mRNA_P-wetherbeei_contig15131.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15131.1.1
Unique NamemRNA_P-wetherbeei_contig15131.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: D8LR14_ECTSI (Flagellar associated protein, transcriptional coactivator-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR14_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 5.560e-50
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   10 FNQDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNKK 426
             +QDW  V + K R   T G KN A A AAR+G + TERKF  G N S+H    N +KLD+ETEEF+H  VDR LAQAIQQ RL K MTQKQL T INEKPQVV EYESGKAIPNP +++KL+RALG+ LPRP KK KK
Sbjct:    1 MSQDWNTVMISKTRPTATRGQKNAATAAAARSGTLDTERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQLISKLERALGVRLPRPGKKGKK 139          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A835ZEI2_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.320e-49
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNKK 426
            QDW+ VTL K RAP T GAKN A+A A R G + TE+++ GG N S H    N +KLDE+T+  KH  VDRSLAQAIQQ RL K +TQKQL T INEKPQVV EYESGKA+PNP ++ K++RALG  LPRP + +KK
Sbjct:    4 QDWDTVTLAKNRAPTTKGAKNAAVATALRTGTLQTEKRWAGGENKSTHAPHMNLKKLDEDTDNLKHDRVDRSLAQAIQQARLGKKLTQKQLATMINEKPQVVGEYESGKALPNPQLIVKIERALGTRLPRPKRASKK 140          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A067CG61_SAPPC (HTH cro/C1-type domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CG61_SAPPC)

HSP 1 Score: 150 bits (379), Expect = 6.410e-44
Identity = 84/138 (60.87%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAG--AKNVALAQAARAGAVTTERKFTGGTNASAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            QDWE     K R+    G  +K  AL +A RAG V+TE K T G N SAH    N RKLDE+TE FKH TVDRSL+QA+ + RL KGMTQK L TAINEKPQV+ EYESG+AIPNPAI++K++RALG  LPR PKK +
Sbjct:    7 QDWEVQGWNKARSGGRIGNESKEAALNRARRAGNVSTEVKHTNGLNRSAHGAAGNMRKLDEDTENFKHDTVDRSLSQALSKARLDKGMTQKALATAINEKPQVIGEYESGRAIPNPAIISKIERALGCRLPRGPKKKR 144          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A6G0XQC0_9STRA (HTH cro/C1-type domain-containing protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XQC0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.170e-41
Identity = 79/138 (57.25%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAG--AKNVALAQAARAGAVTTERKFTGGTNASAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            QDW      K R+    G  +K  AL +A RAG V TE K  G  N SAH    N RKL+E+T+ FKH+TVDRSL+QA+Q+ R+ KGMTQK L TAINEKPQV+ EYESG+AIPN  I+ K++RALG  LPR PKK K
Sbjct:    8 QDWSVAGWNKSRSGGRIGNESKEAALNRARRAGNVVTEAKHNGVANKSAHQATGNMRKLEEDTDNFKHETVDRSLSQALQKARMDKGMTQKALATAINEKPQVIGEYESGRAIPNGQIIVKIERALGCRLPRAPKKKK 145          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A6A4YNT5_9STRA (HTH cro/C1-type domain-containing protein (Fragment) n=3 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YNT5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.170e-40
Identity = 80/138 (57.97%), Postives = 94/138 (68.12%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAG--AKNVALAQAARAGAVTTERKFTGGTNASAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            QDW      K ++    G  +K  AL +A RAG V TE K  G  N SAH   AN RKLDE+TE FKH TVDRSL+QA+ + R+ KGMTQK L TAINEKPQV+ EYESGKAIPN  I+ K++RALG  LPR PKK +
Sbjct:    4 QDWSVAGWNKAKSGGRIGNESKEAALNRARRAGNVVTEVKVNGLANKSAHVPTANMRKLDEDTENFKHDTVDRSLSQALMKARMDKGMTQKALATAINEKPQVIGEYESGKAIPNGQIIVKIERALGCRLPRGPKKKR 141          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: D0NS90_PHYIT (HTH cro/C1-type domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=D0NS90_PHYIT)

HSP 1 Score: 139 bits (350), Expect = 1.660e-39
Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQP-ANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            QDWE       RAP    AK  AL  A R G V TE K   GTN  AH     N RKL+E+T+ FKH  VDRSL+QA+ + R+AK M QKQLGT INEKPQV+AEYESG+AIPN  I++KL+RALG+ LPR P+K K
Sbjct:   11 QDWESAGWGS-RAPPRGAAKQAALNSARRTGNVVTETKHNAGTNKGAHSAANVNMRKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIAEYESGRAIPNGQIISKLNRALGVQLPRGPQKKK 146          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A3M6VA18_9STRA (HTH cro/C1-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA18_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.150e-39
Identity = 80/144 (55.56%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 MATFNQ--DWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQPA-NARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            M+ F+Q  DW+       RAP    AK   L  A R+G V TE K+  GTN  AH     NARKL+E+T+ FKH  VDRSL+QA+ + R+AK M QKQLGT INEKPQV+A+YESG+AIPN  I+ KL+RALG+ LPR PKK K
Sbjct:    1 MSNFSQGQDWDTAGW-SSRAPPRGAAKQQVLNNARRSGNVVTETKYGAGTNKGAHSGAIINARKLEEDTDNFKHDAVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIIAKLNRALGVQLPRGPKKKK 143          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: M4B8U2_HYAAE (HTH cro/C1-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8U2_HYAAE)

HSP 1 Score: 139 bits (349), Expect = 2.430e-39
Identity = 82/140 (58.57%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    7 TFNQDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQPA-NARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            T  QDWE        AP+ A AK  AL  A RAG V TE KF  GTN  AH     NARKL+E+TE FKH  VDRSL+QA+ + R+AK M QKQLGT INEKPQV+A+YESG+AIPN  I++KL+RALG+ LPR  K  K
Sbjct:    5 TQGQDWEPAGWGSRPAPRGA-AKQQALNSARRAGDVVTETKFGAGTNKGAHSGATINARKLEEDTEHFKHDVVDRSLSQALMKARMAKKMNQKQLGTLINEKPQVIADYESGRAIPNGQIISKLNRALGVQLPRGQKPKK 143          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A7S2UVN6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVN6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.590e-39
Identity = 75/117 (64.10%), Postives = 89/117 (76.07%), Query Frame = 1
Query:   58 QTAGAKNVALAQAARAGAVTTERKFTGGTNASAHHQPA-NARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPR 405
            Q+A  KN +L +A R+G V TERKF  G N S H     N RKLD+ETEEFKH  VDRSLA AIQQ RLAK MTQK L TAINEKPQ+V EYESG+AIPNP ++++++RALG+ LPR
Sbjct:    2 QSAQQKNQSLQRALRSGNVATERKFAAGENKSVHASTGKNMRKLDDETEEFKHDRVDRSLALAIQQARLAKKMTQKALATAINEKPQIVGEYESGRAIPNPQMISRMERALGVRLPR 118          
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Match: A0A2D4BI28_PYTIN (HTH cro/C1-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI28_PYTIN)

HSP 1 Score: 137 bits (346), Expect = 5.960e-39
Identity = 78/137 (56.93%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   16 QDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNASAHH-QPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAINEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNK 423
            QDW  V     + PQ   +K   L QA R G V TE+K+  GTN SAH     NARKL+E+T+ FKH  V RSL+QA+ + R+ K MTQKQL T INEKPQ+VAEYESGKAIPN  +++KL+RALG+ LPR PKK K
Sbjct:    7 QDWS-VAGWGSKGPQRGVSKEAVLNQARRQGNVITEQKYNAGTNKSAHSGATVNARKLEEDTDNFKHDAVXRSLSQALMKARMDKKMTQKQLATTINEKPQIVAEYESGKAIPNGQVISKLERALGVKLPRGPKKKK 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR14_ECTSI5.560e-5063.31Flagellar associated protein, transcriptional coac... [more]
A0A835ZEI2_9STRA7.320e-4961.31Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A067CG61_SAPPC6.410e-4460.87HTH cro/C1-type domain-containing protein n=3 Tax=... [more]
A0A6G0XQC0_9STRA7.170e-4157.25HTH cro/C1-type domain-containing protein n=8 Tax=... [more]
A0A6A4YNT5_9STRA5.170e-4057.97HTH cro/C1-type domain-containing protein (Fragmen... [more]
D0NS90_PHYIT1.660e-3957.66HTH cro/C1-type domain-containing protein n=22 Tax... [more]
A0A3M6VA18_9STRA2.150e-3955.56HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
M4B8U2_HYAAE2.430e-3958.57HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A7S2UVN6_9STRA2.590e-3964.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BI28_PYTIN5.960e-3956.93HTH cro/C1-type domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15131contigP-wetherbeei_contig15131:417..1104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR14
Preferred nameMBF1
PFAMsHTH_3,MBF1
Model size441
Max annot lvl2759|Eukaryota
KEGG koko:K03627,ko:K14775
Hectar predicted targeting categoryother localisation
GOsGO:0000160,GO:0001101,GO:0003158,GO:0003674,GO:0003676,GO:0003700,GO:0003712,GO:0003713,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009723,GO:0009725,GO:0009737,GO:0009755,GO:0009873,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019216,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030855,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0033993,GO:0035556,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0044093,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045446,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0071310,GO:0071369,GO:0071495,GO:0080090,GO:0097159,GO:0097305,GO:0140110,GO:1901363,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
Evalue9.12e-51
EggNOG OGsCOG1813@1|root,KOG3398@2759|Eukaryota
Ec32 ortholog descriptionflagellar associated protein, transcriptional coactivator-like protein
Ec32 orthologEc-07_002410.1
Descriptionsequence-specific DNA binding
Cds size441
COG categoryK
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.7947671-CDS-P-wetherbeei_contig15131:416..7101683186045.7947671-CDS-P-wetherbeei_contig15131:416..710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15131 417..710 +
1683186045.8101075-CDS-P-wetherbeei_contig15131:957..11041683186045.8101075-CDS-P-wetherbeei_contig15131:957..1104Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15131 958..1104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15131.1.1prot_P-wetherbeei_contig15131.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15131 417..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15131.1.1

>prot_P-wetherbeei_contig15131.1.1 ID=prot_P-wetherbeei_contig15131.1.1|Name=mRNA_P-wetherbeei_contig15131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MATFNQDWEEVTLRKGRAPQTAGAKNVALAQAARAGAVTTERKFTGGTNA
SAHHQPANARKLDEETEEFKHQTVDRSLAQAIQQGRLAKGMTQKQLGTAI
NEKPQVVAEYESGKAIPNPAILTKLDRALGIHLPRPPKKNKKRDDA*
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mRNA from alignment at P-wetherbeei_contig15131:417..1104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15131.1.1 ID=mRNA_P-wetherbeei_contig15131.1.1|Name=mRNA_P-wetherbeei_contig15131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=688bp|location=Sequence derived from alignment at P-wetherbeei_contig15131:417..1104+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACTTTCAATCAGGACTGGGAGGAGGTGACGCTACGTAAGGGCCG CGCCCCACAAACCGCAGGCGCCAAAAACGTCGCGTTGGCGCAGGCTGCAC GTGCCGGAGCGGTCACCACGGAGAGGAAATTCACTGGTGGCACAAACGCG AGCGCCCACCATCAGCCGGCTAACGCGCGGAAGCTCGACGAGGAGACGGA GGAGTTCAAGCATCAGACGGTGGATCGATCCCTAGCGCAAGCTATACAGC AAGGCCGGCTCGCGAAAGGAATGACGCAGAAGCAGCTCGGGACGGTGAGC ATATTTATTCCCTCTGCTTTTGGCAAAGGTAACAAAATAAAATCTCCCGT TTCTACGTAGAGGCAGTGTGGCGGAGAAGAGTTGTCTCATAAGATAACAA TTTGATTTCTTTTGTTTCTTGTACGTTTTTATGATAGTGTTTGTTTTAGT TCTTCATTGAAAATTTGCTATCACAGCAGACTTTTCTCTCCTGCAACGTC CCTCTTTTCTGCCCGTTTCTGATACAACGCGATCACGCCAGGCCATCAAT GAGAAGCCGCAAGTGGTGGCGGAGTACGAGTCGGGAAAGGCCATCCCCAA CCCGGCCATCCTCACCAAGCTGGACAGGGCTCTGGGCATTCACCTGCCGC GGCCGCCCAAGAAAAACAAGAAGCGCGATGACGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15131:417..1104+

>mRNA_P-wetherbeei_contig15131.1.1 ID=mRNA_P-wetherbeei_contig15131.1.1|Name=mRNA_P-wetherbeei_contig15131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15131:417..1104+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTACTTTCAATCAGGACTGGGAGGAGGTGACGCTACGTAAGGGCCG
CGCCCCACAAACCGCAGGCGCCAAAAACGTCGCGTTGGCGCAGGCTGCAC
GTGCCGGAGCGGTCACCACGGAGAGGAAATTCACTGGTGGCACAAACGCG
AGCGCCCACCATCAGCCGGCTAACGCGCGGAAGCTCGACGAGGAGACGGA
GGAGTTCAAGCATCAGACGGTGGATCGATCCCTAGCGCAAGCTATACAGC
AAGGCCGGCTCGCGAAAGGAATGACGCAGAAGCAGCTCGGGACGGCCATC
AATGAGAAGCCGCAAGTGGTGGCGGAGTACGAGTCGGGAAAGGCCATCCC
CAACCCGGCCATCCTCACCAAGCTGGACAGGGCTCTGGGCATTCACCTGC
CGCGGCCGCCCAAGAAAAACAAGAAGCGCGATGACGCGTGA
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