mRNA_P-wetherbeei_contig15285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15285.1.1
Unique NamemRNA_P-wetherbeei_contig15285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: D8LPR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR1_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.440e-51
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 1
Query:  118 RPAATSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            +PAAT  +++  ND  + +++  L P MVAAW  P++S+HV+TN+RL  L RL +SL  + +LGD V + FHVDVDAD  L DYL+   WP G K+IH R++RGGLI+AVTESFHP+TPH YA+ LE+D+EVSP +Y+W KH LLRYRY
Sbjct:  130 KPAAT--IKMGSNDPLYLSFLPALDPAMVAAWHQPKISIHVITNDRLSSLVRLVKSLQDSHFLGDEVELSFHVDVDADGELMDYLMGVDWPFGDKQIHHRIQRGGLISAVTESFHPSTPHDYAIFLEDDIEVSPAFYAWSKHLLLRYRY 276          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 5.860e-50
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 1
Query:  118 RPAATSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            +PAAT  +++  ND  + +++  L P MVAAW  P++S+HV+TN+RL  L RL +SL  + +LGD V + FHVDVDAD  L DYL+   WP G K+IH R++RGGLI+AVTESFHP+TPH YA+ LE+D+EVSP +Y+W KH LLRYRY
Sbjct:  683 KPAAT--IKMGSNDPLYLSFLPALDPAMVAAWHQPKISIHVITNDRLTSLMRLVKSLQDSHFLGDEVELSFHVDVDADGELMDYLMGVDWPFGDKQIHHRIQRGGLISAVTESFHPSTPHDYAIFLEDDIEVSPAFYAWSKHLLLRYRY 829          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A5P1EDG8_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EDG8_ASPOF)

HSP 1 Score: 143 bits (361), Expect = 2.340e-37
Identity = 64/143 (44.76%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  136 LLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            L+ +PRN +    WMA L P  +  W   ++S++++T NR   L+RL +SL  A YLGD V++ F++D   DD     + +F WPHGP  + RR+ +GGLI AV+ES++P++   + +LLE+D+EVSP YY W+K+ALL YRY
Sbjct:  134 LVPLPRNSIGKVLWMADLRPSALPNWNKMKISVNIITQNRATSLQRLLKSLQNAYYLGDEVSLSFNMDSGVDDVTLKTIDSFNWPHGPTTVRRRIVQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALLAYRY 276          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: J3LI56_ORYBR (Uncharacterized protein n=16 Tax=Oryzeae TaxID=147380 RepID=J3LI56_ORYBR)

HSP 1 Score: 145 bits (367), Expect = 4.810e-37
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  130 TSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            T+L+ +PRN +    WMA L P  +  W    +S++++T NR   LRRL  SL +A Y+GD V + F++D   D A  + + +F WPHG K + RR+ +GGLI AV+ES++PA+   Y +LLE+D+EVSP YY WVK+ALL YRY
Sbjct:  557 TALVLLPRNSISKVLWMATLRPTSLPNWNRMRISVNIITQNRAKSLRRLLASLRSAYYVGDEVPISFNMDSRVDAATLNVVNSFEWPHGGKTLRRRIIQGGLIRAVSESWYPASDDDYGLLLEDDIEVSPYYYLWVKYALLAYRY 701          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A0D9VME1_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VME1_9ORYZ)

HSP 1 Score: 144 bits (364), Expect = 1.210e-36
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  130 TSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            T+L+ +PRN +    WM  L P  +  W    +S++++T NR   LRRL  SL  A Y+GD V + F++D   D A  + + +F WPHGPK + RR+ +GGLI AV+ES++PA    Y +LLE+D+EVSP YY WVK+ALL YRY
Sbjct:  569 TALVLLPRNSISKVLWMPTLRPTALPNWNKMRISVNIITQNRAGSLRRLLSSLRNAYYVGDEVPISFNMDSRVDAATLNVVNSFNWPHGPKTLRRRIIQGGLIRAVSESWYPANDDDYGLLLEDDIEVSPYYYLWVKYALLAYRY 713          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A835QY34_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QY34_VANPL)

HSP 1 Score: 142 bits (357), Expect = 1.700e-36
Identity = 64/143 (44.76%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  136 LLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            L+ +PR  +    WMA + P  +  W    +S+++VT NR   L+RL RSL  A YLGD +++ F++D   DD     + +F WPHG K + RR+ +GGLI AV+ES++PA+  +Y +LLE+D+EVSP YY W+K+ALL Y+Y
Sbjct:  149 LILLPRASITKVLWMADIRPTALPNWNRMRISINIVTQNRATSLQRLLRSLQNAFYLGDEISISFNMDSKVDDNTLKVVGSFHWPHGSKHVRRRIIQGGLIRAVSESWYPASDDEYGLLLEDDIEVSPYYYLWIKYALLAYQY 291          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A2N9HWR8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HWR8_FAGSY)

HSP 1 Score: 144 bits (362), Expect = 2.270e-36
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 1
Query:  127 ATSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            AT+L+ +PR  +    WMA L P  +  W    +S++++T NR   L RL +SL  A YLGD + + F++D   D+A    + +F WPHGPK + RR+ +GGLI AV+ES++P++   Y +LLE+D+EVSP YY W+K+ALL Y Y
Sbjct:  558 ATTLVLLPRPSISKVLWMADLRPTALPYWNRMRISVNIITQNRAHSLTRLLKSLSNAYYLGDEIPISFNMDSKVDEATIKLVNSFEWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDYGLLLEDDIEVSPYYYLWIKYALLAYHY 703          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A1D6HNS3_MAIZE (Glycosyltransferase family protein 2 n=18 Tax=Panicoideae TaxID=147369 RepID=A0A1D6HNS3_MAIZE)

HSP 1 Score: 144 bits (362), Expect = 2.270e-36
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = 1
Query:  130 TSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            T+L+ VPR+ +    WMA L P  +  W    +S++++T NR   L RL  SL +A YLGD V + F++D   D A    + +F WPHGPK + RR+ +GGLI AV+ES++P++   Y +LLE+D+EVSP YY W+K+ALL YRY
Sbjct:  568 TALVLVPRSSVSKVLWMATLKPASLPNWNRMRISVNIITQNRAKSLLRLLTSLRSAYYLGDEVPISFNMDSRVDAATLKVVNSFDWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDYGLLLEDDIEVSPYYYLWIKYALLAYRY 712          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: D8SMW5_SELML (Uncharacterized protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SMW5_SELML)

HSP 1 Score: 143 bits (361), Expect = 3.100e-36
Identity = 65/144 (45.14%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  133 SLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            +L+++PR  ++HA WMA L P  +  W    + ++++T NR+  L RL +SL +A YLGD++ + F++D   D    + + AF WPHG K + RR+  GGLI AV+ES++PA  H+Y +LLE+D+EVSP YY W+K+ALL Y Y
Sbjct:  569 TLVELPRPSIQHALWMADLKPISLQQWNKMTIVVNIITQNRVGSLNRLLQSLASAHYLGDKIHMTFNMDSKVDAPTLELVHAFQWPHGRKIVRRRIIPGGLIRAVSESWYPAHDHEYGLLLEDDIEVSPFYYMWLKYALLTYVY 712          
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Match: A0A6A4LXY1_9ERIC (Uncharacterized protein (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4LXY1_9ERIC)

HSP 1 Score: 143 bits (361), Expect = 3.100e-36
Identity = 64/145 (44.14%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  130 TSLLQVPRNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAARYLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVTESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY 564
            T+L+ +PRN +  A WMA L P  +  W   ++S++++T NR+  L RL  SL  A YLGD V + F++D   D +   ++ +F W HGPK + RR+ +GGLI AV+ES++P++ + + +LLE+D+EVSP YY W+K+ALL Y Y
Sbjct:  572 TTLVLLPRNSVGKALWMADLRPTALPNWNKMQISINIITQNRVHSLTRLLNSLSNAYYLGDHVPITFNMDTKVDASTIKFINSFNWTHGPKTLRRRIIQGGLIRAVSESWYPSSDNDFGLLLEDDIEVSPFYYLWIKYALLAYHY 716          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPR1_ECTSI1.440e-5156.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPH5_9PHAE5.860e-5056.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5P1EDG8_ASPOF2.340e-3744.76Uncharacterized protein n=3 Tax=Asparagus officina... [more]
J3LI56_ORYBR4.810e-3746.90Uncharacterized protein n=16 Tax=Oryzeae TaxID=147... [more]
A0A0D9VME1_9ORYZ1.210e-3646.90Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A835QY34_VANPL1.700e-3644.76Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A2N9HWR8_FAGSY2.270e-3644.52Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1D6HNS3_MAIZE2.270e-3646.21Glycosyltransferase family protein 2 n=18 Tax=Pani... [more]
D8SMW5_SELML3.100e-3645.14Uncharacterized protein n=5 Tax=Selaginella moelle... [more]
A0A6A4LXY1_9ERIC3.100e-3644.14Uncharacterized protein (Fragment) n=2 Tax=Rhodode... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15285contigP-wetherbeei_contig15285:352..1468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPR1
Model size566
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.36e-52
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186051.0273101-CDS-P-wetherbeei_contig15285:351..4051683186051.0273101-CDS-P-wetherbeei_contig15285:351..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15285 352..405 -
1683186051.0416327-CDS-P-wetherbeei_contig15285:708..8131683186051.0416327-CDS-P-wetherbeei_contig15285:708..813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15285 709..813 -
1683186051.055541-CDS-P-wetherbeei_contig15285:1063..14681683186051.055541-CDS-P-wetherbeei_contig15285:1063..1468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15285 1064..1468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15285.1.1prot_P-wetherbeei_contig15285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15285 352..1468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15285.1.1

>prot_P-wetherbeei_contig15285.1.1 ID=prot_P-wetherbeei_contig15285.1.1|Name=mRNA_P-wetherbeei_contig15285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
SGGRGHGNGTGGARSHAASTYATSYSYGGHGGGAPGAPFRPAATSLLQVP
RNDLRHAAWMAGLTPDMVAAWQIPEVSLHVVTNNRLLGLRRLCRSLLAAR
YLGDRVAVHFHVDVDADDALTDYLLAFPWPHGPKEIHRRVRRGGLIAAVT
ESFHPATPHQYAVLLEEDVEVSPLYYSWVKHALLRYRY
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mRNA from alignment at P-wetherbeei_contig15285:352..1468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15285.1.1 ID=mRNA_P-wetherbeei_contig15285.1.1|Name=mRNA_P-wetherbeei_contig15285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1117bp|location=Sequence derived from alignment at P-wetherbeei_contig15285:352..1468- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCGGCCGTGGCCACGGGAACGGCACCGGCGGCGCCCGCAGCCACGC GGCGAGCACCTACGCCACTTCGTATTCTTACGGCGGTCACGGAGGCGGCG CGCCCGGGGCGCCGTTCCGCCCGGCGGCGACATCACTACTCCAGGTGCCA CGCAACGACTTGCGGCACGCCGCGTGGATGGCGGGGCTGACGCCAGACAT GGTGGCCGCCTGGCAAATCCCGGAAGTTTCTCTGCACGTTGTCACCAACA ATCGTCTGCTGGGGCTGCGGCGCCTCTGCAGGTCCCTGCTGGCGGCGCGA TACCTGGGGGACCGCGTGGCGGTACATTTTCACGTTGACGTGGACGCCGA CGACGCGCTGACGGATTATCTATTGGCGTTCCCGTGGCCGCACGGCCCCA AGGAGGTGCGGGATGCGCTTTTGATTCTGAGGGGAGAGAGATTTCTGGAT CTCTCAACAGGTTATCTGGACTTTGGAGGATGAAAGTTTTGAAAGTGAAA GGAAGGGAGACAACGCGGGAGGAAAGTCGTGCGTGCGATCGATGTTCTTG GTGCCTTGCTGTTGCCTCGCATGTTTTGGGGGGCTTTTCACACCCAACTG ACCTAAGCTGCCCATCACCAACCCCCCCTCTCCCGTTCTCTGCCTATGCT CTCAGATCCACCGGCGAGTGCGACGCGGCGGACTCATTGCCGCCGTGACG GAATCCTTCCACCCGGCGACGCCGCACCAGTACGCTGTCCTGCTGGAAGA AGATGTCGAGGTGGGCCGGAGCTTCCCCCCCCCTGAAAGCGACGCACGCG ACAGTTGGAACTGCTTTCCTCATGCGGGCTCTTCGCCGAGCTCATCGCTG GGAGCGACCAGATCGCAGCCGGCGACGACATGCATGTGCTTCATTGCTGC TTTTACCCGATCGGCGACACACCAGCTTAGGGACGAACCCGTACAAAAAC CCGCAGATCTGTCATCAGCCAAACCTTCACTATTGCACTGTCTTTATGCC CTCTGTCTTTCAACCAAACGGTCTCCCACTCTGTTTTGCTCCTCATTCGT CTTCTTTTGTCAGGTCTCGCCCTTGTACTACAGCTGGGTCAAGCACGCGC TCCTGCGGTACCGCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15285:352..1468-

>mRNA_P-wetherbeei_contig15285.1.1 ID=mRNA_P-wetherbeei_contig15285.1.1|Name=mRNA_P-wetherbeei_contig15285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig15285:352..1468- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCGGCCGTGGCCACGGGAACGGCACCGGCGGCGCCCGCAGCCACGC
GGCGAGCACCTACGCCACTTCGTATTCTTACGGCGGTCACGGAGGCGGCG
CGCCCGGGGCGCCGTTCCGCCCGGCGGCGACATCACTACTCCAGGTGCCA
CGCAACGACTTGCGGCACGCCGCGTGGATGGCGGGGCTGACGCCAGACAT
GGTGGCCGCCTGGCAAATCCCGGAAGTTTCTCTGCACGTTGTCACCAACA
ATCGTCTGCTGGGGCTGCGGCGCCTCTGCAGGTCCCTGCTGGCGGCGCGA
TACCTGGGGGACCGCGTGGCGGTACATTTTCACGTTGACGTGGACGCCGA
CGACGCGCTGACGGATTATCTATTGGCGTTCCCGTGGCCGCACGGCCCCA
AGGAGATCCACCGGCGAGTGCGACGCGGCGGACTCATTGCCGCCGTGACG
GAATCCTTCCACCCGGCGACGCCGCACCAGTACGCTGTCCTGCTGGAAGA
AGATGTCGAGGTCTCGCCCTTGTACTACAGCTGGGTCAAGCACGCGCTCC
TGCGGTACCGCTAC
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