSP 1 Score: 136 bits (343), Expect = 4.890e-37
Identity = 88/156 (56.41%), Postives = 109/156 (69.87%), Query Frame = 1
Query:   16 SHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLP--PVEEED---GYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWLELDVSVEAL 468
            S +QV L QFEGPLDLLL LV   +L+ITEI+LA+VAQQY  YL T+ RL++E+ESSY+VVFAQLLE+KSRLLLP  P  +E     +G E+ S  A    DP   LV++L  Y LVKEAADW + +EA SF +Y  P     P+  EL+VSVEAL
Sbjct:    9 STWQVYLDQFEGPLDLLLHLVRDAQLDITEIALAAVAQQYFSYLETMHRLDVEIESSYLVVFAQLLELKSRLLLPEDPGGDEQLDLDFGEEE-SDAAPRESDP---LVDRLAAYALVKEAADWLASREATSFARYPRPSGLPFPDEPELEVSVEAL 160          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A7Z9PRB5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRB5_9BACT)

HSP 1 Score: 131 bits (329), Expect = 8.860e-35
Identity = 78/151 (51.66%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   22 YQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLP-PVEEEDG-YGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWLELDVSVEAL 468
            Y+V LP FEGPLDLLLSLV++ +L+ITEISLA V  QY++YL  L +L++E+ESSY+VVFAQLLE+KSRLLLP P  +ED  +G+E         E  E+DLV +LR Y+ +K+AA+W + +E  S  +Y HP    EPE   L +++ +L
Sbjct:   17 YKVQLPCFEGPLDLLLSLVEESELDITEISLAQVTGQYREYLELLGQLDVEIESSYLVVFAQLLELKSRLLLPEPEPDEDHLFGFE--------VEPDEDDLVTRLREYQKLKKAANWLAEREGQSLARYPHPSGLSEPETPILHLTLRSL 159          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A355TUS1_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TUS1_9BACT)

HSP 1 Score: 127 bits (319), Expect = 2.020e-33
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 VIKVVSHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEED-----LVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWL--ELDVSVEAL 468
            V+   S Y V + QFEGPLDLL  LV + KL+ITEISLA+VA QY +YL  +E  N+E+ESSY++VFAQLLE+KSRLLLPP E+E      D S   D   +  ++     L+ +L +Y +V++AADW   +E     +Y  PC Q + +    EL VS+EAL
Sbjct:    4 VLDTNSKYCVQIEQFEGPLDLLFHLVREAKLDITEISLAAVANQYFEYLEKIESFNIEIESSYLLVFAQLLELKSRLLLPPNEDEYSEPSWDSSDILDQNAEENDENGGASLIRRLSLYAMVRQAADWLYEREENCLTRYVRPCQQQKADTFPCELQVSLEAL 166          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A7Y4RCR6_9CHLR (Segregation/condensation protein A n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A7Y4RCR6_9CHLR)

HSP 1 Score: 102 bits (254), Expect = 8.820e-24
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   13 VSHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLP-PVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADW 369
            ++ Y+V+ P +EGPLDLLLSL+++ +LNIT ISLA+V  QY  YL  LER+  +  SS++V+ A+L++IKS  LLP PVE E G             EDP  DLVEQLR+YK  KE A W
Sbjct:    5 ITGYKVNTPVYEGPLDLLLSLIERSELNITAISLAAVTDQYLSYLHGLERMMPDEISSFLVIAAKLVQIKSEALLPRPVEREPGE------------EDPGVDLVEQLRLYKRYKEIAGW 112          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: UPI001CBB9939 (segregation/condensation protein A n=1 Tax=Neobacillus bataviensis TaxID=220685 RepID=UPI001CBB9939)

HSP 1 Score: 97.4 bits (241), Expect = 7.740e-22
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 1
Query:   22 YQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAA-DWFSMQEAYSFGQYHHPCSQLE-------PEWLELDVSV 459
            YQV +  FEGPLDLLL L+++ +++I +I +A + +QY  Y+ T+  L L++ S Y+V+ A LLEIKS++LLP  EEE     +++S      EDP ++LVE+L  Y+  KEAA D  SM+E      Y  P S L        PE  EL+VS+
Sbjct:    3 YQVKIDAFEGPLDLLLHLINRLEIDIYDIPVAQITEQYLLYIKTMNELKLDIASEYLVIAATLLEIKSKMLLPKHEEETNDDVDEFSYE----EDPRDELVERLIEYRKYKEAAHDLKSMEEERGL-MYTKPPSDLSDYVKDIRPEKTELNVSL 151          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A2V3WEX7_9BACI (Segregation and condensation protein A n=1 Tax=Streptohalobacillus salinus TaxID=621096 RepID=A0A2V3WEX7_9BACI)

HSP 1 Score: 97.1 bits (240), Expect = 8.760e-22
Identity = 58/150 (38.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   10 VVSHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWLELDVSV 459
            +V HYQV+L  FEGPLDLLL L+++ +++I ++ +A V +QY +++ T++ L L + S Y+V+ A LL+IKS +LLP  E +D Y YE+        EDP E L+E+L  Y+  KE A     +   S   Y  P     PE + ++ +V
Sbjct:    1 MVKHYQVNLDVFEGPLDLLLHLINRYEIDIYDLPVAQVTKQYMEFIHTMQELELNIASEYLVMAATLLQIKSTMLLPHPELDDDYTYEEEE------EDPREALIERLIEYRKYKEVASDLKERADDSKESYTRP-----PEKVSVEAAV 139          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: E6SKN8_THEM7 (Segregation and condensation protein A n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKN8_THEM7)

HSP 1 Score: 97.8 bits (242), Expect = 9.360e-22
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   22 YQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFS-MQEAYSFGQYHHPCSQLEP 432
            Y V L QFEGPLDLLL L++K++++I +I +A + +QY ++L  + RL+LEV S ++V+ AQL++IK+R+LLPP   ED        + A+   DP E+LV +L  Y+  KEAA + S + E Y  G+Y      + P
Sbjct:    3 YTVRLDQFEGPLDLLLQLIEKQEIDIHDIPIARITEQYLEHLEAMRRLDLEVTSEFVVLAAQLIDIKARMLLPPEPRED-------DATAEEEADPREELVRRLLEYRQYKEAARYLSELAEQYG-GRYPRLADAMAP 132          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: UPI000BB68761 (segregation/condensation protein A n=1 Tax=Bacillus TaxID=1386 RepID=UPI000BB68761)

HSP 1 Score: 97.1 bits (240), Expect = 1.130e-21
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   13 VSHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCS-------QLEPEWLELDVSV 459
            +  Y V +  FEGPLDLLL L+++ +++I  I +A + +QY  Y+ T++ L L+V S Y+V+ A LLEIKS++LLP  EEE    ++D     D  EDP E+L+ +L  Y+  KEAA+     E      +  P S       Q+EP+ ++LDVS+
Sbjct:    1 MQEYNVKIDAFEGPLDLLLHLINRLEIDIYNIPVAQITEQYLLYIHTMKELQLDVASEYLVMAATLLEIKSKMLLPKHEEE---LFDDQDEFGDYEEDPREELMNRLIEYRKYKEAAEDLKEMETERNEYFTKPPSDLSEFIKQVEPQEVKLDVSL 153          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A7C3L388_9BACT (Segregation/condensation protein A n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C3L388_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.440e-21
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 1
Query:   16 SHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHH---PCSQLEPEWLELDVSV 459
             +Y+V LP FEGPLDLLL L+ K ++NI +I +A + QQY +YL  ++ LNL +   ++V+ A L+ IKS++LLPP ++ED              EDP  DLV +L  Y+  KEAA+  + +E      +H    P  Q+E + +  +VS+
Sbjct:   15 DNYRVQLPVFEGPLDLLLHLIKKSEINIYDIPIAQITQQYLEYLDLMKSLNLNIAGEFLVMAATLIHIKSKMLLPPDDQEDEA----------QEEDPRADLVHRLLEYQRFKEAAEGLAHREEVWREVFHRQIDPADQVEQDVVLTEVSL 155          
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Match: A0A1H2RHL1_9BACI (Segregation and condensation protein A n=3 Tax=Marinococcus TaxID=1370 RepID=A0A1H2RHL1_9BACI)

HSP 1 Score: 96.3 bits (238), Expect = 1.760e-21
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   16 SHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLLTLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAYEDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWLELDVSVEAL 468
              Y+V + QFEGPLD+LL  V + +++I +I LA++  QY QY+ T++ L L+V   Y+V+ A LL+IKS+ LLP   +E+ +  E         EDP+E L+EQL  YK  KEAA     +E      Y  P S    EW   +   E+L
Sbjct:    3 EQYKVKIDQFEGPLDVLLHFVQQAEMDIQDIPLAAITDQYLQYVRTMQELELDVAGEYLVMAATLLQIKSQTLLPVTPDEEAWVEE---------EDPKEQLIEQLEEYKRYKEAAGKLQQKEQEQQQVYKKPLS----EWFTQEEKEESL 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15420.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XME5_9BURK4.890e-3756.41Segregation/condensation protein A n=1 Tax=Burkhol... [more]
A0A7Z9PRB5_9BACT8.860e-3551.66Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A355TUS1_9BACT2.020e-3347.24Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A7Y4RCR6_9CHLR8.820e-2450.83Segregation/condensation protein A n=1 Tax=Anaerol... [more]
UPI001CBB99397.740e-2242.21segregation/condensation protein A n=1 Tax=Neobaci... [more]
A0A2V3WEX7_9BACI8.760e-2238.67Segregation and condensation protein A n=1 Tax=Str... [more]
E6SKN8_THEM79.360e-2242.03Segregation and condensation protein A n=1 Tax=The... [more]
UPI000BB687611.130e-2139.10segregation/condensation protein A n=1 Tax=Bacillu... [more]
A0A7C3L388_9BACT1.440e-2138.41Segregation/condensation protein A n=1 Tax=Nitrosp... [more]
A0A1H2RHL1_9BACI1.760e-2139.07Segregation and condensation protein A n=3 Tax=Mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15420contigP-wetherbeei_contig15420:1145..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog644966.Tmar_1133
Preferred namescpA
PFAMsSMC_ScpA
Model size468
Max annot lvl186801|Clostridia
KEGG koko:K05896
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-22
EggNOG OGsCOG1354@1|root,COG1354@2|Bacteria,1TRW3@1239|Firmicutes,249VW@186801|Clostridia,3WCN2@538999|Clostridiales incertae sedis
DescriptionParticipates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Cds size468
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.5150118-CDS-P-wetherbeei_contig15420:1144..16121683186055.5150118-CDS-P-wetherbeei_contig15420:1144..1612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15420 1145..1612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15420.2.1prot_P-wetherbeei_contig15420.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15420 1145..1612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15420.2.1

>prot_P-wetherbeei_contig15420.2.1 ID=prot_P-wetherbeei_contig15420.2.1|Name=mRNA_P-wetherbeei_contig15420.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
VIKVVSHYQVDLPQFEGPLDLLLSLVDKEKLNITEISLASVAQQYQQYLL
TLERLNLEVESSYIVVFAQLLEIKSRLLLPPVEEEDGYGYEDYSSPADAY
EDPEEDLVEQLRMYKLVKEAADWFSMQEAYSFGQYHHPCSQLEPEWLELD
VSVEAL
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mRNA from alignment at P-wetherbeei_contig15420:1145..1612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15420.2.1 ID=mRNA_P-wetherbeei_contig15420.2.1|Name=mRNA_P-wetherbeei_contig15420.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15420:1145..1612+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCAAGGTCGTCAGCCATTACCAGGTGGACCTTCCGCAATTCGAGGG CCCTCTGGACTTGCTGCTATCTCTGGTCGACAAAGAAAAGCTCAACATCA CGGAGATCTCGCTAGCTAGCGTCGCACAGCAATATCAGCAGTATCTCCTG ACGCTCGAACGTCTCAACCTGGAGGTAGAGAGCTCCTATATCGTCGTCTT CGCTCAGCTCCTGGAAATCAAATCGCGCCTACTTCTGCCTCCCGTCGAAG AAGAGGATGGCTACGGCTACGAAGACTACAGCTCCCCGGCCGACGCCTAC GAGGACCCTGAAGAAGACCTCGTCGAGCAGCTTCGCATGTATAAATTGGT CAAAGAAGCCGCAGATTGGTTCTCGATGCAGGAAGCTTACAGCTTCGGGC AATATCATCATCCCTGCAGTCAACTCGAACCCGAGTGGCTGGAACTCGAT GTATCGGTGGAAGCCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15420:1145..1612+

>mRNA_P-wetherbeei_contig15420.2.1 ID=mRNA_P-wetherbeei_contig15420.2.1|Name=mRNA_P-wetherbeei_contig15420.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15420:1145..1612+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCAAGGTCGTCAGCCATTACCAGGTGGACCTTCCGCAATTCGAGGG
CCCTCTGGACTTGCTGCTATCTCTGGTCGACAAAGAAAAGCTCAACATCA
CGGAGATCTCGCTAGCTAGCGTCGCACAGCAATATCAGCAGTATCTCCTG
ACGCTCGAACGTCTCAACCTGGAGGTAGAGAGCTCCTATATCGTCGTCTT
CGCTCAGCTCCTGGAAATCAAATCGCGCCTACTTCTGCCTCCCGTCGAAG
AAGAGGATGGCTACGGCTACGAAGACTACAGCTCCCCGGCCGACGCCTAC
GAGGACCCTGAAGAAGACCTCGTCGAGCAGCTTCGCATGTATAAATTGGT
CAAAGAAGCCGCAGATTGGTTCTCGATGCAGGAAGCTTACAGCTTCGGGC
AATATCATCATCCCTGCAGTCAACTCGAACCCGAGTGGCTGGAACTCGAT
GTATCGGTGGAAGCCCTG
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