mRNA_P-wetherbeei_contig14893.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14893.1.1
Unique NamemRNA_P-wetherbeei_contig14893.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A835YSN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.590e-27
Identity = 52/68 (76.47%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYLK 204
            G+QVLLT +EKERIF+D+IQSFY+S R++LAD DF+KLKEDLVWEGS VV+LNR ETLFL+AMS+YLK
Sbjct:   52 GEQVLLTLEEKERIFLDSIQSFYYSDRQVLADDDFEKLKEDLVWEGSPVVMLNRQETLFLNAMSAYLK 119          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A835Z693_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z693_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.700e-26
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYLK 204
            G+QVLLT  EKERIF+DAIQSFY+S R++L D DF+KLKEDL+WEGSDVV+LNR ET+FL AM +YLK
Sbjct:   90 GEQVLLTLQEKERIFLDAIQSFYYSDRQILEDDDFEKLKEDLIWEGSDVVMLNRQETVFLYAMQTYLK 157          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: D7FM52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM52_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 8.880e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSY 198
            GK +LLT  EKERIF DAIQSFY++ R+ML D DFDKLKEDL WEGS VVL+NR+E LF+SAM++Y
Sbjct:  114 GKPMLLTTGEKERIFTDAIQSFYYNQRQMLDDDDFDKLKEDLAWEGSPVVLMNRDEQLFMSAMAAY 179          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A7S3JSA6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSA6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.110e-22
Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYLK 204
            GK + LT  EKERIF++A+QS+Y+SGR+ L+D DFD LKEDL+WEGS+  +L+RNETLFL+AM++Y K
Sbjct:   69 GKPIDLTLSEKERIFVEAMQSYYYSGRQTLSDKDFDLLKEDLMWEGSEYAMLSRNETLFLNAMAAYSK 136          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A7S1P1L6_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P1L6_9ALVE)

HSP 1 Score: 92.4 bits (228), Expect = 1.820e-21
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSS 195
            G  V LT  EKER+F+DA+QS+Y SGR+ L D DFD LK+DL WEGSDV+ L RNETLFL+AMS+
Sbjct:   70 GNPVKLTTAEKERVFLDALQSYYSSGRQALTDGDFDLLKQDLAWEGSDVIFLTRNETLFLNAMSA 134          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A0G4EJT7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJT7_VITBC)

HSP 1 Score: 92.4 bits (228), Expect = 5.490e-21
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSS 195
            G  V LT  EKER+F+DA+QS+Y SGR+ L D DFD LK+DL WEGSDV+ L RNETLFL+AMS+
Sbjct:   70 GNPVKLTTAEKERVFLDALQSYYSSGRQALTDGDFDLLKQDLAWEGSDVIFLTRNETLFLNAMSA 134          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A0G4FQF8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FQF8_9ALVE)

HSP 1 Score: 92.4 bits (228), Expect = 5.810e-21
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYLK 204
            GK + LT+++KE IFI+A++SFYF  ++ L+D DFD LK+DL+WEGSD+V+LNR+ET FLSA+ +Y K
Sbjct:   73 GKPITLTKEDKEEIFINALESFYFENKQTLSDEDFDNLKQDLMWEGSDLVMLNRDETKFLSAVQAYAK 140          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A7S2CL01_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL01_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.690e-21
Identity = 40/67 (59.70%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYL 201
            G  ++L+ DEKE+IF++ +QS+Y+ GR++L DADFDKLKEDL+WEGS V +L+R+ET FL+AM +YL
Sbjct:  103 GNPIVLSVDEKEKIFVECMQSYYYDGREVLNDADFDKLKEDLIWEGSPVAILSRDETKFLAAMGAYL 169          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A7S0SSR4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSR4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.520e-20
Identity = 41/68 (60.29%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLFLSAMSSYLK 204
            G+++ LTR+EKERIF+DAIQS+Y+SG+++L D  F++L+EDL WEGS +V L+RNETLF++A+ SY K
Sbjct:   86 GEELALTREEKERIFLDAIQSYYYSGKQILDDKQFNRLREDLTWEGSVLVTLSRNETLFVNAIQSYNK 153          
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Match: A0A7S3ZQ07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQ07_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.410e-20
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    1 GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVVLLNRNETLF 177
            GK+V L++ EKER+FIDAIQS+YF GR++L+DADFD LKEDL WEGS+  +L+RNET F
Sbjct:   92 GKRVSLSKGEKERVFIDAIQSYYFDGRQVLSDADFDLLKEDLAWEGSEYAVLSRNETRF 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSN6_9STRA2.590e-2776.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z693_9STRA7.700e-2673.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FM52_ECTSI8.880e-2371.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JSA6_9STRA7.110e-2263.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1P1L6_9ALVE1.820e-2166.15Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4EJT7_VITBC5.490e-2166.15Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4FQF8_9ALVE5.810e-2158.82Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2CL01_9STRA9.690e-2159.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0SSR4_9STRA1.520e-2060.29Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3ZQ07_9STRA4.410e-2067.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14893contigP-wetherbeei_contig14893:1061..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FM52
Model size204
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0015979,GO:0016020,GO:0016491,GO:0016730,GO:0019684,GO:0019904,GO:0022900,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114
Exons2
Evalue1.46e-23
EggNOG OGs2CE1K@1|root,2QRSK@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010670.1
Descriptionphotosynthetic electron transport in photosystem I
Cds size204
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.864271-CDS-P-wetherbeei_contig14893:1060..11441683186036.864271-CDS-P-wetherbeei_contig14893:1060..1144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14893 1061..1144 +
1683186036.8746238-CDS-P-wetherbeei_contig14893:1483..16031683186036.8746238-CDS-P-wetherbeei_contig14893:1483..1603Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14893 1484..1603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14893.1.1prot_P-wetherbeei_contig14893.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14893 1061..1603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14893.1.1

>prot_P-wetherbeei_contig14893.1.1 ID=prot_P-wetherbeei_contig14893.1.1|Name=mRNA_P-wetherbeei_contig14893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
GKQVLLTRDEKERIFIDAIQSFYFSGRKMLADADFDKLKEDLVWEGSDVV
LLNRNETLFLSAMSSYLK
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mRNA from alignment at P-wetherbeei_contig14893:1061..1603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14893.1.1 ID=mRNA_P-wetherbeei_contig14893.1.1|Name=mRNA_P-wetherbeei_contig14893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig14893:1061..1603+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCAGGTGCTGTTGACACGCGACGAGAAGGAGCGTATTTTTATCGA CGCCATTCAGAGCTTTTACTTCAGCGGCCGCAAGGTGGGTGAAGGTGGGA AGGTGCCCGGATAATGATTTTTTGGATTCCGGATAATGAAAGTTTATGGC TGAAGTGCTGTACTTGTCGTGAAGAATTTGAATGAAGTCCTGGCTTTCCG CAGTGTGGGCATTATCTCCCGGTCGTTTCAAAGCAACAGTTACCTCCGGT GAATGCCAGACCAACCTGAATCCATTCTTCTCTCCTGCCTACATCATTAC TCATTGTGGAGGCCTGCGGAGATAACCATCTCAATAGCGTTCCGCCGCGG TCCGTGCATCTGTCTCGCCTGTTGATCCTGCTCACCTAGTCTACCTGTTC TCCCGGATCTGACACCTAGCCAGATGCTGGCTGACGCAGACTTTGACAAG TTGAAGGAGGACCTCGTGTGGGAAGGCAGCGACGTCGTCCTTCTCAACAG AAACGAGACGCTTTTCCTCAGCGCCATGTCGTCATATCTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14893:1061..1603+

>mRNA_P-wetherbeei_contig14893.1.1 ID=mRNA_P-wetherbeei_contig14893.1.1|Name=mRNA_P-wetherbeei_contig14893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig14893:1061..1603+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCAGGTGCTGTTGACACGCGACGAGAAGGAGCGTATTTTTATCGA
CGCCATTCAGAGCTTTTACTTCAGCGGCCGCAAGATGCTGGCTGACGCAG
ACTTTGACAAGTTGAAGGAGGACCTCGTGTGGGAAGGCAGCGACGTCGTC
CTTCTCAACAGAAACGAGACGCTTTTCCTCAGCGCCATGTCGTCATATCT
CAAG
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