mRNA_P-wetherbeei_contig14665.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14665.1.1
Unique NamemRNA_P-wetherbeei_contig14665.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A6N7I9V1_9ACTN (DUF664 domain-containing protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A6N7I9V1_9ACTN)

HSP 1 Score: 207 bits (528), Expect = 5.090e-66
Identity = 96/142 (67.61%), Postives = 115/142 (80.99%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQRSMS----DEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSA 414
            GGLIKH A+VERNW + +LQ+   S    +E Y+ +F +  DETLADV+  Y+ VA  T  ++A I+DLGQAVPVP+GVPWFPDDV+AWSVRWVL HLI+ETARHAGHAD++RE VDGATAFPLMAAAEGWPATPW+ PW A
Sbjct:   50 GGLIKHVADVERNWINVVLQREQASREDAEEDYVANFRLGPDETLADVLDHYEQVATETEAVIAGIEDLGQAVPVPRGVPWFPDDVEAWSVRWVLLHLIEETARHAGHADIIRECVDGATAFPLMAAAEGWPATPWLQPWEA 191          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A848DEI8_9PSEU (DinB family protein n=1 Tax=Pseudonocardia bannensis TaxID=630973 RepID=A0A848DEI8_9PSEU)

HSP 1 Score: 205 bits (521), Expect = 1.280e-65
Identity = 94/139 (67.63%), Postives = 113/139 (81.29%), Query Frame = 1
Query:    7 LIKHGANVERNWADTILQQ-RSMSDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSATE 420
            +IKH A+ ER W DT+LQ+ R   ++ YLD F++  DETLADV+A YD VAA T E VA + DLGQ VPVP+GVPWFPDD++AWSVRWVL H+I+ETARHAGHAD+VRESVDGATA+PLMAA EGWP TPWM PW+  +
Sbjct:    1 MIKHVAHTERGWIDTMLQRDRDTGEDQYLDGFTLGPDETLADVLAFYDRVAAETEEAVAGVSDLGQPVPVPQGVPWFPDDIEAWSVRWVLLHVIEETARHAGHADIVRESVDGATAYPLMAAVEGWPETPWMKPWTPAD 139          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: UPI001F2B3278 (DinB family protein n=1 Tax=Amycolatopsis sp. GM8 TaxID=2896530 RepID=UPI001F2B3278)

HSP 1 Score: 201 bits (511), Expect = 1.900e-63
Identity = 95/144 (65.97%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQ---QRSMSDEI--YLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSAT 417
            GGL+KH  + ER W +T+LQ   + +M +    YLD F   +D+TL  VIA+Y+     T EI+A I DLGQ VPVPKGVPWFPDD+DAWSVRWVL HLIQETARHAGHAD+VRE +DGATAFPLMAAAE WPATPWMTPW  T
Sbjct:   50 GGLLKHVTSTERGWMNTVLQRPPEGTMEERAGEYLDDFQFTEDDTLPAVIADYELAGRETEEIIAGIADLGQPVPVPKGVPWFPDDIDAWSVRWVLLHLIQETARHAGHADIVREHIDGATAFPLMAAAEDWPATPWMTPWQPT 193          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A8H9MEK5_9PSEU (Uncharacterized protein n=1 Tax=Amycolatopsis bartoniae TaxID=941986 RepID=A0A8H9MEK5_9PSEU)

HSP 1 Score: 198 bits (504), Expect = 2.200e-62
Identity = 94/141 (66.67%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQR-----SMSDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPW 408
            GGLIKH A  ER W DT+LQ+R         E YL  F +   ETLADVIAEY      T E+++AI DLG+ VPVPKGVPWFP DVD WSVRWVL HLIQETARHAGHAD++RE +DGATAFPLMAAAEGWP TPW+ PW
Sbjct:   50 GGLIKHAARTERGWMDTVLQRRPEGTLQQRAEQYLADFQLTGSETLADVIAEYRQAGRETEEVISAIPDLGKPVPVPKGVPWFPPDVDEWSVRWVLLHLIQETARHAGHADIIREHLDGATAFPLMAAAEGWPETPWIKPW 190          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A4R6SKA7_9PSEU (Uncharacterized protein DUF664 n=1 Tax=Labedaea rhizosphaerae TaxID=598644 RepID=A0A4R6SKA7_9PSEU)

HSP 1 Score: 198 bits (503), Expect = 2.830e-62
Identity = 95/137 (69.34%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQ-RSMSDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPW 408
            GGLIKH A+ E  W DT+LQQ ++M  E Y+ +F + DDETLADV+A YD VAART  +VA   DLG  VP+PKGVPWFPD+  +WSVRWVL HLIQETARHAGHAD+VRE VDGATA+PLMAAAEGWP +PWM PW
Sbjct:   50 GGLIKHVAHTEDGWMDTVLQQPQAMDPEQYMANFRLGDDETLADVLAFYDKVAARTESVVAGFADLGAEVPIPKGVPWFPDE-GSWSVRWVLLHLIQETARHAGHADIVREHVDGATAYPLMAAAEGWPESPWMKPW 185          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A1H3SI54_9PSEU (Uncharacterized protein n=1 Tax=Amycolatopsis xylanica TaxID=589385 RepID=A0A1H3SI54_9PSEU)

HSP 1 Score: 197 bits (502), Expect = 4.570e-62
Identity = 94/144 (65.28%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQRSM----SDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSATE 420
            GGLIKH A VE  W D +LQ+ S     S + Y + F + +DETL  V+A Y+ VA RT E++A I+DLGQAVPVPKGVPWFP DV+AWSVRWVL HLIQETARHAGHAD+VRE +DGATA PL+AAAE WP TPWM PWS  +
Sbjct:   50 GGLIKHVATVEDGWIDIVLQKPSEPGANSQDDYANGFRLLEDETLEGVLARYEEVARRTEEVIAGIEDLGQAVPVPKGVPWFPPDVEAWSVRWVLLHLIQETARHAGHADLVREHIDGATAMPLLAAAENWPETPWMKPWSPAD 193          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: UPI001A8EC0E8 (DUF664 domain-containing protein n=1 Tax=Amycolatopsis sp. MtRt-6 TaxID=2792782 RepID=UPI001A8EC0E8)

HSP 1 Score: 195 bits (496), Expect = 3.730e-61
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQ--QRSMSDEI--YLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWS 411
            GGLIKH A  E +W DTILQ  Q+   + +  Y D+  +R DETLA  +A YD VAART+E++A IDDLGQ VPVPKGVPWFP DV+AWSVRWVL HLIQETARHAGHAD++RE +DGATA PLMAAAEGWP +P++ PW+
Sbjct:   50 GGLIKHVAATEDSWLDTILQVPQKPFGEAMAEYQDAHRLRPDETLAGALARYDEVAARTAEVIAGIDDLGQPVPVPKGVPWFPQDVEAWSVRWVLLHLIQETARHAGHADIIREHLDGATAMPLMAAAEGWPESPFIKPWT 190          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A6I8M7A7_9PSEU (Protein of uncharacterized function DUF664 n=1 Tax=Amycolatopsis camponoti TaxID=2606593 RepID=A0A6I8M7A7_9PSEU)

HSP 1 Score: 194 bits (493), Expect = 9.690e-61
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTIL--QQRSMSDEI--YLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWS 411
            GGL+KH A+ E  W D +L   Q+   +    Y  ++S+   ETLA V+A YD VAART+E++A I+DLGQ VPVPKGVPW+P DV+AWSVRWVL HLI+ETARHAGHAD++RE VDGATA PLMAAAEGWPATPWM PWS
Sbjct:   50 GGLVKHVASTEDGWIDILLGLPQKPFDEATADYQAAYSLGPSETLASVLARYDEVAARTAEVIAGIEDLGQPVPVPKGVPWYPQDVEAWSVRWVLLHLIEETARHAGHADIIREHVDGATAIPLMAAAEGWPATPWMKPWS 190          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: M2PR12_9PSEU (Uncharacterized protein n=3 Tax=Amycolatopsis TaxID=1813 RepID=M2PR12_9PSEU)

HSP 1 Score: 194 bits (493), Expect = 1.250e-60
Identity = 96/146 (65.75%), Postives = 108/146 (73.97%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQRS------MSDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSATE 420
            GGLIKH A  E  W D +LQ+ S      M D  Y   + M D ETL DV+A YD VA RTSE++A I DLGQ VPVPKGVPW+P DV+AWSVRWVL HLI+ETARHAGHAD++RE VDGATA PLMAAAEGWP TPW+ PWS  E
Sbjct:   50 GGLIKHTAFTEDGWIDILLQKPSKPMEEAMKD--YEAGYVMADGETLDDVLARYDEVARRTSEVIAGIADLGQPVPVPKGVPWYPQDVEAWSVRWVLFHLIEETARHAGHADIIREHVDGATAIPLMAAAEGWPETPWLKPWSPAE 193          
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Match: A0A1H8YRE7_9PSEU (Uncharacterized protein n=1 Tax=Amycolatopsis saalfeldensis TaxID=394193 RepID=A0A1H8YRE7_9PSEU)

HSP 1 Score: 194 bits (492), Expect = 1.510e-60
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 GGLIKHGANVERNWADTILQQR------SMSDEIYLDSFSMRDDETLADVIAEYDAVAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETARHAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSAT 417
            GGL+KH AN E  W D +LQQ       SM+D  Y + + + + ET+A V+  YD VAART E+VA I DLGQ VPVP+GVPW+P DV+AWSVRWVL HLI+ETARHAGHAD++RES+DGATA PLMAAAEGWP + W+ PW AT
Sbjct:   50 GGLVKHAANTESGWIDVVLQQPQKPFEDSMAD--YFEHYRLGESETMASVLDRYDRVAARTEEVVAGIADLGQPVPVPQGVPWYPKDVEAWSVRWVLLHLIEETARHAGHADIIRESLDGATAMPLMAAAEGWPESDWLKPWQAT 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14665.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7I9V1_9ACTN5.090e-6667.61DUF664 domain-containing protein n=1 Tax=Streptosp... [more]
A0A848DEI8_9PSEU1.280e-6567.63DinB family protein n=1 Tax=Pseudonocardia bannens... [more]
UPI001F2B32781.900e-6365.97DinB family protein n=1 Tax=Amycolatopsis sp. GM8 ... [more]
A0A8H9MEK5_9PSEU2.200e-6266.67Uncharacterized protein n=1 Tax=Amycolatopsis bart... [more]
A0A4R6SKA7_9PSEU2.830e-6269.34Uncharacterized protein DUF664 n=1 Tax=Labedaea rh... [more]
A0A1H3SI54_9PSEU4.570e-6265.28Uncharacterized protein n=1 Tax=Amycolatopsis xyla... [more]
UPI001A8EC0E83.730e-6166.67DUF664 domain-containing protein n=1 Tax=Amycolato... [more]
A0A6I8M7A7_9PSEU9.690e-6165.25Protein of uncharacterized function DUF664 n=1 Tax... [more]
M2PR12_9PSEU1.250e-6065.75Uncharacterized protein n=3 Tax=Amycolatopsis TaxI... [more]
A0A1H8YRE7_9PSEU1.510e-6062.76Uncharacterized protein n=1 Tax=Amycolatopsis saal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14665contigP-wetherbeei_contig14665:2..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog287986.DV20_38885
PFAMsDUF664
Model size423
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.82e-66
EggNOG OGsCOG2318@1|root,COG2318@2|Bacteria,2GMS2@201174|Actinobacteria,4E62W@85010|Pseudonocardiales
DescriptionProtein of unknown function (DUF664)
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.487207-CDS-P-wetherbeei_contig14665:1..4241683186029.487207-CDS-P-wetherbeei_contig14665:1..424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14665 2..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14665.1.1prot_P-wetherbeei_contig14665.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14665 2..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14665.1.1

>prot_P-wetherbeei_contig14665.1.1 ID=prot_P-wetherbeei_contig14665.1.1|Name=mRNA_P-wetherbeei_contig14665.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
GGLIKHGANVERNWADTILQQRSMSDEIYLDSFSMRDDETLADVIAEYDA
VAARTSEIVAAIDDLGQAVPVPKGVPWFPDDVDAWSVRWVLAHLIQETAR
HAGHADVVRESVDGATAFPLMAAAEGWPATPWMTPWSATE*
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mRNA from alignment at P-wetherbeei_contig14665:2..424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14665.1.1 ID=mRNA_P-wetherbeei_contig14665.1.1|Name=mRNA_P-wetherbeei_contig14665.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig14665:2..424+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTTGATCAAGCACGGCGCCAACGTCGAGCGCAACTGGGCCGACAC GATCCTGCAGCAGCGATCTATGAGCGACGAGATCTACCTCGACAGCTTCT CGATGCGTGACGACGAAACCCTCGCCGACGTGATCGCCGAGTACGACGCC GTCGCCGCGCGCACGAGCGAGATCGTCGCCGCGATCGACGACCTCGGGCA GGCGGTCCCCGTCCCGAAGGGCGTGCCGTGGTTCCCCGACGACGTCGATG CCTGGTCGGTGCGCTGGGTGCTGGCCCACCTCATCCAGGAGACGGCGCGC CACGCCGGCCACGCCGACGTCGTCCGCGAGTCGGTCGACGGAGCGACTGC GTTCCCGTTGATGGCCGCCGCCGAAGGTTGGCCGGCAACCCCGTGGATGA CCCCCTGGAGCGCGACCGAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14665:2..424+

>mRNA_P-wetherbeei_contig14665.1.1 ID=mRNA_P-wetherbeei_contig14665.1.1|Name=mRNA_P-wetherbeei_contig14665.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig14665:2..424+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTTGATCAAGCACGGCGCCAACGTCGAGCGCAACTGGGCCGACAC
GATCCTGCAGCAGCGATCTATGAGCGACGAGATCTACCTCGACAGCTTCT
CGATGCGTGACGACGAAACCCTCGCCGACGTGATCGCCGAGTACGACGCC
GTCGCCGCGCGCACGAGCGAGATCGTCGCCGCGATCGACGACCTCGGGCA
GGCGGTCCCCGTCCCGAAGGGCGTGCCGTGGTTCCCCGACGACGTCGATG
CCTGGTCGGTGCGCTGGGTGCTGGCCCACCTCATCCAGGAGACGGCGCGC
CACGCCGGCCACGCCGACGTCGTCCGCGAGTCGGTCGACGGAGCGACTGC
GTTCCCGTTGATGGCCGCCGCCGAAGGTTGGCCGGCAACCCCGTGGATGA
CCCCCTGGAGCGCGACCGAGTAG
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