mRNA_P-wetherbeei_contig15.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15.8.1
Unique NamemRNA_P-wetherbeei_contig15.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15contigP-wetherbeei_contig15:19478..20420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog38654.XP_006031950.1
Preferred nameRANBP2
PFAMsIR1-M,Pro_isomerase,Ran_BP1,zf-RanBP
Model size646
Max annot lvl33208|Metazoa
KEGG koko:K12172
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006109,GO:0006111,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006508,GO:0006511,GO:0006606,GO:0006607,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010562,GO:0010564,GO:0010638,GO:0010675,GO:0010676,GO:0010906,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016234,GO:0016740,GO:0016925,GO:0017016,GO:0017038,GO:0018193,GO:0018205,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019899,GO:0019941,GO:0022402,GO:0030163,GO:0031090,GO:0031267,GO:0031323,GO:0031325,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0032446,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033131,GO:0033133,GO:0033365,GO:0033674,GO:0034504,GO:0034613,GO:0036211,GO:0042175,GO:0042325,GO:0042327,GO:0042405,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043412,GO:0043549,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044615,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0045787,GO:0045840,GO:0045913,GO:0045931,GO:0045937,GO:0046602,GO:0046604,GO:0046605,GO:0046607,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051028,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051170,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051338,GO:0051347,GO:0051493,GO:0051495,GO:0051603,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0051785,GO:0061842,GO:0062012,GO:0065007,GO:0065009,GO:0070507,GO:0070647,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098589,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1903047,GO:1903299,GO:1903301
Exons2
Evalue0.000979
EggNOG OGsCOG0652@1|root,COG5171@1|root,KOG0864@2759|Eukaryota,KOG0865@2759|Eukaryota,38EUB@33154|Opisthokonta,3BD77@33208|Metazoa,3CUQV@33213|Bilateria,47Z23@7711|Chordata,48YDA@7742|Vertebrata
Descriptionpositive regulation of mitotic centrosome separation
Cds size420
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03110,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.8908353-UTR-P-wetherbeei_contig15:19477..195971683186039.8908353-UTR-P-wetherbeei_contig15:19477..19597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15 19478..19597 +
1683186039.923614-UTR-P-wetherbeei_contig15:20314..204201683186039.923614-UTR-P-wetherbeei_contig15:20314..20420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15 20315..20420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.9029932-CDS-P-wetherbeei_contig15:19597..198401683186039.9029932-CDS-P-wetherbeei_contig15:19597..19840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15 19598..19840 +
1683186039.913181-CDS-P-wetherbeei_contig15:20137..203141683186039.913181-CDS-P-wetherbeei_contig15:20137..20314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15 20138..20314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15.8.1prot_P-wetherbeei_contig15.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15 19598..20314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15.8.1

>prot_P-wetherbeei_contig15.8.1 ID=prot_P-wetherbeei_contig15.8.1|Name=mRNA_P-wetherbeei_contig15.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MGTNGPALGNRRVGDNGEADLMYLQDDEFFDDASGSWRDSAGSAGGARFS
SREGSGARRASSSREEDLLALAMWGEWQCPQCTLENEATARYCAACAARR
PNVQQVPPQQQPLPPLQQRQEEPQRPEQPQRGGETPNGT*
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mRNA from alignment at P-wetherbeei_contig15:19478..20420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15.8.1 ID=mRNA_P-wetherbeei_contig15.8.1|Name=mRNA_P-wetherbeei_contig15.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=943bp|location=Sequence derived from alignment at P-wetherbeei_contig15:19478..20420+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCTGCTGCCGCTGCAGGGTCGTCCGCCGACGACCCACTGCCGCAGGC
GCCGCCGGGCAACGGGCGGCAATGGTCAGACGGGGACGACGTCGTCCACC
CTGCTTCCTTTCCCTACAGGATGGGGACGAACGGGCCAGCCCTCGGCAAC
CGCCGCGTCGGCGACAATGGGGAAGCCGACCTGATGTACCTGCAGGATGA
TGAGTTCTTCGACGACGCGTCGGGCTCGTGGAGGGACAGCGCGGGCAGCG
CGGGCGGCGCCAGGTTCTCTTCAAGAGAAGGGAGCGGCGCCCGCCGTGCT
TCTTCTAGTCGGGAGGAGGACCTTCTCGCCCTGGCGATGTGGGGCGAGTG
GCAATGTCCGCAGGTGAGACAAACAAGGGGTAGTGTTTCGGGGATATGGG
CTGGCTGGCTGGCTGGCTGGTAGGATTTGTTGCGTTTTGGGGGAAGAAGC
TGAACTGGAGTGCAGCAATTGCCGCATTATTATTTCTTCGTTCCGGGATG
CCTGAGATGCGCTCAATATGCTACGTCAGGAGCTCAGCGCATCCCATCGG
ATGTTTCTTTCATGTTTCTTTCTCTTGCTTACGGATTCAGCATCGTTGGG
ATTTGCCTTCCGAACCGACCGATGGACCGTCTTCCCCACTGGTTGTCTTT
CTTTGCACAGTGTACACTAGAGAACGAAGCGACCGCGCGTTACTGCGCCG
CGTGCGCGGCACGGCGTCCCAACGTGCAGCAGGTGCCGCCGCAGCAGCAG
CCGTTGCCGCCATTGCAGCAGCGGCAGGAGGAGCCACAAAGACCGGAGCA
GCCACAGCGAGGCGGCGAAACGCCAAATGGAACGTGAAGGGGGAGCAAAT
CCGGCGGTCAATGTCGCTTCTACCCCGGCTCTTAGGGGCTGGGACCTTGG
ATTAGCCTCAAAAGCTGTCATGCTGCTTAATAGGAGAGGTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15:19478..20420+

>mRNA_P-wetherbeei_contig15.8.1 ID=mRNA_P-wetherbeei_contig15.8.1|Name=mRNA_P-wetherbeei_contig15.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig15:19478..20420+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGACGAACGGGCCAGCCCTCGGCAACCGCCGCGTCGGCGACAATGG
GGAAGCCGACCTGATGTACCTGCAGGATGATGAGTTCTTCGACGACGCGT
CGGGCTCGTGGAGGGACAGCGCGGGCAGCGCGGGCGGCGCCAGGTTCTCT
TCAAGAGAAGGGAGCGGCGCCCGCCGTGCTTCTTCTAGTCGGGAGGAGGA
CCTTCTCGCCCTGGCGATGTGGGGCGAGTGGCAATGTCCGCAGTGTACAC
TAGAGAACGAAGCGACCGCGCGTTACTGCGCCGCGTGCGCGGCACGGCGT
CCCAACGTGCAGCAGGTGCCGCCGCAGCAGCAGCCGTTGCCGCCATTGCA
GCAGCGGCAGGAGGAGCCACAAAGACCGGAGCAGCCACAGCGAGGCGGCG
AAACGCCAAATGGAACGTGA
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