mRNA_P-wetherbeei_contig14866.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14866.1.1
Unique NamemRNA_P-wetherbeei_contig14866.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14866.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14866contigP-wetherbeei_contig14866:671..1668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1000
Hectar predicted targeting categoryother localisation
Exons1
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.0578284-CDS-P-wetherbeei_contig14866:670..14561683186036.0578284-CDS-P-wetherbeei_contig14866:670..1456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14866 671..1456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.0733888-UTR-P-wetherbeei_contig14866:1456..16681683186036.0733888-UTR-P-wetherbeei_contig14866:1456..1668Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14866 1457..1668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14866.1.1prot_P-wetherbeei_contig14866.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14866 671..1456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14866.1.1

>prot_P-wetherbeei_contig14866.1.1 ID=prot_P-wetherbeei_contig14866.1.1|Name=mRNA_P-wetherbeei_contig14866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
AASAGAPAAAAGGASGPTAPAPAAVAAPAVTAAGGGLGGSGSGRGAGAAS
GSGGGCSLGAGAGRGAPSPGGRGAMASAGGRSCGTRVNGIPASPAGGAAR
PNSATPNPGAVRRTGAVARAARGTRPGQRAPAVAVAGRSRGQAASTAAAD
GSGASMPAAGAAASAAAASAAEDAEVSASGEEMAAGEVDAVGTAAAAGAG
AAEPDSAAEGSFSSDALPPAEDGENSSKGGDISSGGDGGGDGDAGSGSCS
DDTVPAQPLSP*
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mRNA from alignment at P-wetherbeei_contig14866:671..1668+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14866.1.1 ID=mRNA_P-wetherbeei_contig14866.1.1|Name=mRNA_P-wetherbeei_contig14866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=998bp|location=Sequence derived from alignment at P-wetherbeei_contig14866:671..1668+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAGCGCCGGTGCTCCAGCCGCTGCTGCTGGCGGCGCGTCGGGTCC
GACAGCTCCGGCGCCTGCTGCGGTGGCAGCGCCTGCGGTGACAGCGGCTG
GCGGTGGACTCGGTGGCAGCGGCAGTGGACGCGGCGCAGGCGCGGCGAGC
GGCAGCGGCGGCGGTTGTTCGTTGGGGGCGGGGGCCGGTCGTGGTGCCCC
TTCGCCGGGCGGCCGCGGAGCCATGGCTTCGGCGGGCGGGCGAAGCTGCG
GCACCAGGGTGAATGGCATCCCGGCCTCTCCTGCGGGCGGCGCCGCGAGG
CCGAATTCTGCCACACCGAATCCTGGCGCTGTCCGCCGCACGGGCGCTGT
CGCCAGGGCTGCCCGGGGGACGCGTCCTGGCCAACGTGCTCCCGCTGTGG
CGGTGGCCGGCCGAAGTAGAGGGCAGGCGGCGTCAACTGCGGCGGCCGAT
GGCAGCGGCGCTTCGATGCCTGCCGCAGGCGCAGCCGCCTCTGCTGCCGC
TGCTTCTGCCGCCGAGGACGCCGAAGTCAGCGCCTCGGGTGAGGAGATGG
CCGCAGGTGAAGTTGATGCCGTCGGCACGGCAGCAGCTGCTGGCGCCGGT
GCAGCCGAGCCCGATTCGGCGGCCGAGGGATCTTTTTCTAGCGATGCGTT
GCCGCCGGCGGAGGATGGCGAAAATAGCAGTAAGGGCGGAGATATCAGCA
GCGGCGGTGATGGTGGCGGCGATGGTGACGCTGGCAGCGGCAGCTGCTCG
GACGACACAGTGCCGGCTCAGCCGCTCTCGCCGTAGCCACCAGTCCTGGC
TCTTCGGGCTTGACGGTGCCTTGCGGACGCGCGGCTGCGCTGTTCGCGAC
AGAACGGGGCGGGTGGCACGGTCGGGTATTGAAACAATTATCAGGAAGAA
AAGCTCGGGGCTTTTCACTCTGTTTGCCGGAACGAGCGGGCGTCGGCAAG
GACGACCGCTAAACCGGGCATAGCGCCCACGCGCAAAAAGGGGAGAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14866:671..1668+

>mRNA_P-wetherbeei_contig14866.1.1 ID=mRNA_P-wetherbeei_contig14866.1.1|Name=mRNA_P-wetherbeei_contig14866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig14866:671..1668+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAGCGCCGGTGCTCCAGCCGCTGCTGCTGGCGGCGCGTCGGGTCC
GACAGCTCCGGCGCCTGCTGCGGTGGCAGCGCCTGCGGTGACAGCGGCTG
GCGGTGGACTCGGTGGCAGCGGCAGTGGACGCGGCGCAGGCGCGGCGAGC
GGCAGCGGCGGCGGTTGTTCGTTGGGGGCGGGGGCCGGTCGTGGTGCCCC
TTCGCCGGGCGGCCGCGGAGCCATGGCTTCGGCGGGCGGGCGAAGCTGCG
GCACCAGGGTGAATGGCATCCCGGCCTCTCCTGCGGGCGGCGCCGCGAGG
CCGAATTCTGCCACACCGAATCCTGGCGCTGTCCGCCGCACGGGCGCTGT
CGCCAGGGCTGCCCGGGGGACGCGTCCTGGCCAACGTGCTCCCGCTGTGG
CGGTGGCCGGCCGAAGTAGAGGGCAGGCGGCGTCAACTGCGGCGGCCGAT
GGCAGCGGCGCTTCGATGCCTGCCGCAGGCGCAGCCGCCTCTGCTGCCGC
TGCTTCTGCCGCCGAGGACGCCGAAGTCAGCGCCTCGGGTGAGGAGATGG
CCGCAGGTGAAGTTGATGCCGTCGGCACGGCAGCAGCTGCTGGCGCCGGT
GCAGCCGAGCCCGATTCGGCGGCCGAGGGATCTTTTTCTAGCGATGCGTT
GCCGCCGGCGGAGGATGGCGAAAATAGCAGTAAGGGCGGAGATATCAGCA
GCGGCGGTGATGGTGGCGGCGATGGTGACGCTGGCAGCGGCAGCTGCTCG
GACGACACAGTGCCGGCTCAGCCGCTCTCGCCGTAG
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