mRNA_P-wetherbeei_contig15105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15105.1.1
Unique NamemRNA_P-wetherbeei_contig15105.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15105contigP-wetherbeei_contig15105:17..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog42099.EPrPV00000021649
PFAMsBromodomain,FYRC,PHD
Model size727
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.18e-07
EggNOG OGsCOG2940@1|root,COG5076@1|root,KOG0825@1|root,KOG0825@2759|Eukaryota,KOG1245@2759|Eukaryota,KOG4443@2759|Eukaryota,1MG65@121069|Pythiales
DescriptionSource PGD
Cds size504
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.7923853-CDS-P-wetherbeei_contig15105:16..5201683186044.7923853-CDS-P-wetherbeei_contig15105:16..520Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15105 17..520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.8038723-UTR-P-wetherbeei_contig15105:520..7431683186044.8038723-UTR-P-wetherbeei_contig15105:520..743Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15105 521..743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15105.1.1prot_P-wetherbeei_contig15105.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15105 17..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15105.1.1

>prot_P-wetherbeei_contig15105.1.1 ID=prot_P-wetherbeei_contig15105.1.1|Name=mRNA_P-wetherbeei_contig15105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MRSDMILASCLLALLRRLPLPICLQPASLRDLALSTSSFRCPSLPPFDFR
AIFSLDSARPRPAAPDPISGFGFPPRTQALDDDEVYRKYLKEVGQSGRGT
GRVMYLARIARHLREGDYDGDDGEERLLADVDRIIANCHKWNGAREKISV
SARRLGVAFRRLVRQWAD
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mRNA from alignment at P-wetherbeei_contig15105:17..743-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15105.1.1 ID=mRNA_P-wetherbeei_contig15105.1.1|Name=mRNA_P-wetherbeei_contig15105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=727bp|location=Sequence derived from alignment at P-wetherbeei_contig15105:17..743- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTTCCGGACGCTCGATTTTGCCGAGCCGTTCCTCGGACCCATCAAGG
AGGTGAGATCAAGAGGGCCGGAAAAAAGGGACCAGCGGCTGCAGTGGCTG
CGTTGTTGAAATGCAGTGGACTGACAGGCTGGCTTGCACTCTGCGCTACC
AGTTGTCAGCTCGTGTTTGAATCAAGGACCTTTCCTGAAAGTGGTCCGAG
CGTTTCTCTCTGCTTCCTTTGTGATGAGAAGTGACATGATCCTGGCAAGC
TGTTTACTTGCATTGCTGAGGAGACTACCGCTGCCAATTTGCTTACAGCC
GGCATCGCTGCGTGACCTTGCCCTCTCCACATCCTCCTTCCGGTGCCCAT
CCCTCCCTCCTTTTGACTTCCGCGCCATCTTCTCTTTGGATTCCGCCCGT
CCCCGTCCGGCCGCCCCCGATCCGATTTCTGGTTTCGGTTTCCCACCGCG
CACACAGGCGCTCGATGACGACGAAGTGTACAGAAAGTACCTCAAAGAGG
TCGGCCAGAGCGGCCGCGGCACCGGCCGCGTCATGTACCTGGCCCGGATC
GCCCGCCACCTGCGCGAGGGCGACTATGACGGCGACGATGGTGAAGAGCG
CCTGCTGGCGGACGTCGATCGCATCATCGCCAACTGCCACAAGTGGAACG
GCGCCAGAGAGAAGATCTCCGTCTCGGCCCGCCGCCTCGGTGTCGCATTC
CGGCGGCTCGTCCGGCAGTGGGCGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15105:17..743-

>mRNA_P-wetherbeei_contig15105.1.1 ID=mRNA_P-wetherbeei_contig15105.1.1|Name=mRNA_P-wetherbeei_contig15105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig15105:17..743- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAGTGACATGATCCTGGCAAGCTGTTTACTTGCATTGCTGAGGAG
ACTACCGCTGCCAATTTGCTTACAGCCGGCATCGCTGCGTGACCTTGCCC
TCTCCACATCCTCCTTCCGGTGCCCATCCCTCCCTCCTTTTGACTTCCGC
GCCATCTTCTCTTTGGATTCCGCCCGTCCCCGTCCGGCCGCCCCCGATCC
GATTTCTGGTTTCGGTTTCCCACCGCGCACACAGGCGCTCGATGACGACG
AAGTGTACAGAAAGTACCTCAAAGAGGTCGGCCAGAGCGGCCGCGGCACC
GGCCGCGTCATGTACCTGGCCCGGATCGCCCGCCACCTGCGCGAGGGCGA
CTATGACGGCGACGATGGTGAAGAGCGCCTGCTGGCGGACGTCGATCGCA
TCATCGCCAACTGCCACAAGTGGAACGGCGCCAGAGAGAAGATCTCCGTC
TCGGCCCGCCGCCTCGGTGTCGCATTCCGGCGGCTCGTCCGGCAGTGGGC
GGAC
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