mRNA_P-wetherbeei_contig15148.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15148.1.1
Unique NamemRNA_P-wetherbeei_contig15148.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: A0A7X8XMW5_9BURK (CBS domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMW5_9BURK)

HSP 1 Score: 146 bits (368), Expect = 7.630e-42
Identity = 69/149 (46.31%), Postives = 101/149 (67.79%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRVVTG 447
            +T REIM    L V L   + E+A  L    + G+IVVD  G  VG++ + DLL++VA PHLPPH+++LGSI YL  P  +E++M +I G VARD M+  +VS + DT +ED+A LM++ K+ RIP++ +G PVGIV+R D++R  + G
Sbjct:    1 MTVREIMSAPVLTVGLGATVSEIADKLQKNRVSGLIVVDEAGLMVGVVGEGDLLYQVARPHLPPHIEVLGSIFYLQTPGRIEKLMRRITGTVARDIMSTKVVSVTEDTLIEDVASLMIERKVRRIPVVSEGRPVGIVTRGDVVRSALAG 149          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: A0A1M5CQC0_9FIRM (CBS domain-containing protein n=1 Tax=Desulforamulus putei DSM 12395 TaxID=1121429 RepID=A0A1M5CQC0_9FIRM)

HSP 1 Score: 131 bits (329), Expect = 2.760e-36
Identity = 65/146 (44.52%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRV 438
            + A++IMK + + V+ DT I+E+AQ LTD  + GV VV+ EGK VGI+T+ DLLH+ A+P +P    ILG++IYL G    +E   K+A + A + MT  +++ S +T +  +A LM++H I RIP++E+G  +GIVSR+D+IR +
Sbjct:    1 MLAKDIMKTDVITVSEDTTIKEIAQILTDNKISGVPVVNQEGKLVGIVTEGDLLHKEANPRIPKFFGILGAMIYLGGIDQYKEDFKKLAASKASEIMTTEVITVSKNTEIGAIATLMVEHNIKRIPVIENGKIIGIVSRADIIRTI 146          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: K8DX27_9FIRM (Putative signal transduction protein with CBS domains n=1 Tax=Desulforamulus hydrothermalis Lam5 = DSM 18033 TaxID=1121428 RepID=K8DX27_9FIRM)

HSP 1 Score: 130 bits (327), Expect = 5.550e-36
Identity = 64/144 (44.44%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIR 432
            + A++IMK + + V  DT I+++AQ LTDK + GV VV+ EGK VGI+T+ DLLH+ A+P +P    ILG++IY  G     E   K+A   A + MT  +++ S +T +  +A LM++H I RIP++E+G  +GIVSRSD+I+
Sbjct:    1 MKAKDIMKTDVITVTADTNIKDIAQILTDKGISGVPVVNQEGKLVGIVTEGDLLHKEANPRIPKFFGILGAMIYFGGVDQYREDFKKLAALKASEIMTSEVITVSKETDIRTIATLMIEHNIKRIPVVENGKVLGIVSRSDIIK 144          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: A0A2C6MCT5_9FIRM (Membrane protein n=1 Tax=Desulforamulus profundi TaxID=1383067 RepID=A0A2C6MCT5_9FIRM)

HSP 1 Score: 128 bits (321), Expect = 4.500e-35
Identity = 63/147 (42.86%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRVV 441
            + A++IMK   + V+ DT I+E+A+ LTD  + GV V +GEGK VGI+T+ DLL + A+P +P +  ILG++IY  G    +E   K+A   A + MT ++++ S DT V  +A LM+ H I RIP++E+G  +GIVSR+D+++ +V
Sbjct:    1 MIAKDIMKTEVITVSEDTTIEEIARILTDHKISGVPVANGEGKLVGIVTEGDLLRKEANPRIPKYFGILGAMIYFEGVDQYKEDFIKLAALKASEIMTSNVITVSEDTEVRAIATLMVKHNIKRIPVVENGKVIGIVSRADIVKTLV 147          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: A0A358Q009_9FIRM (Uncharacterized protein n=1 Tax=Desulfosporosinus sp. TaxID=157907 RepID=A0A358Q009_9FIRM)

HSP 1 Score: 118 bits (295), Expect = 3.980e-31
Identity = 56/143 (39.16%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   13 EIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRVV 441
            ++M+ N + +  D  I+E+A+TL D  + GV V+D +G  VGI+T+ DLLH+   P +P  + ILG++IY +G +  E  + K+  + A + MT ++V  + + S+E+ A LM+  KI R+P+LEDG  +GIVSR D+I+ ++
Sbjct:    5 DVMQTNVITIRSDMEIKEIARTLYDNRISGVPVIDSDGNLVGIVTEGDLLHKETSPQIPGVIGILGALIYYNGVKQYESDLKKLIASQASEIMTANVVIINKEASIEEAASLMVSKKIKRLPVLEDGKIIGIVSRMDIIKTLI 147          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: A0A7C3XBK9_9ACTN (CBS domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C3XBK9_9ACTN)

HSP 1 Score: 118 bits (295), Expect = 5.290e-31
Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   13 EIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIR 432
            E+M+   + +  D  +QE+A+ L  K + GV VVD     VGI+T+ DL+ + A  H P ++  L SIIYL   +  EE + K  GA  RD MT  +++ SP T+V ++A LM DHKI R+P++EDG  VGIV+R D++R
Sbjct:   16 EVMQRRVVTIGPDATVQELAELLRKKKISGVPVVDDGEHVVGIVTEGDLVAQDADLHFPHYIQFLDSIIYLESVKKFEERVRKAVGAYVRDVMTKDVLTVSPQTTVREVATLMSDHKINRVPVVEDGKLVGIVTRDDVVR 155          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: UPI001965B50F (CBS domain-containing protein n=1 Tax=Desulfobulbus alkaliphilus TaxID=869814 RepID=UPI001965B50F)

HSP 1 Score: 116 bits (290), Expect = 2.400e-30
Identity = 58/146 (39.73%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRV 438
            L A++IM    + V+ D  ++E+A  L   ++ G  VV+ +G+A+G++T++DL+ +    HLP  V IL S I+L  P   E+ + KIAG    D  +  L+S  PDTS+EDLA LM + KI  +P++EDG  VG++ +SD+IR +
Sbjct:    2 LKAQDIMSREVITVSEDATVRELATLLITHNISGAPVVNADGRAIGVVTESDLIFQNKKIHLPTAVAILDSFIFLERPGKTEKELKKIAGGKVGDICSRDLISVGPDTSLEDLATLMAEKKIHTLPVMEDGKLVGVIGKSDIIRTI 147          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: UPI001BBD920C (CBS domain-containing protein n=1 Tax=Dethiobacter sp. TaxID=2093370 RepID=UPI001BBD920C)

HSP 1 Score: 115 bits (289), Expect = 3.120e-30
Identity = 61/146 (41.78%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    7 AREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILE-DGVPVGIVSRSDLIRRVV 441
            AR+IM  + L V  DT IQEVA  LT   + G+ VVD +G+ VGI+++ DL+++    H P  ++ILG +IYL  P+ V + + K+  A   + MT  + +   DT+V D+A LM+D ++ R+P+L+ DG  VGIVSR DLI+ ++
Sbjct:    3 ARDIMSRDVLTVTKDTTIQEVAAILTGHKISGLPVVDSDGRVVGIVSEGDLIYQDKKLHTPAFLEILGGVIYLEDPKRVGQELMKMTAAKVVEIMTAKVYTVREDTTVSDIATLMIDRQVNRVPVLDGDGRLVGIVSRQDLIKSLL 148          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: J7INP5_DESMD (CBS-domain-containing membrane protein n=3 Tax=Desulfosporosinus TaxID=79206 RepID=J7INP5_DESMD)

HSP 1 Score: 115 bits (289), Expect = 3.210e-30
Identity = 55/147 (37.41%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRVV 441
            +  +++M+ N + +  D  I+EVA+ L D  + G  VVD EGK VGI+++ DLLH+  +P +P  V ILG++IY  G +  +  + K+    A + MT  +V  + + S+E+ A LM+  KI R+P++EDG  VGI++R D+I+ ++
Sbjct:    1 MKVKDVMQTNVITIRTDMEIKEVAKILYDHQISGAPVVDSEGKLVGIVSEGDLLHKETNPQIPGVVGILGALIYYRGVRQYQSDLKKLIALQASEIMTSQVVKINKEASIEEAASLMVSKKIKRLPVIEDGKIVGIITRMDIIKTLI 147          
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Match: UPI000730D01F (CBS domain-containing protein n=1 Tax=Defluviitalea phaphyphila TaxID=1473580 RepID=UPI000730D01F)

HSP 1 Score: 115 bits (287), Expect = 6.250e-30
Identity = 54/148 (36.49%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 LTAREIMKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHRVAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASPDTSVEDLADLMLDHKIGRIPIL-EDGVPVGIVSRSDLIRRVV 441
            +TA++IM+ N L +  D  I+++A+ L +  + GV VVD + K +GI+T+ DLL +  +P  P +V+ LGSII+L G +  +E + K+A   A + MT  + +   DTS+E++A +M++ ++ R+P++ E+G  +GIVSR+D+++ ++
Sbjct:    1 MTAKDIMQRNVLYIKKDMLIKDIAKLLFENKISGVPVVDDDKKVIGIVTEKDLLTKDKNPRFPSYVEFLGSIIFLEGVKRYDEELRKLAATKAEEIMTKKVHTIKEDTSIEEIASIMVEERVNRVPVVDEEGRLIGIVSRADMLKTIL 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15148.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XMW5_9BURK7.630e-4246.31CBS domain-containing protein n=1 Tax=Burkholderia... [more]
A0A1M5CQC0_9FIRM2.760e-3644.52CBS domain-containing protein n=1 Tax=Desulforamul... [more]
K8DX27_9FIRM5.550e-3644.44Putative signal transduction protein with CBS doma... [more]
A0A2C6MCT5_9FIRM4.500e-3542.86Membrane protein n=1 Tax=Desulforamulus profundi T... [more]
A0A358Q009_9FIRM3.980e-3139.16Uncharacterized protein n=1 Tax=Desulfosporosinus ... [more]
A0A7C3XBK9_9ACTN5.290e-3142.86CBS domain-containing protein n=1 Tax=Actinomyceti... [more]
UPI001965B50F2.400e-3039.73CBS domain-containing protein n=1 Tax=Desulfobulbu... [more]
UPI001BBD920C3.120e-3041.78CBS domain-containing protein n=1 Tax=Dethiobacter... [more]
J7INP5_DESMD3.210e-3037.41CBS-domain-containing membrane protein n=3 Tax=Des... [more]
UPI000730D01F6.250e-3036.49CBS domain-containing protein n=1 Tax=Defluviitale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15148contigP-wetherbeei_contig15148:238..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121428.DESHY_110036___1
PFAMsCBS
Model size453
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.82e-35
EggNOG OGsCOG0517@1|root,COG0517@2|Bacteria,1VA1X@1239|Firmicutes,24MNT@186801|Clostridia,261ZT@186807|Peptococcaceae
DescriptionPFAM CBS domain
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.3450086-CDS-P-wetherbeei_contig15148:237..6721683186046.3450086-CDS-P-wetherbeei_contig15148:237..672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15148 238..672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.3542013-UTR-P-wetherbeei_contig15148:672..6901683186046.3542013-UTR-P-wetherbeei_contig15148:672..690Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15148 673..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15148.1.1prot_P-wetherbeei_contig15148.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15148 238..672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15148.1.1

>prot_P-wetherbeei_contig15148.1.1 ID=prot_P-wetherbeei_contig15148.1.1|Name=mRNA_P-wetherbeei_contig15148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MKENPLCVALDTPIQEVAQTLTDKDLGGVIVVDGEGKAVGILTQTDLLHR
VAHPHLPPHVDILGSIIYLSGPQHVEEIMGKIAGAVARDGMTHHLVSASP
DTSVEDLADLMLDHKIGRIPILEDGVPVGIVSRSDLIRRVVTGK*
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mRNA from alignment at P-wetherbeei_contig15148:238..690-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15148.1.1 ID=mRNA_P-wetherbeei_contig15148.1.1|Name=mRNA_P-wetherbeei_contig15148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig15148:238..690- (Phaeothamnion wetherbeei SAG_119_79)
TTGACGGCCCGAGAAATCATGAAAGAAAATCCCCTCTGTGTCGCTCTGGA TACGCCTATCCAAGAAGTGGCGCAAACCCTCACGGATAAGGATCTTGGCG GAGTCATTGTGGTCGACGGCGAGGGCAAGGCGGTCGGGATTCTCACTCAG ACCGACCTGTTACATCGCGTAGCCCATCCTCATCTCCCGCCCCACGTGGA TATCCTGGGTAGCATCATCTACCTGAGCGGACCTCAGCATGTTGAGGAGA TTATGGGCAAAATTGCGGGAGCCGTCGCGCGTGACGGAATGACCCACCAT CTGGTATCGGCAAGTCCGGACACAAGCGTGGAAGATCTAGCGGATTTGAT GCTCGATCATAAGATCGGGCGAATCCCCATCCTCGAAGACGGGGTCCCGG TAGGGATCGTGAGCCGCTCGGATTTGATACGCCGGGTCGTAACCGGAAAG TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15148:238..690-

>mRNA_P-wetherbeei_contig15148.1.1 ID=mRNA_P-wetherbeei_contig15148.1.1|Name=mRNA_P-wetherbeei_contig15148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig15148:238..690- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGAAAATCCCCTCTGTGTCGCTCTGGATACGCCTATCCAAGAAGT
GGCGCAAACCCTCACGGATAAGGATCTTGGCGGAGTCATTGTGGTCGACG
GCGAGGGCAAGGCGGTCGGGATTCTCACTCAGACCGACCTGTTACATCGC
GTAGCCCATCCTCATCTCCCGCCCCACGTGGATATCCTGGGTAGCATCAT
CTACCTGAGCGGACCTCAGCATGTTGAGGAGATTATGGGCAAAATTGCGG
GAGCCGTCGCGCGTGACGGAATGACCCACCATCTGGTATCGGCAAGTCCG
GACACAAGCGTGGAAGATCTAGCGGATTTGATGCTCGATCATAAGATCGG
GCGAATCCCCATCCTCGAAGACGGGGTCCCGGTAGGGATCGTGAGCCGCT
CGGATTTGATACGCCGGGTCGTAACCGGAAAGTAG
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