mRNA_P-wetherbeei_contig1489.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1489.1.1
Unique NamemRNA_P-wetherbeei_contig1489.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1489.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1489contigP-wetherbeei_contig1489:866..2936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1671
Hectar predicted targeting categoryother localisation
Exons3
Cds size1668
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.778725-CDS-P-wetherbeei_contig1489:867..11711683186036.778725-CDS-P-wetherbeei_contig1489:867..1171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 868..1171 -
1683186036.7885563-CDS-P-wetherbeei_contig1489:1385..24701683186036.7885563-CDS-P-wetherbeei_contig1489:1385..2470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 1386..2470 -
1683186036.7978323-CDS-P-wetherbeei_contig1489:2657..29361683186036.7978323-CDS-P-wetherbeei_contig1489:2657..2936Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1489 2658..2936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1489.1.1prot_P-wetherbeei_contig1489.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1489 868..2936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1489.1.1

>prot_P-wetherbeei_contig1489.1.1 ID=prot_P-wetherbeei_contig1489.1.1|Name=mRNA_P-wetherbeei_contig1489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=556bp
GGDDGGEGPARKQRRKAENVAIDAERRQIILGLLQQERAFLRSALLERVR
QVAASRAGGSSSGGDGGSGSSDASPAVNAEEAISDNALLRLLEVMMSEGE
AVTCKVSLGTGRHNQATVVAASAGEIGMHLPRLLQKVHQQPQRRPAGSAR
RSGGGSGRGGNSGSANGGTGGGGGDGSSSSNGRSGGGAVGGGSDTEAGGG
KGDGMNNGGSGGDGGRAGRKARTKVSAEDSTGNAGAGKGDCAEAGSKSSR
AAEGSIPEGGGSSSAAGGNNTAGGGSTVGVSTTAGSGSSGLAGSGPIAAR
FEGGKGIAGKGKPLERSESLRGHVPGFPPDLREATVLRAKVLHLFLWRFV
YGGCNRPRGGDDSKGSDDEEGAQTRKSGGGGGGGGGAGASSAISASAAST
PAAVVEAGAAVKTELVEQAASANVAPSQASSQGAVFALEAALLALPLSLF
FQLFGPPDDPAKKFYWLDAARREAADGRSVASASAPVLRGLAHGWFSDGL
LRTLDILRHLDLVVPAAGDPNAAGAAAAGIVTAAAPAAPAKAATVGRGAP
AAAAAN
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mRNA from alignment at P-wetherbeei_contig1489:866..2936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1489.1.1 ID=mRNA_P-wetherbeei_contig1489.1.1|Name=mRNA_P-wetherbeei_contig1489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2071bp|location=Sequence derived from alignment at P-wetherbeei_contig1489:866..2936- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGACGACGGCGGCGAGGGGCCGGCGCGGAAGCAAAGGCGCAAGGC
AGAGAACGTTGCCATTGACGCGGAGCGGCGACAAATCATCCTCGGCCTCT
TGCAGCAAGAACGCGCCTTCCTGCGCTCTGCGCTCCTTGAACGGGTCCGT
CAGGTTGCCGCGAGCCGTGCGGGGGGCAGCAGCAGTGGCGGCGACGGCGG
CAGCGGCAGCAGTGATGCATCGCCTGCCGTGAATGCAGAAGAAGCTATTT
CGGATAATGCGCTGCTGCGGCTGTTGGAGGTGCGTTTGGGCGGCAGCTAA
TCCAAACTTTCAGAAGGGAAGACGGGGCGTGGTAATTCTTCCATTGCTCG
TAAACTTATGAAAACCGTTGTTTTCACTCCGGCCGTCCTACTTTCTCTGA
ATTTTGCGTATTCCTTTCAAACGTGCCATCATGTGTCCGGTGGGCCGGGG
TTGCGGGAGCAAGCAGGTGATGATGAGCGAGGGGGAGGCGGTCACCTGCA
AAGTCTCTTTAGGGACTGGGCGGCATAACCAAGCGACCGTCGTCGCGGCG
AGCGCCGGCGAGATCGGGATGCACTTGCCGCGTCTCCTGCAGAAGGTGCA
TCAGCAGCCACAGCGTCGCCCTGCTGGCAGCGCTCGACGCAGCGGCGGTG
GCAGCGGCAGGGGCGGCAACAGCGGCAGCGCCAATGGCGGCACTGGCGGG
GGCGGAGGCGACGGTAGCAGCAGCAGCAATGGCAGGAGCGGCGGAGGCGC
GGTCGGCGGTGGCAGCGACACTGAAGCTGGCGGCGGCAAAGGTGATGGCA
TGAACAACGGTGGCAGCGGTGGCGACGGCGGCCGCGCTGGGAGGAAAGCC
CGAACTAAAGTCAGTGCCGAGGACTCCACTGGGAACGCCGGTGCTGGGAA
AGGAGACTGTGCCGAAGCCGGATCCAAATCTTCTAGGGCCGCCGAAGGCA
GCATTCCTGAGGGCGGTGGCAGCAGTAGCGCGGCTGGCGGAAACAACACT
GCCGGCGGTGGCAGCACTGTGGGCGTTAGCACCACTGCCGGTAGCGGCAG
CAGCGGGCTTGCGGGAAGTGGCCCCATAGCAGCTCGCTTCGAGGGCGGCA
AAGGCATTGCCGGCAAAGGCAAGCCGCTGGAGCGAAGCGAAAGTCTCCGG
GGCCATGTGCCAGGTTTCCCGCCCGACCTCCGCGAGGCGACGGTCCTCCG
CGCCAAGGTTCTGCACTTGTTCCTGTGGCGGTTCGTTTACGGCGGCTGCA
ACCGTCCCCGCGGCGGCGATGACAGCAAGGGCTCAGACGACGAGGAGGGT
GCGCAAACCAGGAAGAGCGGTGGCGGCGGCGGTGGCGGTGGCGGCGCCGG
CGCTTCCAGCGCTATCAGTGCAAGTGCGGCGAGCACTCCTGCGGCAGTGG
TGGAAGCGGGGGCAGCGGTGAAGACAGAGCTGGTGGAGCAGGCGGCAAGC
GCCAACGTTGCGCCATCGCAAGCGAGCTCCCAAGGCGCTGTCTTTGCGCT
GGAGGCGGCGCTGCTCGCTCTTCCGCTATCTCTCTTCTTCCAGCTGTTCG
GGTGAGTATTCGTTTCCGTGGTGCGGCCGGCGTCTCTTTGCGTGATATTT
GGTTAAAAAGAATTTGGCAATCCATCTCGATCATCTGGAATTGAAATGTC
TCGTTATGCTTGCAAGCTCTCATCCAGTCTGCCTCTATGATCCTTTTGGG
TTTTAAACCAATCACTAGAAAACTCTCTTTTCACGGTATGCCCGCGCCTC
CTCTGTAAATCGCAGCCCGCCCGACGACCCTGCGAAAAAATTCTACTGGC
TGGATGCAGCGCGGCGCGAGGCGGCTGATGGCCGGTCGGTGGCGTCCGCA
TCGGCGCCGGTGCTCCGGGGTCTGGCGCACGGTTGGTTTTCGGACGGACT
CCTCCGGACACTGGATATCCTGCGTCACCTCGACCTCGTGGTCCCGGCGG
CGGGGGACCCCAACGCTGCCGGCGCGGCCGCCGCTGGCATCGTTACAGCC
GCTGCTCCCGCTGCTCCAGCCAAAGCTGCGACCGTCGGGCGCGGCGCCCC
AGCGGCGGCGGCGGCCAATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1489:866..2936-

>mRNA_P-wetherbeei_contig1489.1.1 ID=mRNA_P-wetherbeei_contig1489.1.1|Name=mRNA_P-wetherbeei_contig1489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1668bp|location=Sequence derived from alignment at P-wetherbeei_contig1489:866..2936- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGACGACGGCGGCGAGGGGCCGGCGCGGAAGCAAAGGCGCAAGGC
AGAGAACGTTGCCATTGACGCGGAGCGGCGACAAATCATCCTCGGCCTCT
TGCAGCAAGAACGCGCCTTCCTGCGCTCTGCGCTCCTTGAACGGGTCCGT
CAGGTTGCCGCGAGCCGTGCGGGGGGCAGCAGCAGTGGCGGCGACGGCGG
CAGCGGCAGCAGTGATGCATCGCCTGCCGTGAATGCAGAAGAAGCTATTT
CGGATAATGCGCTGCTGCGGCTGTTGGAGGTGATGATGAGCGAGGGGGAG
GCGGTCACCTGCAAAGTCTCTTTAGGGACTGGGCGGCATAACCAAGCGAC
CGTCGTCGCGGCGAGCGCCGGCGAGATCGGGATGCACTTGCCGCGTCTCC
TGCAGAAGGTGCATCAGCAGCCACAGCGTCGCCCTGCTGGCAGCGCTCGA
CGCAGCGGCGGTGGCAGCGGCAGGGGCGGCAACAGCGGCAGCGCCAATGG
CGGCACTGGCGGGGGCGGAGGCGACGGTAGCAGCAGCAGCAATGGCAGGA
GCGGCGGAGGCGCGGTCGGCGGTGGCAGCGACACTGAAGCTGGCGGCGGC
AAAGGTGATGGCATGAACAACGGTGGCAGCGGTGGCGACGGCGGCCGCGC
TGGGAGGAAAGCCCGAACTAAAGTCAGTGCCGAGGACTCCACTGGGAACG
CCGGTGCTGGGAAAGGAGACTGTGCCGAAGCCGGATCCAAATCTTCTAGG
GCCGCCGAAGGCAGCATTCCTGAGGGCGGTGGCAGCAGTAGCGCGGCTGG
CGGAAACAACACTGCCGGCGGTGGCAGCACTGTGGGCGTTAGCACCACTG
CCGGTAGCGGCAGCAGCGGGCTTGCGGGAAGTGGCCCCATAGCAGCTCGC
TTCGAGGGCGGCAAAGGCATTGCCGGCAAAGGCAAGCCGCTGGAGCGAAG
CGAAAGTCTCCGGGGCCATGTGCCAGGTTTCCCGCCCGACCTCCGCGAGG
CGACGGTCCTCCGCGCCAAGGTTCTGCACTTGTTCCTGTGGCGGTTCGTT
TACGGCGGCTGCAACCGTCCCCGCGGCGGCGATGACAGCAAGGGCTCAGA
CGACGAGGAGGGTGCGCAAACCAGGAAGAGCGGTGGCGGCGGCGGTGGCG
GTGGCGGCGCCGGCGCTTCCAGCGCTATCAGTGCAAGTGCGGCGAGCACT
CCTGCGGCAGTGGTGGAAGCGGGGGCAGCGGTGAAGACAGAGCTGGTGGA
GCAGGCGGCAAGCGCCAACGTTGCGCCATCGCAAGCGAGCTCCCAAGGCG
CTGTCTTTGCGCTGGAGGCGGCGCTGCTCGCTCTTCCGCTATCTCTCTTC
TTCCAGCTGTTCGGCCCGCCCGACGACCCTGCGAAAAAATTCTACTGGCT
GGATGCAGCGCGGCGCGAGGCGGCTGATGGCCGGTCGGTGGCGTCCGCAT
CGGCGCCGGTGCTCCGGGGTCTGGCGCACGGTTGGTTTTCGGACGGACTC
CTCCGGACACTGGATATCCTGCGTCACCTCGACCTCGTGGTCCCGGCGGC
GGGGGACCCCAACGCTGCCGGCGCGGCCGCCGCTGGCATCGTTACAGCCG
CTGCTCCCGCTGCTCCAGCCAAAGCTGCGACCGTCGGGCGCGGCGCCCCA
GCGGCGGCGGCGGCCAAT
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