mRNA_P-wetherbeei_contig14943.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14943.3.1
Unique NamemRNA_P-wetherbeei_contig14943.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A6A7MD68_9PROT (Redox-sensitive transcriptional activator SoxR n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6A7MD68_9PROT)

HSP 1 Score: 243 bits (621), Expect = 4.550e-80
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
Query:   19 LSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDFEE 462
            L+IGEL+RRTGMSVSAIRFYE+ GLV A+R+SGNQRRF+RADIRRLSF LIAQ+LGLTL+E+ AEL+TLPQ RAP RQDWQ +SARIRG LQ RI MLE+TRDLLDGCIGCGCLSL+ C LYNP DRAA AGAGPRFLLGDRA+DFEE
Sbjct:   38 LTIGELARRTGMSVSAIRFYESRGLVRAVRTSGNQRRFMRADIRRLSFALIAQQLGLTLSEIEAELSTLPQGRAPNRQDWQAISARIRGALQARINMLEKTRDLLDGCIGCGCLSLENCRLYNPNDRAARAGAGPRFLLGDRAQDFEE 185          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A495RVK5_SPHMI (MerR family transcriptional regulator n=1 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RVK5_SPHMI)

HSP 1 Score: 231 bits (590), Expect = 9.380e-76
Identity = 114/146 (78.08%), Postives = 129/146 (88.36%), Query Frame = 1
Query:   19 LSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDF 456
            L+IGEL+RRTG+SVSAIRFYE  GLV++IR+ GNQRRFLR+DIRRLSF LIAQRLGLTLAE+ AEL+TLP  R PT+ DW ++S R+R  L  RI MLERTRDLLDGCIGCGCLSLDRCALYNPGDRAA AGAGPRFL+GDRA+DF
Sbjct:    6 LTIGELARRTGLSVSAIRFYEERGLVSSIRTGGNQRRFLRSDIRRLSFALIAQRLGLTLAEIEAELSTLPDGRVPTQADWTRISRRMRKALDARIAMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAARAGAGPRFLMGDRAEDF 151          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A521LVT7_9HYPH (Redox-sensitive transcriptional activator SoxR n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LVT7_9HYPH)

HSP 1 Score: 225 bits (573), Expect = 5.420e-73
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 1
Query:   16 LLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDFEE 462
            ++SIG+L+RRTG+SV+AIRFYEA G +TAIRS GNQRRFLRADIRR SF LIAQ+LGLTLAE+ AEL TL   R PTR DWQ +S RIRG L+ R+ MLERTRDLLDGCIGCGCLSLDRCALYN GD+AA  GAGPR+LLG+RA+DF +
Sbjct:    1 MVSIGQLARRTGLSVAAIRFYEARGPLTAIRSGGNQRRFLRADIRRFSFALIAQQLGLTLAEIEAELTTLSLGRTPTRSDWQAISKRIRGALEARLHMLERTRDLLDGCIGCGCLSLDRCALYNRGDKAAVGGAGPRYLLGNRAQDFAD 149          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A522CZX1_9CAUL (Redox-sensitive transcriptional activator SoxR n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A522CZX1_9CAUL)

HSP 1 Score: 223 bits (568), Expect = 1.840e-72
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 1
Query:    1 MPQAPLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKD 453
            MP    LSIG+L+RR G+SVSA+RFYEA GLV AIRS GNQRRF+R+DIRRLSF LIAQRLGLTLAE+ AEL+TLP  +AP+ QDW+ +S R+RG L  RI MLERTR+LLDGCIGCGCLSL+RCALYNP DRAA AGAGPR+LLGD   D
Sbjct:    1 MPPPATLSIGDLARRVGISVSAVRFYEARGLVRAIRSEGNQRRFMRSDIRRLSFALIAQRLGLTLAEIEAELSTLPLDQAPSAQDWRAISERMRGALDARIAMLERTRELLDGCIGCGCLSLERCALYNPADRAARAGAGPRYLLGDHWDD 151          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A1H8XSF1_9PROT (MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8XSF1_9PROT)

HSP 1 Score: 222 bits (566), Expect = 2.190e-72
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 1
Query:   52 MSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDFEE 462
            MSVSAIRFYE+ GL+ A+R+SGNQRRFLR+DIRRLSF LIAQ+LGLTL+E+ AEL+ LPQ R PT QDWQ +SARIRG LQ RI+MLE+TRDLLDGCIGCGCLSLD+C LYNP DRAA AGAGPRFLLGDRA+DFE+
Sbjct:    1 MSVSAIRFYESRGLLRAVRTSGNQRRFLRSDIRRLSFALIAQQLGLTLSEIEAELSLLPQGRGPTHQDWQAISARIRGALQARIQMLEKTRDLLDGCIGCGCLSLDKCRLYNPNDRAARAGAGPRFLLGDRAQDFED 137          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: W0ALI0_9SPHN (HTH merR-type domain-containing protein n=1 Tax=Sphingomonas sanxanigenens DSM 19645 = NX02 TaxID=1123269 RepID=W0ALI0_9SPHN)

HSP 1 Score: 221 bits (562), Expect = 1.560e-71
Identity = 111/147 (75.51%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    1 MPQAPLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGD 441
            M Q+ LL+IGEL+RRTG+SVSAIRFYEA GLV+AIR+ GNQRRFLRADIRRLSF LIAQ+LGL+L E+ AELATLP  RAPT+ DW  +SARIRG + +RI ML+RTRD LDGCIGCGCLSL  CALYNP DRAA AGAGPRF+L D
Sbjct:    1 MAQSTLLTIGELARRTGLSVSAIRFYEARGLVSAIRTGGNQRRFLRADIRRLSFALIAQQLGLSLGEIEAELATLPHGRAPTQADWAAISARIRGAIDRRIAMLQRTRDRLDGCIGCGCLSLSNCALYNPEDRAARAGAGPRFVLHD 147          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: UPI0018F3451F (redox-sensitive transcriptional activator SoxR n=1 Tax=Sandaracinobacteroides hominis TaxID=2780086 RepID=UPI0018F3451F)

HSP 1 Score: 219 bits (558), Expect = 5.560e-71
Identity = 108/147 (73.47%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   16 LLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDF 456
            L+ IGEL+RRTG+SVSAIRFYEA GLV  IR++GNQRR+LR+DIRRLSF +IAQ+LGL+L+E++AELATLPQ RAPT+ DW+ +S  IR  L  RI MLE TRDLLDGCIGCGCLSLDRC LYNP DRA  AG GPRFLLG+RA DF
Sbjct:    3 LIPIGELARRTGLSVSAIRFYEARGLVEPIRTAGNQRRYLRSDIRRLSFAMIAQQLGLSLSEITAELATLPQGRAPTQADWEAISTHIRSRLDARIRMLENTRDLLDGCIGCGCLSLDRCKLYNPEDRANQAGPGPRFLLGNRASDF 149          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A537LUD5_9PROT (Redox-sensitive transcriptional activator SoxR n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LUD5_9PROT)

HSP 1 Score: 218 bits (556), Expect = 1.050e-70
Identity = 108/144 (75.00%), Postives = 124/144 (86.11%), Query Frame = 1
Query:   10 APLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGD 441
            +PLL+IGEL+RRTG+SVSAIRFYEA GL++ IR++GNQRRFLR+DIRRLSF L+AQRLGLTL E+  ELA LP  RAPTR+DWQ +S RIR  L+ RI +LER RD LDGCIGCGCLSLDRCALYNP DRAA+ G GPRFLLGD
Sbjct:    2 SPLLTIGELARRTGLSVSAIRFYEAKGLLSPIRTAGNQRRFLRSDIRRLSFALVAQRLGLTLGEIEEELARLPLGRAPTREDWQSVSRRIRDRLETRIALLERMRDRLDGCIGCGCLSLDRCALYNPEDRAAATGPGPRFLLGD 145          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A257UUA5_9PROT (Redox-sensitive transcriptional activator SoxR n=2 Tax=Acidiphilium TaxID=522 RepID=A0A257UUA5_9PROT)

HSP 1 Score: 210 bits (535), Expect = 2.150e-67
Identity = 103/150 (68.67%), Postives = 122/150 (81.33%), Query Frame = 1
Query:   10 APLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAKDFE 459
            A  LSIG+L+RRTG+SVSAIRFYE  GLVTA R +GNQRRF RADIRRLSF LIAQ+LGLT++E+ AELATLP+  AP+  DWQ +  R +  L  +I +L++T +LL GCIGCGCLSLDRCALYNP DRAA AG GPRFLLG++A DFE
Sbjct:    5 AATLSIGDLARRTGLSVSAIRFYETRGLVTATRGAGNQRRFARADIRRLSFALIAQQLGLTISEIEAELATLPRGHAPSAADWQAIGTRFQSALAAKITLLQKTHELLGGCIGCGCLSLDRCALYNPNDRAARAGPGPRFLLGNQASDFE 154          
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Match: A0A4Y8ZSZ3_9SPHN (Redox-sensitive transcriptional activator SoxR n=1 Tax=Sphingomonas parva TaxID=2555898 RepID=A0A4Y8ZSZ3_9SPHN)

HSP 1 Score: 209 bits (531), Expect = 7.670e-67
Identity = 103/144 (71.53%), Postives = 123/144 (85.42%), Query Frame = 1
Query:   10 APLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIRRLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQRIEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGD 441
            A LL+IG+++RRTG+SVSAIRFYEA GL++ IR+ GNQRRFL +DIRRLSF LIAQ+LGL++ ++ AELA LP  RAPTR+DWQ +SARIR  L  RI +L+RTRD LDGCIGCGCLSLDRCALYNP DRAA+ G GPR+LLGD
Sbjct:    2 ARLLTIGDMARRTGVSVSAIRFYEARGLLSPIRTGGNQRRFLPSDIRRLSFALIAQKLGLSVRDIEAELARLPLGRAPTREDWQALSARIRDRLDARITLLQRTRDRLDGCIGCGCLSLDRCALYNPDDRAAANGPGPRYLLGD 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14943.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7MD68_9PROT4.550e-8081.08Redox-sensitive transcriptional activator SoxR n=2... [more]
A0A495RVK5_SPHMI9.380e-7678.08MerR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A521LVT7_9HYPH5.420e-7374.50Redox-sensitive transcriptional activator SoxR n=1... [more]
A0A522CZX1_9CAUL1.840e-7273.51Redox-sensitive transcriptional activator SoxR n=1... [more]
A0A1H8XSF1_9PROT2.190e-7278.83MerR family transcriptional regulator, redox-sensi... [more]
W0ALI0_9SPHN1.560e-7175.51HTH merR-type domain-containing protein n=1 Tax=Sp... [more]
UPI0018F3451F5.560e-7173.47redox-sensitive transcriptional activator SoxR n=1... [more]
A0A537LUD5_9PROT1.050e-7075.00Redox-sensitive transcriptional activator SoxR n=1... [more]
A0A257UUA5_9PROT2.150e-6768.67Redox-sensitive transcriptional activator SoxR n=2... [more]
A0A4Y8ZSZ3_9SPHN7.670e-6771.53Redox-sensitive transcriptional activator SoxR n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14943contigP-wetherbeei_contig14943:988..1455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123269.NX02_24465
Preferred namesoxR
PFAMsMerR,MerR-DNA-bind,MerR_1
Model size468
Max annot lvl204457|Sphingomonadales
KEGG koko:K13639
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.56e-72
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,1RH2U@1224|Proteobacteria,2U73A@28211|Alphaproteobacteria,2K4YD@204457|Sphingomonadales
Descriptiontranscriptional
Cds size468
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.3046901-CDS-P-wetherbeei_contig14943:987..14551683186038.3046901-CDS-P-wetherbeei_contig14943:987..1455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14943 988..1455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14943.3.1prot_P-wetherbeei_contig14943.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14943 988..1455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14943.3.1

>prot_P-wetherbeei_contig14943.3.1 ID=prot_P-wetherbeei_contig14943.3.1|Name=mRNA_P-wetherbeei_contig14943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MPQAPLLSIGELSRRTGMSVSAIRFYEAHGLVTAIRSSGNQRRFLRADIR
RLSFVLIAQRLGLTLAEVSAELATLPQKRAPTRQDWQKMSARIRGTLQQR
IEMLERTRDLLDGCIGCGCLSLDRCALYNPGDRAASAGAGPRFLLGDRAK
DFEEG*
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mRNA from alignment at P-wetherbeei_contig14943:988..1455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14943.3.1 ID=mRNA_P-wetherbeei_contig14943.3.1|Name=mRNA_P-wetherbeei_contig14943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig14943:988..1455+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCAAGCCCCGCTCTTGTCCATCGGCGAGCTTTCCCGCCGCACCGG CATGTCCGTCTCGGCCATCCGCTTCTACGAAGCGCATGGCTTGGTGACGG CGATCCGCAGCAGCGGCAACCAGCGCCGGTTTCTGCGCGCCGACATCAGG CGGCTGTCCTTCGTGCTGATCGCCCAGCGGCTCGGCCTCACCCTGGCCGA GGTCAGCGCGGAGCTCGCGACCCTGCCGCAGAAGCGCGCCCCGACCCGGC AGGACTGGCAGAAGATGAGCGCGCGCATCCGCGGCACCTTGCAGCAGAGG ATCGAAATGCTCGAGAGGACTCGCGACCTGCTCGATGGCTGCATCGGCTG CGGATGCCTGTCGCTCGACCGCTGCGCCCTCTACAATCCCGGTGATCGCG CGGCCAGCGCCGGCGCCGGCCCGCGCTTCCTGCTGGGTGATCGGGCGAAG GACTTCGAGGAAGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14943:988..1455+

>mRNA_P-wetherbeei_contig14943.3.1 ID=mRNA_P-wetherbeei_contig14943.3.1|Name=mRNA_P-wetherbeei_contig14943.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig14943:988..1455+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCAAGCCCCGCTCTTGTCCATCGGCGAGCTTTCCCGCCGCACCGG
CATGTCCGTCTCGGCCATCCGCTTCTACGAAGCGCATGGCTTGGTGACGG
CGATCCGCAGCAGCGGCAACCAGCGCCGGTTTCTGCGCGCCGACATCAGG
CGGCTGTCCTTCGTGCTGATCGCCCAGCGGCTCGGCCTCACCCTGGCCGA
GGTCAGCGCGGAGCTCGCGACCCTGCCGCAGAAGCGCGCCCCGACCCGGC
AGGACTGGCAGAAGATGAGCGCGCGCATCCGCGGCACCTTGCAGCAGAGG
ATCGAAATGCTCGAGAGGACTCGCGACCTGCTCGATGGCTGCATCGGCTG
CGGATGCCTGTCGCTCGACCGCTGCGCCCTCTACAATCCCGGTGATCGCG
CGGCCAGCGCCGGCGCCGGCCCGCGCTTCCTGCTGGGTGATCGGGCGAAG
GACTTCGAGGAAGGCTAG
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