mRNA_P-wetherbeei_contig1469.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1469.1.1
Unique NamemRNA_P-wetherbeei_contig1469.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1469.1.1 vs. uniprot
Match: D7FRD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD6_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 8.660e-21
Identity = 106/305 (34.75%), Postives = 130/305 (42.62%), Query Frame = 1 
Query:  112 WSGIIVGAVEAKIKRATADTTRWRERADMAAADAESAFYRYYRTLQPVLRALAIQQGAVRAITMRGAVALTAIVPVPPQSSFSMSAPAPRVMLWTRRAVRQALRVVPPLERPTPRHVTLATALLPPG-------------------------------TGARPWAGE---------VPDPDVNLLAAAAADXXXXXXXXXDRSVAATAAAVTGQTMRRLPRREAATLAAPEGLYERV-RLSAAAAERASWARRRLSIAEG-MLPHVDKETSPYDRRWRAQLCVVWRGVDASLSATRCLQIGNRRL 900
            W   ++GA+E  I R   D  R R R  MAAAD ESAFYRYY  LQPV+ AL  Q+ A++  + R  V L  +            A    V LW+RR VRQ  R  PP  R     V L T  LP G                                GAR + GE         V DPDV+ L                            ++ + L  R    LA PE LY+RV R+ A+   R S +RRR S +EG     VDK  S  D RW  +L   W GVD SL ATR LQIG+R++
Sbjct:  683 WYVTVLGAMEKSIARFDKDEERKRNREGMAAADLESAFYRYYCKLQPVIMALNQQRQALKDFSTREGVTLETLASASDPRVRRGLARRETVTLWSRRDVRQLQRQFPPQRRLPEEKVVLMTVGLPAGGERPKWRSAKGGSSGXXXXXXGEGLGEGTDRIGARGYCGEARGAGRLGGVADPDVDALV---------------------------RSCQPLIPRRTIDLAGPERLYQRVTRMRASQLHRLS-SRRRASFSEGDFAARVDKTVSGEDLRWAQKLGRYWMGVDNSLGATRYLQIGDRKV 959
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BLAST of mRNA_P-wetherbeei_contig1469.1.1 vs. uniprot
Match: A0A6H5J9Y8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.500e-7
Identity = 101/349 (28.94%), Postives = 128/349 (36.68%), Query Frame = 1 
Query:  112 WSGIIVGAVEAKIKRATADTTRWRERADMAAADAESAFYRYYRTLQPVLRALAIQQGAVRAITMRGAVALTAIVPV-------PPQSSFSM------SAPAPRV----------MLWTRRAVRQALRVVPPLERPTPRHVTLATALLPPG-------------------------------TGARPWAGE---------VPDPDVNLLAAAAADXXXXXXXXXDRSVAATAAAVTGQTMRRLPRREAATLAAPEGLYERVRLSAAAAERASWARRRLSIAEG-MLPHVDKETSPYDRRWRAQLCVVWRGVDASLSATRCLQIGNRRLA----RLTAQRHLPGRRGAWRY 954
            W   ++GA+E  I R             MAAAD ESAFYRYY  LQPV+ AL  Q+ A++  + R A ++             PP+    +      SA  PRV           LW+RR VRQ  R  PP  R     V L T  LP G                                GAR + GE         V DPDV+ L                             + + L  R    +A PE LY+RV    A+      +RRR S +EG     VDK  S  D RW  +L     G   S S   C   G+R L     ++     L GR+ A RY
Sbjct:  783 WYVTVLGAMEKSIARFXXXXXXXXXXXGMAAADLESAFYRYYSKLQPVIMALNQQRQALKDFSTRRARSIARHTSATHDRERTPPRRPEGVTLETLASASDPRVGRGLARRETVTLWSRRDVRQLQRQFPPRLRLPEEKVVLMTVGLPAGGDRPKWRSAKDGSSGSSSSSGGEALGEGTDRIGARGYCGEARGAGRLGGVADPDVDALV---------------------------WSCQPLTSRRTIDIAGPERLYQRVTRMRASQLHRLTSRRRASFSEGDFAARVDKTVSAEDLRWAQKL-----GRSGSQSDGCCEANGSRGLGASSIKVALLGFLEGRQPAKRY 1099
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRD6_ECTSI8.660e-2134.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Y8_9PHAE3.500e-728.94WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1469contigP-wetherbeei_contig1469:13..1863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRD6
PFAMsRCC1,RCC1_2
Model size1545
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons4
Evalue1.42e-21
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size1545
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.2351198-CDS-P-wetherbeei_contig1469:12..3591683186030.2351198-CDS-P-wetherbeei_contig1469:12..359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1469 13..359 +
1683186030.2450492-CDS-P-wetherbeei_contig1469:431..10891683186030.2450492-CDS-P-wetherbeei_contig1469:431..1089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1469 432..1089 +
1683186030.2522764-CDS-P-wetherbeei_contig1469:1245..14711683186030.2522764-CDS-P-wetherbeei_contig1469:1245..1471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1469 1246..1471 +
1683186030.2676792-CDS-P-wetherbeei_contig1469:1549..18631683186030.2676792-CDS-P-wetherbeei_contig1469:1549..1863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1469 1550..1863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1469.1.1prot_P-wetherbeei_contig1469.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1469 13..1863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1469.1.1

>prot_P-wetherbeei_contig1469.1.1 ID=prot_P-wetherbeei_contig1469.1.1|Name=mRNA_P-wetherbeei_contig1469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=515bp
HAAAVVRRAWRAFAARQDARNARTAAAARITAAATQAWSGIIVGAVEAKI
KRATADTTRWRERADMAAADAESAFYRYYRTLQPVLRALAIQQGAVRAIT
MRGAVALTAIVPVPPQSSFSMSAPAPRVMLWTRRAVRQALRVVPPLERPT
PRHVTLATALLPPGTGARPWAGEVPDPDVNLLAAAAADAAAATAAAADRS
VAATAAAVTGQTMRRLPRREAATLAAPEGLYERVRLSAAAAERASWARRR
LSIAEGMLPHVDKETSPYDRRWRAQLCVVWRGVDASLSATRCLQIGNRRL
ARLTAQRHLPGRRGAWRYGRFLGGFVPGSSDPDAARGRPGRGMPAHVGRS
HSLCAPERASAALITWQQRVEDFAAVLAAGAAAGYPASDDAPGVAWTRRL
RWALAGLSSDGILLRVAAAEAFACDSLRIAARAAAAKIKLDSPDTASKAA
AAVASVAAADGNSAGGPTDGGGSWLTAAVVLSLPWTQLDDGSGNFYYYNG
ETGESTWTPPPYSP*
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mRNA from alignment at P-wetherbeei_contig1469:13..1863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1469.1.1 ID=mRNA_P-wetherbeei_contig1469.1.1|Name=mRNA_P-wetherbeei_contig1469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1851bp|location=Sequence derived from alignment at P-wetherbeei_contig1469:13..1863+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCGCCGCCGTCGTCCGGCGCGCGTGGCGGGCATTCGCGGCGCGTCA
GGATGCGCGGAATGCCCGCACGGCGGCGGCGGCGCGCATCACGGCGGCAG
CGACGCAGGCGTGGTCCGGCATTATCGTGGGCGCCGTCGAGGCCAAGATC
AAGCGGGCGACCGCCGACACCACCAGGTGGCGAGAACGGGCCGACATGGC
CGCGGCGGACGCTGAGAGTGCCTTCTACCGCTACTACCGCACGCTGCAGC
CGGTACTACGCGCGCTCGCGATACAGCAGGGTGCTGTGCGCGCCATCACG
ATGCGCGGCGCCGTGGCCTTGACCGCCATCGTCCCAGTGCCGCCGCAGTC
GCCGGCGGCGGAACCAGCGGCGGCGGCACTGCTCCTGCGGAGGACTGCCG
CTATTGTCGGCAGCGCCAGAAGCAGCTTTAGCATGTCTGCGCCGGCGCCG
CGCGTCATGCTGTGGACGCGGCGAGCGGTGCGCCAGGCGCTGCGGGTCGT
GCCGCCGCTGGAACGCCCGACACCGCGGCACGTCACCCTCGCTACGGCGT
TGCTGCCTCCGGGCACCGGCGCGCGCCCGTGGGCCGGAGAGGTGCCGGAC
CCGGACGTCAACCTCCTCGCCGCCGCCGCCGCCGACGCAGCCGCCGCCAC
CGCCGCCGCCGCCGACAGGTCTGTCGCGGCCACTGCCGCAGCTGTCACGG
GGCAAACCATGAGACGACTCCCACGGCGCGAAGCGGCGACGCTGGCGGCG
CCGGAGGGCCTGTACGAGCGAGTGCGACTGAGCGCCGCCGCGGCGGAGCG
CGCGTCGTGGGCGCGGCGCCGCCTCAGCATCGCTGAGGGGATGCTGCCGC
ACGTCGACAAGGAAACGTCGCCGTACGACCGCCGGTGGCGGGCGCAGCTG
TGTGTTGTCTGGCGCGGTGTCGACGCCTCGTTGTCGGCGACGCGCTGCCT
GCAGATCGGCAACCGGCGGCTGGCACGGCTGACGGCGCAGAGGCACTTGC
CGGGCCGCCGCGGTGCCTGGCGGTATGGCCGCTTCCTCGGCGGCTTCGTA
CCGGGGTCCAGCGATCCGGACGCGGCTGTCATTCTCGCCAAGAAGCATGG
CGGCGGCGGCAACGGCGACGGTGGCGGTACTTGTTTCGGCGGCGGCCGCA
GCAGCGGCGACGTTTCCCGAAACAAAGAGCCGGCGGGAAGAACCCGACCA
GACAGCTGCACCAGCAGCGGCAGCGGTCGCCAGCGGGGACGGCCGGGGCG
GGGGATGCCGGCACATGTCGGCCGAAGCCACTCGCTGTGCGCGCCAGAGC
GGGCATCCGCGGCGCTCATCACGTGGCAGCAGCGCGTGGAAGATTTTGCG
GCGGTTCTCGCAGCCGGTGCGGCGGCAGGATATCCAGCGAGCGACGACGC
GCCGGGAGTCGCATGGACGCGCCGGCTCCGCTGGGCGCTGGCAGGGCTCT
CCAGCGACGGTGGCGCGGGCAATGGCGGCAGCGACCAGCCAGGCAAGGCT
GGTGCAGCTGGCCAGGATCCAGATGCAGCCGCGGCAGGCATCCTATTGCG
TGTGGCCGCGGCGGAAGCATTTGCGTGCGACAGCCTGCGCATCGCTGCCC
GGGCGGCCGCGGCAAAGATCAAGTTGGACTCGCCGGATACCGCAAGCAAG
GCAGCCGCTGCTGTCGCCTCGGTGGCGGCGGCGGACGGCAACTCCGCTGG
CGGGCCGACGGACGGCGGCGGCAGCTGGCTGACGGCAGCTGTCGTTCTGT
CATTGCCGTGGACGCAGCTCGACGACGGAAGCGGAAATTTCTATTACTAC
AACGGCGAGACGGGCGAGAGCACGTGGACGCCACCCCCGTATTCTCCGTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1469:13..1863+

>mRNA_P-wetherbeei_contig1469.1.1 ID=mRNA_P-wetherbeei_contig1469.1.1|Name=mRNA_P-wetherbeei_contig1469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1545bp|location=Sequence derived from alignment at P-wetherbeei_contig1469:13..1863+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCGCCGCCGTCGTCCGGCGCGCGTGGCGGGCATTCGCGGCGCGTCA
GGATGCGCGGAATGCCCGCACGGCGGCGGCGGCGCGCATCACGGCGGCAG
CGACGCAGGCGTGGTCCGGCATTATCGTGGGCGCCGTCGAGGCCAAGATC
AAGCGGGCGACCGCCGACACCACCAGGTGGCGAGAACGGGCCGACATGGC
CGCGGCGGACGCTGAGAGTGCCTTCTACCGCTACTACCGCACGCTGCAGC
CGGTACTACGCGCGCTCGCGATACAGCAGGGTGCTGTGCGCGCCATCACG
ATGCGCGGCGCCGTGGCCTTGACCGCCATCGTCCCAGTGCCGCCGCAAAG
CAGCTTTAGCATGTCTGCGCCGGCGCCGCGCGTCATGCTGTGGACGCGGC
GAGCGGTGCGCCAGGCGCTGCGGGTCGTGCCGCCGCTGGAACGCCCGACA
CCGCGGCACGTCACCCTCGCTACGGCGTTGCTGCCTCCGGGCACCGGCGC
GCGCCCGTGGGCCGGAGAGGTGCCGGACCCGGACGTCAACCTCCTCGCCG
CCGCCGCCGCCGACGCAGCCGCCGCCACCGCCGCCGCCGCCGACAGGTCT
GTCGCGGCCACTGCCGCAGCTGTCACGGGGCAAACCATGAGACGACTCCC
ACGGCGCGAAGCGGCGACGCTGGCGGCGCCGGAGGGCCTGTACGAGCGAG
TGCGACTGAGCGCCGCCGCGGCGGAGCGCGCGTCGTGGGCGCGGCGCCGC
CTCAGCATCGCTGAGGGGATGCTGCCGCACGTCGACAAGGAAACGTCGCC
GTACGACCGCCGGTGGCGGGCGCAGCTGTGTGTTGTCTGGCGCGGTGTCG
ACGCCTCGTTGTCGGCGACGCGCTGCCTGCAGATCGGCAACCGGCGGCTG
GCACGGCTGACGGCGCAGAGGCACTTGCCGGGCCGCCGCGGTGCCTGGCG
GTATGGCCGCTTCCTCGGCGGCTTCGTACCGGGGTCCAGCGATCCGGACG
CGGCTCGGGGACGGCCGGGGCGGGGGATGCCGGCACATGTCGGCCGAAGC
CACTCGCTGTGCGCGCCAGAGCGGGCATCCGCGGCGCTCATCACGTGGCA
GCAGCGCGTGGAAGATTTTGCGGCGGTTCTCGCAGCCGGTGCGGCGGCAG
GATATCCAGCGAGCGACGACGCGCCGGGAGTCGCATGGACGCGCCGGCTC
CGCTGGGCGCTGGCAGGGCTCTCCAGCGACGGCATCCTATTGCGTGTGGC
CGCGGCGGAAGCATTTGCGTGCGACAGCCTGCGCATCGCTGCCCGGGCGG
CCGCGGCAAAGATCAAGTTGGACTCGCCGGATACCGCAAGCAAGGCAGCC
GCTGCTGTCGCCTCGGTGGCGGCGGCGGACGGCAACTCCGCTGGCGGGCC
GACGGACGGCGGCGGCAGCTGGCTGACGGCAGCTGTCGTTCTGTCATTGC
CGTGGACGCAGCTCGACGACGGAAGCGGAAATTTCTATTACTACAACGGC
GAGACGGGCGAGAGCACGTGGACGCCACCCCCGTATTCTCCGTGA
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