mRNA_P-wetherbeei_contig15015.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15015.1.1
Unique NamemRNA_P-wetherbeei_contig15015.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15015.1.1 vs. uniprot
Match: A0A835ZQ73_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ73_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.190e-24
Identity = 71/144 (49.31%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:   19 VVAWLVENGADVNAGDATGQTALQAALTLGEEETAAALVRKGGETTASAAESPLSGHTDGKGLPDAPRRSSKA-----KHRRLPSDRNPLLPPPERHFGFTYASLLLEKISMASTDGVTTPFVTVSVYNAKGQLSEPPQDVCIP 435
            V AWLVENGAD NA D  G TAL  A        AA L  KGG+ +       L+   DGK + D  +   +      KH   P++R PLL PPE+ FGFTY SLLLE+ +MASTD + +PF++VSVYN KGQLSE  QDV  P
Sbjct: 1556 VAAWLVENGADPNAQDRRGATALHDAAEHCNAAAAAVLAWKGGDLS-------LARPADGKSVVDIVKGERELALLMQKHFH-PTERAPLLAPPEKLFGFTYLSLLLERTTMASTDALVSPFLSVSVYNGKGQLSEAQQDVVFP 1691
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BLAST of mRNA_P-wetherbeei_contig15015.1.1 vs. uniprot
Match: D7G6I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.060e-10
Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 1 
Query:    4 VGVQQVVAWLVENGADVNAGDATGQTALQAALTLGEEETAAALVRKGGETTASAAESPLSGHT-------DGKGLPDAPRRSSKAKHRRLPSDRNPLLPPPERHFGFTYASLLLEKISMASTD-----GVTTPFVTVSVYNA 393
            V +Q++ AWL+E+GAD N  D +GQTAL  A+        + L RKGG+      + P  G +        G+G+    + SS        +  NPLLPPPE+ FGFTY S  +EK +  ++       +TTP   V  ++A
Sbjct: 1554 VSMQRLAAWLIESGADPNEPDNSGQTALHVAMECDNPAVVSTLARKGGDVNL---KRPCDGRSVITQVLEQGQGMDLIEQVSSAGV-----TTNNPLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGAFSA 1687
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BLAST of mRNA_P-wetherbeei_contig15015.1.1 vs. uniprot
Match: D7G6I1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.740e-5
Identity = 49/160 (30.63%), Postives = 71/160 (44.38%), Query Frame = 1 
Query:    4 VGVQQVVAWLVENGADVNAGDATGQTALQAALTLGEEETAAALVRKGGETTASAAESPLSGHTDGKGLPDAPRRSSKAKHR----RLPSDRNPLL----------------PPPERHFGFTYASLLLEKISMASTDGVTTPFVTVSVYNAKGQLSEPPQD 423
            + VQ+V  WL+ENGA+ NA D  G+T +   +     + A AL +  G          L   TD K   D    + +   R     L +   P L                P P +  GFTY S+ LE + +AS   +  P +TVSV++AKG+L E  Q+
Sbjct: 1663 IAVQRVATWLLENGANPNACDEQGETPMHCVMRANNVDAALALQKGYGSVN-------LPRKTDWKTPLDLASDNDEVWQRLRDGALVAAIAPKLTVGDSAADAGGTSWVHPAPAKLLGFTYISVFLETLVVASAADIGKPTLTVSVFSAKGKLVESAQE 1815
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZQ73_9STRA3.190e-2449.31P-loop containing nucleoside triphosphate hydrolas... [more]
D7G6I0_ECTSI3.060e-1034.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6I1_ECTSI3.740e-530.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15015contigP-wetherbeei_contig15015:1212..1649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6I0
PFAMsAida_C2,Ank_2,Ank_4,IQ,Myosin_head,PH
Model size440
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.02e-11
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size438
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.4373894-CDS-P-wetherbeei_contig15015:1211..16491683186041.4373894-CDS-P-wetherbeei_contig15015:1211..1649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15015 1212..1649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15015.1.1prot_P-wetherbeei_contig15015.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15015 1212..1649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15015.1.1

>prot_P-wetherbeei_contig15015.1.1 ID=prot_P-wetherbeei_contig15015.1.1|Name=mRNA_P-wetherbeei_contig15015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
TVGVQQVVAWLVENGADVNAGDATGQTALQAALTLGEEETAAALVRKGGE
TTASAAESPLSGHTDGKGLPDAPRRSSKAKHRRLPSDRNPLLPPPERHFG
FTYASLLLEKISMASTDGVTTPFVTVSVYNAKGQLSEPPQDVCIPA
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mRNA from alignment at P-wetherbeei_contig15015:1212..1649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15015.1.1 ID=mRNA_P-wetherbeei_contig15015.1.1|Name=mRNA_P-wetherbeei_contig15015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig15015:1212..1649- (Phaeothamnion wetherbeei SAG_119_79)
ACGGTCGGCGTGCAGCAAGTGGTGGCGTGGCTCGTGGAAAATGGCGCCGA
TGTCAATGCCGGCGACGCGACGGGCCAGACGGCCCTCCAAGCGGCTCTGA
CATTGGGCGAGGAGGAGACCGCAGCGGCGCTGGTGCGGAAGGGCGGCGAG
ACAACGGCGTCGGCGGCGGAATCGCCGCTCTCGGGGCACACGGACGGCAA
GGGGCTGCCGGACGCGCCGCGGCGCAGCAGCAAGGCGAAGCACCGGCGGC
TGCCCAGCGACCGCAACCCGCTGCTGCCGCCGCCGGAGCGGCACTTCGGC
TTCACGTACGCCTCACTGCTGCTGGAGAAGATCAGCATGGCCTCGACGGA
CGGCGTCACGACGCCCTTCGTCACCGTGTCGGTTTACAACGCCAAGGGCC
AGCTGTCTGAGCCGCCACAGGATGTATGCATCCCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15015:1212..1649-

>mRNA_P-wetherbeei_contig15015.1.1 ID=mRNA_P-wetherbeei_contig15015.1.1|Name=mRNA_P-wetherbeei_contig15015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig15015:1212..1649- (Phaeothamnion wetherbeei SAG_119_79)
ACGGTCGGCGTGCAGCAAGTGGTGGCGTGGCTCGTGGAAAATGGCGCCGA
TGTCAATGCCGGCGACGCGACGGGCCAGACGGCCCTCCAAGCGGCTCTGA
CATTGGGCGAGGAGGAGACCGCAGCGGCGCTGGTGCGGAAGGGCGGCGAG
ACAACGGCGTCGGCGGCGGAATCGCCGCTCTCGGGGCACACGGACGGCAA
GGGGCTGCCGGACGCGCCGCGGCGCAGCAGCAAGGCGAAGCACCGGCGGC
TGCCCAGCGACCGCAACCCGCTGCTGCCGCCGCCGGAGCGGCACTTCGGC
TTCACGTACGCCTCACTGCTGCTGGAGAAGATCAGCATGGCCTCGACGGA
CGGCGTCACGACGCCCTTCGTCACCGTGTCGGTTTACAACGCCAAGGGCC
AGCTGTCTGAGCCGCCACAGGATGTATGCATCCCGGCC
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