mRNA_P-wetherbeei_contig1463.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1463.2.1
Unique NamemRNA_P-wetherbeei_contig1463.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1463.2.1 vs. uniprot
Match: A0A5B8MIZ0_9CHLO (P-loop-containing nucleoside triphosphate hydrolase n=4 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MIZ0_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 1.170e-16
Identity = 101/371 (27.22%), Postives = 160/371 (43.13%), Query Frame = 1 
Query:    1 CVTLVYAPVGVPWVDEAMRRLAEANDLVFGTDVIPLPT----------ATPFVNDPLWC----------ETAGRGERLCALDG----LPERAQAWQRGDLTDLCAPCPLVWDNATFSDVFLTWPNYTQHGVLFHSAYMTLLGDRLGRDVAPESGYTLFYPGSVHFFSALSSAFAF--RRAPEPALVLSAKAA--EPGRVRME---------VNVRDFPTTRSRFYGFDLTAFEGGLFFFMAPASPFLLLLLAVVGEREVGHAAHLRMLGVGADAHLLSWAAAAGALSAVSAAAVVLTARLARLPLFLAAASPLTFLLFFLAGAAMSAAALALAAMVQTVKRAQTAGLVVVLVGLLAQAVACSAGGLLLRLL 1002
            C TL+YAP GVPWVDE M  +   N L    +V P+P             P   +P WC          +  G G    A  G    LP+ A + Q         PC  + D    +   +  P   Q+ V+F + Y+ + GD+   +     GY L+Y  S+  F    +      +RA + A++  +K    E G   +          ++   FP    R  GF   A  GG +F++ P   F   L+ +V E+E G    + ++G+    + L W       S +S+  ++++       LF  A   + FL+F   G AM++A+  LA ++ +VK AQT G  ++LVG + Q +  S  G L+ LL
Sbjct:  107 CHTLLYAPAGVPWVDEVMEIVRVQNGLGV-EEVGPVPNLVASRGGRAGGAPAWLEPKWCMDDYNTSLPCDVGGLGNTSTAAAGFPVELPDAACSSQYLADGHKVFPCAKMEDGERITRYMIENPGKAQNIVVFPAGYLGM-GDQAAAEF--PFGYELYYNQSLARFPVRENDHVLEAKRALDQAILSFSKRKNREEGEASLSGSDHPAVFNISWSPFPRPEPRLKGFSAVAVGGGYWFYLPPMIIFFTTLVDIVREKENGSRLMVSVMGLPVVVNWLVWFLQGSVFSQLSSLILIVSGLACNFDLFWNANFFVLFLMFSFFGTAMTSASQLLATLMSSVKAAQTVGYAIILVGFVFQVILGSGYGSLIYLL 473
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BLAST of mRNA_P-wetherbeei_contig1463.2.1 vs. uniprot
Match: A0A1Y2AGV2_9FUNG (ABC transporter domain-containing protein (Fragment) n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AGV2_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 3.170e-6
Identity = 60/221 (27.15%), Postives = 97/221 (43.89%), Query Frame = 1 
Query:  301 NYTQHGVLFHSAYMTLLGDRLGRDVAPESGYTLFYPGSVHFFSALSSAFAFR-----RAPEPALVLSAKAAEPGRVRMEVNVRDFPTTRSRFYGFDLTAFEGGLFFFMAPASPFLLLLLAVVGEREVGHAAHLRMLGVGADAHLLSWAAAAGALSAVSAAAVVLTARLARLPLFLAAASPLTFLLFFLAGAAMSAAALALAAMVQTVKRAQTAGLVVVLVG 948
            NYT +G++F         D    +      Y + Y  + HF S    + + R     R  + A+V  A +      +  + V+DFPT     YG     +   + FF      F+ LL +VV E+E      + M+G+    +  SWA       A++A   ++  +L     FL   S + FLLFFL G AM AAA+ +  +V   K A   G+ ++++G
Sbjct:  207 NYTNYGLIF---------DIKNTNGVTNYRYQVLYNSTAHFNSTERHSLSMRIVSVARGLDEAIVKYANSNPNATTKFNIEVKDFPTIGYEGYGEVGMMYYAPIVFFCISMVIFVHLLSSVVSEKETKVRYSMEMMGLKRSVYWTSWAILYIIYYALNAIFTIIIGKLFGYSFFLKTDSMVLFLLFFLYGIAMGAAAMFITTLVNRTKTAVLIGISILIIG 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1463.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5B8MIZ0_9CHLO1.170e-1627.22P-loop-containing nucleoside triphosphate hydrolas... [more]
A0A1Y2AGV2_9FUNG3.170e-627.15ABC transporter domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1463contigP-wetherbeei_contig1463:5895..7097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_06200T0
PFAMsABC_tran
Model size1017
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.57e-33
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size1017
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.3295674-CDS-P-wetherbeei_contig1463:5894..64131683186028.3295674-CDS-P-wetherbeei_contig1463:5894..6413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1463 5895..6413 -
1683186028.3476899-CDS-P-wetherbeei_contig1463:6599..70971683186028.3476899-CDS-P-wetherbeei_contig1463:6599..7097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1463 6600..7097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1463.2.1prot_P-wetherbeei_contig1463.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1463 5895..7097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1463.2.1

>prot_P-wetherbeei_contig1463.2.1 ID=prot_P-wetherbeei_contig1463.2.1|Name=mRNA_P-wetherbeei_contig1463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=339bp
CVTLVYAPVGVPWVDEAMRRLAEANDLVFGTDVIPLPTATPFVNDPLWCE
TAGRGERLCALDGLPERAQAWQRGDLTDLCAPCPLVWDNATFSDVFLTWP
NYTQHGVLFHSAYMTLLGDRLGRDVAPESGYTLFYPGSVHFFSALSSAFA
FRRAPEPALVLSAKAAEPGRVRMEVNVRDFPTTRSRFYGFDLTAFEGGLF
FFMAPASPFLLLLLAVVGEREVGHAAHLRMLGVGADAHLLSWAAAAGALS
AVSAAAVVLTARLARLPLFLAAASPLTFLLFFLAGAAMSAAALALAAMVQ
TVKRAQTAGLVVVLVGLLAQAVACSAGGLLLRLLFIDEV
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mRNA from alignment at P-wetherbeei_contig1463:5895..7097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1463.2.1 ID=mRNA_P-wetherbeei_contig1463.2.1|Name=mRNA_P-wetherbeei_contig1463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig1463:5895..7097- (Phaeothamnion wetherbeei SAG_119_79)
TGCGTGACGCTGGTGTACGCGCCCGTCGGCGTTCCCTGGGTCGACGAGGC
CATGCGCCGCCTGGCCGAGGCGAACGACCTTGTCTTTGGCACTGATGTCA
TCCCTCTCCCGACCGCGACACCCTTCGTCAACGATCCACTCTGGTGCGAG
ACCGCCGGGCGCGGCGAGCGCCTCTGCGCCCTCGACGGCCTCCCGGAGCG
GGCGCAGGCCTGGCAGCGTGGCGACCTGACGGATCTCTGCGCCCCGTGTC
CGCTCGTGTGGGACAATGCGACGTTCTCTGACGTCTTTCTGACCTGGCCG
AACTATACGCAGCACGGCGTCCTCTTCCACAGCGCCTACATGACGCTGCT
GGGCGACCGGCTCGGAAGGGACGTCGCCCCGGAGAGCGGCTACACGCTCT
TTTACCCGGGAAGTGTCCACTTCTTCAGCGCCCTCAGTAGCGCCTTTGCC
TTCCGACGCGCCCCCGAGCCCGCGCTCGTGCTATCGGCCAAGGCGGCCGT
CGATTCTGCCCTCCTCTCGCTGCGGCTGGACCAGGACGCCGCGCGCCTCG
GTATTGATCGCCGCCGCGCAGGCGATGACGACGGCGGCGAGAACAGCGAC
AGCGGCGCTGCTGCCGCCGGGGCCACCGATGCCCATGTTGACGCGGACGC
TGGCGCGGCTGCCGCGGCGTTGGCGGCGGGCCAGGAGCCGGGGCGCGTGC
GGATGGAGGTGAACGTGCGGGATTTTCCGACCACGCGGTCGCGCTTCTAC
GGCTTCGACCTCACGGCCTTCGAAGGCGGCCTCTTCTTCTTCATGGCGCC
CGCCTCGCCGTTCCTGTTACTACTGCTTGCGGTCGTCGGCGAGCGGGAGG
TTGGCCACGCCGCCCACCTGCGCATGCTGGGCGTCGGCGCCGATGCGCAC
CTCCTGTCGTGGGCGGCGGCTGCGGGGGCGCTGTCGGCGGTGTCGGCGGC
GGCGGTCGTCCTGACGGCGCGCCTGGCGCGGCTGCCGTTGTTTCTGGCGG
CCGCCTCGCCGCTGACGTTCCTGCTGTTCTTTCTGGCGGGAGCAGCGATG
TCGGCGGCGGCACTGGCGCTAGCGGCCATGGTCCAGACGGTGAAGCGTGC
TCAGACGGCGGGGTTGGTGGTTGTGCTGGTGGGGCTGCTGGCACAGGCGG
TGGCGTGCTCTGCCGGTGGGCTGCTGCTGCGGCTGCTCTTCATCGACGAG
GTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1463:5895..7097-

>mRNA_P-wetherbeei_contig1463.2.1 ID=mRNA_P-wetherbeei_contig1463.2.1|Name=mRNA_P-wetherbeei_contig1463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig1463:5895..7097- (Phaeothamnion wetherbeei SAG_119_79)
TGCGTGACGCTGGTGTACGCGCCCGTCGGCGTTCCCTGGGTCGACGAGGC
CATGCGCCGCCTGGCCGAGGCGAACGACCTTGTCTTTGGCACTGATGTCA
TCCCTCTCCCGACCGCGACACCCTTCGTCAACGATCCACTCTGGTGCGAG
ACCGCCGGGCGCGGCGAGCGCCTCTGCGCCCTCGACGGCCTCCCGGAGCG
GGCGCAGGCCTGGCAGCGTGGCGACCTGACGGATCTCTGCGCCCCGTGTC
CGCTCGTGTGGGACAATGCGACGTTCTCTGACGTCTTTCTGACCTGGCCG
AACTATACGCAGCACGGCGTCCTCTTCCACAGCGCCTACATGACGCTGCT
GGGCGACCGGCTCGGAAGGGACGTCGCCCCGGAGAGCGGCTACACGCTCT
TTTACCCGGGAAGTGTCCACTTCTTCAGCGCCCTCAGTAGCGCCTTTGCC
TTCCGACGCGCCCCCGAGCCCGCGCTCGTGCTATCGGCCAAGGCGGCCGA
GCCGGGGCGCGTGCGGATGGAGGTGAACGTGCGGGATTTTCCGACCACGC
GGTCGCGCTTCTACGGCTTCGACCTCACGGCCTTCGAAGGCGGCCTCTTC
TTCTTCATGGCGCCCGCCTCGCCGTTCCTGTTACTACTGCTTGCGGTCGT
CGGCGAGCGGGAGGTTGGCCACGCCGCCCACCTGCGCATGCTGGGCGTCG
GCGCCGATGCGCACCTCCTGTCGTGGGCGGCGGCTGCGGGGGCGCTGTCG
GCGGTGTCGGCGGCGGCGGTCGTCCTGACGGCGCGCCTGGCGCGGCTGCC
GTTGTTTCTGGCGGCCGCCTCGCCGCTGACGTTCCTGCTGTTCTTTCTGG
CGGGAGCAGCGATGTCGGCGGCGGCACTGGCGCTAGCGGCCATGGTCCAG
ACGGTGAAGCGTGCTCAGACGGCGGGGTTGGTGGTTGTGCTGGTGGGGCT
GCTGGCACAGGCGGTGGCGTGCTCTGCCGGTGGGCTGCTGCTGCGGCTGC
TCTTCATCGACGAGGTG
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