mRNA_P-wetherbeei_contig15401.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A1U7XLC9_NICSY (uncharacterized protein LOC104235647 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7XLC9_NICSY) HSP 1 Score: 145 bits (366), Expect = 1.020e-36 Identity = 85/198 (42.93%), Postives = 121/198 (61.11%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAPAGHRLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGP-LKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A +T+I+ALK +S F MKDLG K +LGMEI+ D V +SQK+YIE +L+ ++M C AP +L+++ P DE M +I Y AVG ++Y + TR D+++ V +SR+MSNP HW AV+W ++Y+ G L F G + ++GY DSD+AG + +RSTTGY F L
Sbjct: 349 LYVDDMLIAANNITEINALKKLLSKEFDMKDLGAAKKILGMEISREDDVVHLSQKRYIERVLERFNMQTCKPVSTPLAP-HFKLSESQMPQSEDEVEHMSKIPYASAVGSIMYAMVCTRPDIAQSVSVVSRYMSNPGKRHWEAVKWILRYLKGASGVGL---TFRKSGTGISILGYVDSDYAGDLDRRRSTTGYIFTL 542
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A1R3HSN7_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HSN7_COCAP) HSP 1 Score: 136 bits (342), Expect = 1.740e-33 Identity = 89/200 (44.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITFGDRSVS---ISQKKYIEDMLKVYDMHHCTHFQELPAPAGHRLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A L +I++LKA +S F MKDLG K +LGMEI + DR V +SQ+KYIE +L+ + M P A +L + P DE M I Y AVG L+Y + TR DL+ V +SR MSNP THW AV+W M+Y++GT+ L G +G LIGY DSD+AG +RS Y F L
Sbjct: 890 LYVDDMLIAAKDLAEINSLKALLSSEFEMKDLGAAKKILGMEI-WRDRKVGLLYVSQQKYIEKVLQSFQMDKAKPVST-PLAAHFKLDASALPSSNDEVNCMSIIPYSSAVGSLMYAMVCTRPDLAHAVSVISRFMSNPGKTHWEAVKWIMRYLNGTKNVCLVYGS---DGNSGLIGYVDSDYAGDFIKRRSLACYIFTL 1084
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A1D1ZEI2_9ARAE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZEI2_9ARAE) HSP 1 Score: 130 bits (328), Expect = 3.030e-33 Identity = 79/199 (39.70%), Postives = 112/199 (56.28%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEI--TFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAPAGHRLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A + +I+ LKA +S F MKDLG K +LGMEI G + ++Q +Y++ +L+ +DM P +L+ + SP DE + M + Y AVG L+Y + TR D+S+ V +SR+MSNP HW AV+W +Y+ GT L G L GY DSD+AG + +RS TGY F +
Sbjct: 26 LYVDDMLIAAADIYEINQLKALLSSEFEMKDLGAAKKILGMEIQRNRGAGKLFLTQARYVQKVLQRFDMWDAKPVST-PLAVHFKLSASLSPQSTDEEVYMSRVPYSSAVGSLMYAMVCTRPDISQAVSVVSRYMSNPGKVHWQAVKWIFRYLKGTVNTCLEFG----RNSDILSGYVDSDFAGDLDRRRSLTGYVFSV 219
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A251VE25_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VE25_HELAN) HSP 1 Score: 132 bits (333), Expect = 2.030e-32 Identity = 76/200 (38.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query: 1 IVCLYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAPAGHRLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
++CLYVDDL+I + ++ I K ++ F M D+G L Y LGME+T+ + ++++SQKKY+ ++L+ Y M HC P G +L+K D + E YR VG L+YLT TR D+ V ++SR+M NP +HW A + +KY+ GT+ + + G +L+G+SDSD+AG + +ST+GY F L
Sbjct: 464 VICLYVDDLIIASNSIKLITEFKESMKREFEMTDMGQLHYFLGMEVTYENGNITLSQKKYMRNLLEKYKMTHCNTVST-PMEYGLKLSKD------DPEEFVDEGMYRSLVGSLMYLTN-TRPDIMFAVSKISRYMENPKKSHWEAAKRILKYIKGTQELGV---TYSKGGKKRLMGFSDSDYAGNIDDSKSTSGYIFHL 652
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9J5P5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J5P5_FAGSY) HSP 1 Score: 132 bits (332), Expect = 3.800e-32 Identity = 79/201 (39.30%), Postives = 117/201 (58.21%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEI--TFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAP-AGH-RLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M + + P A H RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT ++ P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 869 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSM---LDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHEILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1064
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9IGN4_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IGN4_FAGSY) HSP 1 Score: 131 bits (330), Expect = 7.100e-32 Identity = 77/199 (38.69%), Postives = 112/199 (56.28%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITF--GDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAPAGHRLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M P RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT + P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 950 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSMLDAKPMST-PLVNHFRLSSSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEYGILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1145
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9ID98_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ID98_FAGSY) HSP 1 Score: 131 bits (329), Expect = 9.540e-32 Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITF--GDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAP-AGH-RLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M + + P A H RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT + P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 817 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSM---LDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1012
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9EK90_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EK90_FAGSY) HSP 1 Score: 131 bits (329), Expect = 9.620e-32 Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITF--GDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAP-AGH-RLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M + + P A H RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT + P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 899 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSM---LDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1094
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9FW82_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FW82_FAGSY) HSP 1 Score: 131 bits (329), Expect = 9.660e-32 Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEI--TFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAP-AGH-RLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M + + P A H RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT + P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 936 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSM---LDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1131
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Match: A0A2N9GGS7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGS7_FAGSY) HSP 1 Score: 131 bits (329), Expect = 9.660e-32 Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 10 LYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEI--TFGDRSVSISQKKYIEDMLKVYDMHHCTHFQELPAP-AGH-RLTKAPSPLPPDESLTMREIKYRHAVGHLLYLTMVTRFDLSKVVCELSRHMSNPSPTHWGAVRWCMKYVSGTEAKKLHLGPFPCEGPLKLIGYSDSDWAGYTNTQRSTTGYAFVL 600
LYVDD+LI A ++ +++ LK+ + F MKDLG K +LGMEI G R + +SQK YI +L+ + M + + P A H RL+ + P +E M ++ Y AVG L+Y + TR DL+ V +SR+M+NP HW AV+W +Y+ GT + P G ++GY D+D+AG + +RSTTGY F L
Sbjct: 936 LYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSM---LDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQP--GTNSVVGYVDADYAGEVDDRRSTTGYVFTL 1131 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15401.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15401.1.1 >prot_P-wetherbeei_contig15401.1.1 ID=prot_P-wetherbeei_contig15401.1.1|Name=mRNA_P-wetherbeei_contig15401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp IVCLYVDDLLIIAPALTDIDALKATISLAFPMKDLGVLKYLLGMEITFGDback to top mRNA from alignment at P-wetherbeei_contig15401:1014..1613+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15401.1.1 ID=mRNA_P-wetherbeei_contig15401.1.1|Name=mRNA_P-wetherbeei_contig15401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig15401:1014..1613+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15401:1014..1613+ >mRNA_P-wetherbeei_contig15401.1.1 ID=mRNA_P-wetherbeei_contig15401.1.1|Name=mRNA_P-wetherbeei_contig15401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig15401:1014..1613+ (Phaeothamnion wetherbeei SAG_119_79)back to top |