mRNA_P-wetherbeei_contig15265.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15265.1.1
Unique NamemRNA_P-wetherbeei_contig15265.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15265.1.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.630e-49
Identity = 121/253 (47.83%), Postives = 143/253 (56.52%), Query Frame = 1 
Query:    1 DLALLCVFSFLWGRGTLFYVLGIDLLGAGLGICLVMSLLVVIGTVLPLVRDYAGQAGSAAALVTIGGLCLALVGFVFSGESSHKMAAAPVSSPLVTDPERGA--------SAAAAAKVEAPGVGSPPPTERPLLPRPLSKLDSFKRGAGAXXXXXXXXXXXXXXXRSPLVGVVVCVAAAIMASMLQFAFVFGKPLVNYAEDEEGVPKILAPLVVWLLAFSLAASWNVVYSAGRLTRNGAWAGFFAVGKRGFAR 735
            DL L+C FSFLWG GT  + LGI LLGAG G  LVMSLLVVIGT+LPL+ D+A  AGS AALVT+ GL  A+ GFV S  SS   A A  ++      E GA        ++ AAA V APG      T  P            K    A                S L  V VCVA A+M+SMLQF+FV+G PL+ +AE+EEGV    APLVVWLLAFSLAA WNV Y+   L++N  WA +  VG    AR
Sbjct:   85 DLGLVCTFSFLWGSGTACFSLGIQLLGAGPGTALVMSLLVVIGTLLPLIEDHADDAGSPAALVTLLGLLFAISGFVSSALSSGIKARAIEAAQSKAKAESGADEQADRVEASTAAAAVAAPGA-----TGTPHAKAVTGTTQPGKGTTPALTKEASDETQGAGEKTSHLTAVAVCVAGAVMSSMLQFSFVYGDPLITHAEEEEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVAR 332
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BLAST of mRNA_P-wetherbeei_contig15265.1.1 vs. uniprot
Match: D7FKI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.010e-36
Identity = 103/228 (45.18%), Postives = 126/228 (55.26%), Query Frame = 1 
Query:  106 MSLLVVIGTVLPLVRDYAGQAGSAAALVTIGGLCLALVGFVFSGESSHKMAAAPVSSPLVTDPERGA--------SAAAAAKVEAPGV----------GSPPPTERPLLPRPLSKLDSFKRGAGAXXXXXXXXXXXXXXXRSPLVGVVVCVAAAIMASMLQFAFVFGKPLVNYAEDEEGVPKILAPLVVWLLAFSLAASWNVVYSAGRLTRNGAWAGFFAVGKRGFAR 735
            MSLLVVIGT+LPL+ D+A  AGS AALVT+ GL  A+ GFV S  SS   A A  ++   T  E GA        ++ AAA V APG           G+  P E    P P  +     +GAG                 S L  V VCVA A+M+SMLQF+FV+G PL+ +AE+EEGV    APLVVWLLAFSLAA WNV Y+   L++N  WA +  VG    AR
Sbjct:    1 MSLLVVIGTLLPLIEDHADDAGSPAALVTLLGLLFAISGFVSSALSSGIKARAIEAAQSKTKAESGADEQADRVEASTAAAAVAAPGATGTSHAKAVTGTTQPGEG-TTPAPTKEASDNTKGAGENT--------------SHLTAVAVCVAGAVMSSMLQFSFVYGDPLITHAEEEEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVAR 213
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BLAST of mRNA_P-wetherbeei_contig15265.1.1 vs. uniprot
Match: A0A7S1UHT2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHT2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.470e-7
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  487 GVVVCVAAAIMASMLQFAFVFGKPLVNYAEDEEGVPKILAPLVVWLLAFSLAASWNVVYSAGRLTRNGAWAGFF 708
            GV+V + A I++++LQFAFVFG PL + AED  G   + APLV+W +AF ++ + N+  + G + R G +  F+
Sbjct:   26 GVLVALTAGIVSALLQFAFVFGLPLSDAAEDA-GYAPLAAPLVIWFIAFPVSGAPNLAVALGLIWRRGTFRRFW 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJ20_9PHAE2.630e-4947.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKI2_ECTSI1.010e-3645.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UHT2_9STRA1.470e-741.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15265contigP-wetherbeei_contig15265:20..1517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKI2
Model size738
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.65e-37
EggNOG OGsCOG0697@1|root,2SCAI@2759|Eukaryota
Ec32 ortholog descriptionL-rhamnose-proton symport, RhaT
Ec32 orthologEc-12_001970.1
Descriptionpyrimidine nucleotide-sugar transmembrane transport
Cds size738
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.4099288-CDS-P-wetherbeei_contig15265:19..1121683186050.4099288-CDS-P-wetherbeei_contig15265:19..112Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15265 20..112 +
1683186050.4211514-CDS-P-wetherbeei_contig15265:337..4921683186050.4211514-CDS-P-wetherbeei_contig15265:337..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15265 338..492 +
1683186050.4299242-CDS-P-wetherbeei_contig15265:1027..15171683186050.4299242-CDS-P-wetherbeei_contig15265:1027..1517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15265 1028..1517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15265.1.1prot_P-wetherbeei_contig15265.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15265 20..1517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15265.1.1

>prot_P-wetherbeei_contig15265.1.1 ID=prot_P-wetherbeei_contig15265.1.1|Name=mRNA_P-wetherbeei_contig15265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=246bp
DLALLCVFSFLWGRGTLFYVLGIDLLGAGLGICLVMSLLVVIGTVLPLVR
DYAGQAGSAAALVTIGGLCLALVGFVFSGESSHKMAAAPVSSPLVTDPER
GASAAAAAKVEAPGVGSPPPTERPLLPRPLSKLDSFKRGAGAAAAAMAGG
GGDAAAARSPLVGVVVCVAAAIMASMLQFAFVFGKPLVNYAEDEEGVPKI
LAPLVVWLLAFSLAASWNVVYSAGRLTRNGAWAGFFAVGKRGFAR*
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mRNA from alignment at P-wetherbeei_contig15265:20..1517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15265.1.1 ID=mRNA_P-wetherbeei_contig15265.1.1|Name=mRNA_P-wetherbeei_contig15265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1498bp|location=Sequence derived from alignment at P-wetherbeei_contig15265:20..1517+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTCGCGTTGCTCTGCGTCTTCTCGTTCCTTTGGGGAAGGGGGACCCT
TTTTTACGTCTTGGGGATCGACCTGCTCGGTGCAGGCTTGGGGGTGAGCG
AAGAATGGAAGGGGGAAGGCAGAGATTCAATCCAATGTGGATAGTCTGTT
TGAAGAGGTTCTCCAACCATTTCATCCTGTTCAGTCTCTGCACGAACATG
TACTCCAAATCCTTGCGGCCAACGCAGACGTCTTAATTCATAAAACTGTT
TCAACGTTCGTCCTTGATCAGCATCCTTCTCTCACAAGTCGTCCAATGCT
TGAAACCATTGTCGGCAGATCTGTCTAGTGATGAGTCTCCTGGTAGTCAT
CGGCACTGTCCTGCCGCTGGTGCGGGACTACGCCGGGCAGGCCGGTTCGG
CGGCGGCGCTGGTGACCATCGGGGGCCTCTGCCTCGCCCTCGTGGGCTTC
GTGTTCTCAGGCGAGTCCAGTCAGTCGCACAGGACTGGAGGGTGAGCTTG
CAAGAGCATCCGGGCCGTTTTATGTGGGCTGTGGACTGGGACGGACGGTG
GGAACGGTTTTCCTTCAACCTGTGTGCATCAATTTCAAAGCGTATTGTGG
CTCGGTTCAAGGTATGATGGGCAACATCGTCTCGGCATGCAGCACCCCGA
CCAAACTGTGTTAAGGAGGGGAGGTGTACAATGCTTTTGCAATGAGCCAT
CAGGGGCTATTTGTCGGCGGCCTCTCGCCAGCCTCTACGCGTTTACTCTC
GAGTGATGTCTGGTGCCTGTGAGCCCCTCGAACACAAAGGCGCTCCTCCA
AATATTTGCACTGCCTGCCTGCTCTGCGCCATGTCCTAGCAGCTTATTCA
TCGAAGCTGCGGGACGAGGGGCTGCAACGCGGTGCGACTTTGCAAAAGGG
CGGCCCCGACGAAACAACAGGAGCAGTGGAAAGCAGCGCCGCTAGCGACG
CCAGCGGCGACCTCGGCGACCGACAGACCACCGGAGGGAGCGCGGGCGCA
GAAAGAAGTAAAATGGCGGCGGCGCCGGTGTCTTCCCCGTTGGTGACGGA
TCCAGAGAGGGGGGCAAGCGCGGCCGCCGCCGCAAAGGTGGAGGCACCGG
GAGTCGGATCGCCGCCGCCAACCGAACGGCCCCTGCTGCCGCGCCCGCTG
AGTAAGCTCGACAGCTTCAAGCGCGGCGCGGGTGCCGCCGCGGCGGCCAT
GGCCGGTGGCGGCGGCGACGCCGCGGCGGCGCGCAGCCCGTTGGTCGGCG
TGGTGGTGTGCGTCGCCGCCGCCATCATGGCGTCGATGCTGCAGTTCGCG
TTCGTCTTCGGCAAGCCGCTGGTTAACTACGCTGAAGATGAAGAGGGCGT
CCCCAAGATCCTTGCGCCGCTGGTGGTGTGGCTGCTGGCATTCTCGCTGG
CGGCGTCGTGGAACGTGGTCTATTCGGCGGGACGGCTGACACGGAACGGC
GCATGGGCAGGGTTCTTCGCCGTCGGGAAGCGGGGCTTCGCCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15265:20..1517+

>mRNA_P-wetherbeei_contig15265.1.1 ID=mRNA_P-wetherbeei_contig15265.1.1|Name=mRNA_P-wetherbeei_contig15265.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig15265:20..1517+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTCGCGTTGCTCTGCGTCTTCTCGTTCCTTTGGGGAAGGGGGACCCT
TTTTTACGTCTTGGGGATCGACCTGCTCGGTGCAGGCTTGGGGATCTGTC
TAGTGATGAGTCTCCTGGTAGTCATCGGCACTGTCCTGCCGCTGGTGCGG
GACTACGCCGGGCAGGCCGGTTCGGCGGCGGCGCTGGTGACCATCGGGGG
CCTCTGCCTCGCCCTCGTGGGCTTCGTGTTCTCAGGCGAGTCCAGTCATA
AAATGGCGGCGGCGCCGGTGTCTTCCCCGTTGGTGACGGATCCAGAGAGG
GGGGCAAGCGCGGCCGCCGCCGCAAAGGTGGAGGCACCGGGAGTCGGATC
GCCGCCGCCAACCGAACGGCCCCTGCTGCCGCGCCCGCTGAGTAAGCTCG
ACAGCTTCAAGCGCGGCGCGGGTGCCGCCGCGGCGGCCATGGCCGGTGGC
GGCGGCGACGCCGCGGCGGCGCGCAGCCCGTTGGTCGGCGTGGTGGTGTG
CGTCGCCGCCGCCATCATGGCGTCGATGCTGCAGTTCGCGTTCGTCTTCG
GCAAGCCGCTGGTTAACTACGCTGAAGATGAAGAGGGCGTCCCCAAGATC
CTTGCGCCGCTGGTGGTGTGGCTGCTGGCATTCTCGCTGGCGGCGTCGTG
GAACGTGGTCTATTCGGCGGGACGGCTGACACGGAACGGCGCATGGGCAG
GGTTCTTCGCCGTCGGGAAGCGGGGCTTCGCCAGGTGA
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