mRNA_P-wetherbeei_contig15090.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15090.2.1
Unique NamemRNA_P-wetherbeei_contig15090.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15090.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15090contigP-wetherbeei_contig15090:209..1647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1262
Hectar predicted targeting categoryother localisation
Exons2
Cds size1089
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.221795-CDS-P-wetherbeei_contig15090:208..11011683186044.221795-CDS-P-wetherbeei_contig15090:208..1101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15090 209..1101 +
1683186044.230041-CDS-P-wetherbeei_contig15090:1279..14751683186044.230041-CDS-P-wetherbeei_contig15090:1279..1475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15090 1280..1475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.2378304-UTR-P-wetherbeei_contig15090:1475..16471683186044.2378304-UTR-P-wetherbeei_contig15090:1475..1647Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15090 1476..1647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15090.2.1prot_P-wetherbeei_contig15090.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15090 209..1475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15090.2.1

>prot_P-wetherbeei_contig15090.2.1 ID=prot_P-wetherbeei_contig15090.2.1|Name=mRNA_P-wetherbeei_contig15090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp
AAAVERERAVAADSARADLERQRRDFVNASSSPALAVAVSAAAAAATADH
PAGVSEAALRQRRRTELERQLEADEARDCEAAAVAAAAAAKEALSASVTV
AREEGERRRRAAAEAAERERRLAEADLARGREEEERRAAAAAAEAEAAEE
GAAVAASTAAKAAEAEVEAEVTAAAEVAALAAAAAAEWEAAAEVKVAQQQ
AEEAERKRRADEEEAAEAARCVVDDELREYRDRVRERRLNASGGSIAGGI
GGGGSNASGAPPRVRRDSGQSASDVSLETAPTAGRETTAMAAAAATESAL
EMSEASIDGGGDGGASAVSQLPYSEGEEEEENSWTRPAVARDDDNEDQLE
VNSVSASNDDWF*
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mRNA from alignment at P-wetherbeei_contig15090:209..1647+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15090.2.1 ID=mRNA_P-wetherbeei_contig15090.2.1|Name=mRNA_P-wetherbeei_contig15090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1439bp|location=Sequence derived from alignment at P-wetherbeei_contig15090:209..1647+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCCGTGGAGCGGGAGCGCGCGGTGGCGGCCGACTCCGCCCGCGC
AGATCTGGAGAGGCAGCGGCGGGATTTCGTCAATGCGTCGTCCTCGCCGG
CGCTTGCTGTTGCTGTTTCTGCTGCTGCTGCTGCCGCTACTGCAGATCAT
CCTGCTGGCGTCAGCGAGGCGGCACTGCGGCAGCGGCGGCGAACGGAGCT
CGAAAGGCAGCTCGAGGCCGACGAAGCCAGGGATTGCGAGGCGGCGGCAG
TAGCAGCTGCGGCAGCGGCGAAGGAAGCTCTGTCAGCGTCGGTGACGGTG
GCACGGGAAGAGGGGGAGCGCCGGCGGCGCGCCGCCGCCGAAGCTGCAGA
AAGGGAGCGGCGGCTTGCGGAAGCCGACTTGGCTCGAGGACGCGAAGAAG
AGGAGAGGAGGGCTGCAGCGGCGGCCGCAGAAGCCGAAGCTGCCGAGGAA
GGGGCGGCAGTGGCTGCGTCGACGGCAGCAAAGGCTGCAGAGGCGGAAGT
GGAAGCCGAAGTTACGGCGGCAGCGGAAGTGGCAGCATTAGCGGCGGCAG
CGGCGGCCGAGTGGGAGGCGGCAGCCGAAGTCAAAGTGGCACAGCAGCAG
GCGGAAGAAGCGGAGCGCAAGCGGCGGGCGGACGAAGAAGAAGCGGCCGA
AGCTGCACGTTGCGTGGTCGACGATGAACTTCGAGAGTACCGCGACCGAG
TCCGTGAGCGCCGTCTTAACGCCTCGGGCGGCAGCATCGCTGGCGGCATC
GGCGGCGGCGGCAGCAATGCCTCCGGTGCACCGCCGCGCGTTCGGCGGGA
CAGCGGGCAGAGCGCCAGTGACGTGTCCCTCGAGACGGCACCAACCGCGG
GGCGGGAGACAACGGCGATGGCGGCAGCCGCAGCCACGGAGAGGTGGGTG
AATGATCCCTTCTCTTTGGTGTATATCTCTTGGTTGTGCTTTGAGATTCT
TCGCCAGACCATGTTGTCACGCCAGAAAGCACTGCTGCTTTCCTCGCCGC
TCCTCACCAAAGCTGAAACGCTTCCCTTCACGCTTTATTACCGCCCCATC
GTCCCGCTGCCACTCCCGCAGCGCTCTCGAGATGTCGGAGGCTTCCATTG
ACGGTGGCGGCGACGGCGGCGCCAGCGCGGTGTCACAGCTCCCCTACTCG
GAAGGGGAGGAAGAGGAGGAGAACTCCTGGACGCGCCCCGCGGTGGCGAG
GGACGATGACAATGAGGATCAGCTCGAGGTGAACAGCGTTTCGGCGAGCA
ACGACGACTGGTTCTGACGCGCATTTGGCGTATTCTTGGGAGCTTCTTGA
CGCACCTGCGGGCCTTTAATAATAATACGACACAGGAGCGGGCGGCACCG
CTGGCACCCGCAGCGATGAAGTGGCCACCGCGTTCGGCTTACAGCATTCC
TTCTTCCTCTCCATCGAATACCGGATAAAGGCACAAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15090:209..1647+

>mRNA_P-wetherbeei_contig15090.2.1 ID=mRNA_P-wetherbeei_contig15090.2.1|Name=mRNA_P-wetherbeei_contig15090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig15090:209..1647+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCCGTGGAGCGGGAGCGCGCGGTGGCGGCCGACTCCGCCCGCGC
AGATCTGGAGAGGCAGCGGCGGGATTTCGTCAATGCGTCGTCCTCGCCGG
CGCTTGCTGTTGCTGTTTCTGCTGCTGCTGCTGCCGCTACTGCAGATCAT
CCTGCTGGCGTCAGCGAGGCGGCACTGCGGCAGCGGCGGCGAACGGAGCT
CGAAAGGCAGCTCGAGGCCGACGAAGCCAGGGATTGCGAGGCGGCGGCAG
TAGCAGCTGCGGCAGCGGCGAAGGAAGCTCTGTCAGCGTCGGTGACGGTG
GCACGGGAAGAGGGGGAGCGCCGGCGGCGCGCCGCCGCCGAAGCTGCAGA
AAGGGAGCGGCGGCTTGCGGAAGCCGACTTGGCTCGAGGACGCGAAGAAG
AGGAGAGGAGGGCTGCAGCGGCGGCCGCAGAAGCCGAAGCTGCCGAGGAA
GGGGCGGCAGTGGCTGCGTCGACGGCAGCAAAGGCTGCAGAGGCGGAAGT
GGAAGCCGAAGTTACGGCGGCAGCGGAAGTGGCAGCATTAGCGGCGGCAG
CGGCGGCCGAGTGGGAGGCGGCAGCCGAAGTCAAAGTGGCACAGCAGCAG
GCGGAAGAAGCGGAGCGCAAGCGGCGGGCGGACGAAGAAGAAGCGGCCGA
AGCTGCACGTTGCGTGGTCGACGATGAACTTCGAGAGTACCGCGACCGAG
TCCGTGAGCGCCGTCTTAACGCCTCGGGCGGCAGCATCGCTGGCGGCATC
GGCGGCGGCGGCAGCAATGCCTCCGGTGCACCGCCGCGCGTTCGGCGGGA
CAGCGGGCAGAGCGCCAGTGACGTGTCCCTCGAGACGGCACCAACCGCGG
GGCGGGAGACAACGGCGATGGCGGCAGCCGCAGCCACGGAGAGCGCTCTC
GAGATGTCGGAGGCTTCCATTGACGGTGGCGGCGACGGCGGCGCCAGCGC
GGTGTCACAGCTCCCCTACTCGGAAGGGGAGGAAGAGGAGGAGAACTCCT
GGACGCGCCCCGCGGTGGCGAGGGACGATGACAATGAGGATCAGCTCGAG
GTGAACAGCGTTTCGGCGAGCAACGACGACTGGTTCTGA
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