mRNA_P-wetherbeei_contig15053.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15053.3.1
Unique NamemRNA_P-wetherbeei_contig15053.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: UPI000FD82857 (cupin domain-containing protein n=1 Tax=Sulfurivermis fontis TaxID=1972068 RepID=UPI000FD82857)

HSP 1 Score: 181 bits (459), Expect = 5.900e-57
Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            M + Y ++ PY T+DGSEIREL+HP+VHGNRNQS AEATV PG  TALHRHR TEE+YHI  G G+M LG + F +A GDT+CI PGTPH + NTG  PLRILC CAPAY+HDDTEL+
Sbjct:    1 MRSHYAAIAPYRTRDGSEIRELLHPAVHGNRNQSLAEATVQPGQATALHRHRQTEELYHISAGHGVMQLGGEEFPIAPGDTVCIPPGTPHAVRNTGDEPLRILCCCAPAYSHDDTELL 118
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: A0A1F6UMK6_9PROT (Cupin type-1 domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_19FT_COMBO_61_10 TaxID=1817761 RepID=A0A1F6UMK6_9PROT)

HSP 1 Score: 181 bits (459), Expect = 7.140e-57
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            M T Y ++ PY+T+DGSEIRELMHP+VHGN  QS AEA++ PG  T LHRH  +EEIY+++ G+G MTLG + F +AAGDTICI PGTPHC+ N G+TPLRILC+CAPAYAHDDTEL+
Sbjct:    1 MKTRYSAITPYLTRDGSEIRELMHPAVHGNTQQSLAEASIAPGGATQLHRHHRSEEIYYVVAGSGRMTLGHERFPIAAGDTICIPPGTPHCVENHGQTPLRILCSCAPAYAHDDTELL 118
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: UPI001913136E (cupin domain-containing protein n=1 Tax=Rhodocyclus purpureus TaxID=1067 RepID=UPI001913136E)

HSP 1 Score: 180 bits (456), Expect = 1.860e-56
Identity = 80/120 (66.67%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELIER 360
            MHT Y  +P Y+TKDGSEIRELMHP+VHGNR QS AEA+VLPGT+T LHRH  +EE+YH+  G+G+MTLG + FAVA GDT+ I  GTPHCI  TG   LRILC C+PAY+H DTEL+E+
Sbjct:    1 MHTRYSEIPAYLTKDGSEIRELMHPAVHGNRRQSLAEASVLPGTRTHLHRHLSSEELYHVTAGSGVMTLGDRRFAVAVGDTVLIEAGTPHCIEATGSEALRILCCCSPAYSHADTELLEK 120
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: UPI001BBAE412 (Cupin domain-containing protein n=2 Tax=Azonexaceae TaxID=2008795 RepID=UPI001BBAE412)

HSP 1 Score: 179 bits (453), Expect = 5.330e-56
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:   10 TYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            TY  V PY+TKDGSEIRELMHPSVHGNR QS AEAT+LPG +T LHRH +TEE+YHI  G G+MTLG + F V  GDT+CI PGTPHCI   G TPL++LC C+PAY H DTEL+
Sbjct:    5 TYAGVAPYITKDGSEIRELMHPSVHGNRAQSLAEATILPGCKTELHRHAITEELYHITAGTGLMTLGQEHFPVRPGDTVCIPPGTPHCIEANGETPLKLLCCCSPAYDHADTELL 119
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: A0A1F6TDM0_9PROT (Cupin_2 domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_65_31 TaxID=1817759 RepID=A0A1F6TDM0_9PROT)

HSP 1 Score: 178 bits (451), Expect = 9.770e-56
Identity = 83/118 (70.34%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            M T Y  V P+VTKDGSEIRELMHPSVHG RNQS AEA V PGT T LHRHR +EEIYH+  GAG+MTLG++ F V  GDTI + PGTPH I NTG  PLRILC+CAP Y+HDDTEL+
Sbjct:    1 MKTVYREVRPFVTKDGSEIRELMHPSVHGVRNQSLAEAMVAPGTTTRLHRHRRSEEIYHVTAGAGLMTLGSEEFPVTPGDTILVPPGTPHRIRNTGVEPLRILCSCAPPYSHDDTELL 118
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: UPI00036CCF9B (cupin domain-containing protein n=1 Tax=Thioalkalivibrio sp. ALJ16 TaxID=1158762 RepID=UPI00036CCF9B)

HSP 1 Score: 177 bits (450), Expect = 1.390e-55
Identity = 83/118 (70.34%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            MHT Y  +P Y TKDGSEIRELMHP  HGN  QS AEA V PG  T LHRH  TEE+YHI  GAG M LGAK+FAVAAGDT+CIAPGTPH I NTG  PL ILC+C+P Y+HDDTEL+
Sbjct:    1 MHTHYAEIPAYDTKDGSEIRELMHPDTHGNAAQSLAEAVVQPGATTLLHRHARTEELYHITRGAGEMRLGAKTFAVAAGDTVCIAPGTPHNIRNTGTGPLHILCSCSPPYSHDDTELL 118
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: UPI00048C2E5E (cupin domain-containing protein n=1 Tax=Desulfocurvus vexinensis TaxID=399548 RepID=UPI00048C2E5E)

HSP 1 Score: 177 bits (448), Expect = 2.980e-55
Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELI 354
            M T+Y  VPPYVTKDGS IRELMHP+VHGN  QS AEATV P + TALHRH  TEE+YH++ G G MTLG ++FAV  GDT+CI PGT H I NTG  PLR+LC C PAYAHDDTEL+
Sbjct:    1 MKTSYALVPPYVTKDGSVIRELMHPAVHGNAAQSLAEATVEPASATALHRHPATEELYHVLEGTGAMTLGGETFAVGPGDTVCIPPGTAHRIANTGPGPLRVLCCCVPAYAHDDTELL 118
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: A0A6N1DR32_9GAMM (Cupin domain-containing protein n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DR32_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 4.370e-55
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELIE 357
            M T Y  +PPY TKDGSEIRELMHP  HGNR QS AEATV PG +T LHRH L+EEIYH+  G G MTLG + F + AGDT+CI PGT H + NTG  PLR+LCAC+PAYAH DTEL+E
Sbjct:    1 MRTRYTDIPPYRTKDGSEIRELMHPDQHGNRAQSLAEATVSPGGRTLLHRHHLSEEIYHVAAGRGRMTLGDQRFDIEAGDTVCIPPGTAHALHNTGSEPLRVLCACSPAYAHGDTELLE 119
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: A0A497XFE0_9PROT (Mannose-6-phosphate isomerase-like protein (Cupin superfamily) n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XFE0_9PROT)

HSP 1 Score: 176 bits (445), Expect = 9.700e-55
Identity = 81/119 (68.07%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELIE 357
            M T Y  +P YVT+DGSEIRELMHPS+HG R QS AEATV  GT+T LHRH +TEEIYH+  G+G MTLGA +F VAAGD++ IAPGT HCI   G  PLRILC C+PAYAH+DTEL+E
Sbjct:    1 MKTRYADIPAYVTRDGSEIRELMHPSLHGGRRQSLAEATVPAGTRTLLHRHGMTEEIYHVTAGSGRMTLGADTFDVAAGDSVLIAPGTAHCIEAIGAVPLRILCCCSPAYAHEDTELLE 119
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BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Match: A0A0E3L1N7_METTE (Mannose-6-phosphate isomerase n=3 Tax=Methanosarcina thermophila TaxID=2210 RepID=A0A0E3L1N7_METTE)

HSP 1 Score: 175 bits (443), Expect = 1.780e-54
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    7 TTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHRHRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPLRILCACAPAYAHDDTELIE 357
            T Y+ + PY+TKDGS IRELMHPS+HGN +QS AEATV  G +T LH+HRLTEEIYH+  G+GIMTLG++ F V  GD+ICI+PGTPH I NTG T L+ILC CAPAY+H+DTEL+E
Sbjct:    5 TVYEEIQPYITKDGSIIRELMHPSIHGNCSQSLAEATVPVGGKTLLHKHRLTEEIYHVTEGSGIMTLGSEEFEVKKGDSICISPGTPHRIQNTGDTALKILCCCAPAYSHEDTELLE 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15053.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000FD828575.900e-5767.80cupin domain-containing protein n=1 Tax=Sulfuriver... [more]
A0A1F6UMK6_9PROT7.140e-5766.95Cupin type-1 domain-containing protein n=1 Tax=Can... [more]
UPI001913136E1.860e-5666.67cupin domain-containing protein n=1 Tax=Rhodocyclu... [more]
UPI001BBAE4125.330e-5668.70Cupin domain-containing protein n=2 Tax=Azonexacea... [more]
A0A1F6TDM0_9PROT9.770e-5670.34Cupin_2 domain-containing protein n=1 Tax=Candidat... [more]
UPI00036CCF9B1.390e-5570.34cupin domain-containing protein n=1 Tax=Thioalkali... [more]
UPI00048C2E5E2.980e-5568.64cupin domain-containing protein n=1 Tax=Desulfocur... [more]
A0A6N1DR32_9GAMM4.370e-5567.23Cupin domain-containing protein n=1 Tax=Ectothiorh... [more]
A0A497XFE0_9PROT9.700e-5568.07Mannose-6-phosphate isomerase-like protein (Cupin ... [more]
A0A0E3L1N7_METTE1.780e-5467.52Mannose-6-phosphate isomerase n=3 Tax=Methanosarci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15053contigP-wetherbeei_contig15053:1001..1363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1158762.KB898037_gene2205
PFAMsCupin_2
Model size363
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-56
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1N1XN@1224|Proteobacteria,1SJ46@1236|Gammaproteobacteria
DescriptionMannose-6-phosphate isomerase
Cds size363
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.1271973-CDS-P-wetherbeei_contig15053:1000..13631683186043.1271973-CDS-P-wetherbeei_contig15053:1000..1363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15053 1001..1363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15053.3.1prot_P-wetherbeei_contig15053.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15053 1001..1363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15053.3.1

>prot_P-wetherbeei_contig15053.3.1 ID=prot_P-wetherbeei_contig15053.3.1|Name=mRNA_P-wetherbeei_contig15053.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MHTTYDSVPPYVTKDGSEIRELMHPSVHGNRNQSFAEATVLPGTQTALHR
HRLTEEIYHIMVGAGIMTLGAKSFAVAAGDTICIAPGTPHCIGNTGRTPL
RILCACAPAYAHDDTELIER*
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mRNA from alignment at P-wetherbeei_contig15053:1001..1363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15053.3.1 ID=mRNA_P-wetherbeei_contig15053.3.1|Name=mRNA_P-wetherbeei_contig15053.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig15053:1001..1363- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATACGACCTACGATTCGGTTCCGCCATACGTTACCAAGGACGGCTC
GGAAATTCGCGAGCTCATGCATCCGTCCGTCCACGGCAATCGTAACCAGA
GTTTCGCCGAGGCGACCGTGCTGCCCGGCACGCAAACTGCTCTGCACCGG
CATCGGCTTACCGAAGAGATTTACCACATCATGGTCGGGGCGGGGATTAT
GACGCTCGGCGCCAAGAGCTTTGCGGTGGCGGCAGGCGATACGATATGCA
TTGCGCCTGGCACGCCGCACTGCATCGGGAATACCGGCAGAACGCCGTTG
AGAATTCTTTGCGCGTGCGCGCCGGCTTATGCGCACGACGACACGGAACT
GATCGAACGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15053:1001..1363-

>mRNA_P-wetherbeei_contig15053.3.1 ID=mRNA_P-wetherbeei_contig15053.3.1|Name=mRNA_P-wetherbeei_contig15053.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig15053:1001..1363- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATACGACCTACGATTCGGTTCCGCCATACGTTACCAAGGACGGCTC
GGAAATTCGCGAGCTCATGCATCCGTCCGTCCACGGCAATCGTAACCAGA
GTTTCGCCGAGGCGACCGTGCTGCCCGGCACGCAAACTGCTCTGCACCGG
CATCGGCTTACCGAAGAGATTTACCACATCATGGTCGGGGCGGGGATTAT
GACGCTCGGCGCCAAGAGCTTTGCGGTGGCGGCAGGCGATACGATATGCA
TTGCGCCTGGCACGCCGCACTGCATCGGGAATACCGGCAGAACGCCGTTG
AGAATTCTTTGCGCGTGCGCGCCGGCTTATGCGCACGACGACACGGAACT
GATCGAACGTTAA
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