mRNA_P-wetherbeei_contig14566.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14566.1.2
Unique NamemRNA_P-wetherbeei_contig14566.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A7S2V1M3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1M3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.230e-33
Identity = 66/125 (52.80%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 RGRANMQWGPGRSPQEQPFKHGICS-CFENCT---SCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERGKVTKVFVQV 363
            RG+   Q+G  R   E P+KH I   CF +      CCC    P+CA+AQAR DFDGS+CCFN    FLCFT C+ RS++R+GYNIEGSC  DI  P     C A QL+NEV +RGKVTK +V V
Sbjct:  107 RGKVTAQYGSNRPATEVPWKHSIFDICFNSSNFIYGCCC----PSCAIAQARTDFDGSDCCFN----FLCFTPCLARSVIREGYNIEGSCIMDILCPWLCVECVACQLMNEVSDRGKVTKQYVSV 223          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A7S2XYH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.830e-29
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 RGRANMQWGPGRSPQEQPF-KHGICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERGKVTK 348
            RG  +  +G  R P  QP+ K G+CS F N     C   CP CA++QAR+ FDGS  CFN      C + C+ RS++R+GYNIEG+C+GD+ +P C P C+A Q+LNEV ERGKV K
Sbjct:  123 RGLVSADFGTARPPDPQPWTKKGVCSNFGNFFFGMC---CPHCAISQARSSFDGSEFCFNCC----CVSPCLARSVIREGYNIEGNCFGDLIYPCCCPSCAACQMLNEVDERGKVNK 232          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A8B6XKC8_HYDVU (protein PLANT CADMIUM RESISTANCE 1-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XKC8_HYDVU)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-12
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1
Query:   55 FKHGICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLC---FTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERG 336
            FKHGICSCF +C++C   +  P C  A   A+F   +CC        C    +  ++RS +R   NIEGSC GD    +  P C+  Q   E++  G
Sbjct:    4 FKHGICSCFNDCSTCIITYFLP-CVTAGKNAEFVSKSCCLYGCLSLTCVGPISRALVRSDIRQKLNIEGSCCGDFICHLFCPLCALVQESQEIQANG 99          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A3Q3ITC1_MONAL (Cornifelin homolog B-like n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3ITC1_MONAL)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-11
Identity = 40/108 (37.04%), Postives = 53/108 (49.07%), Query Frame = 1
Query:   64 GICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDIC---WPICLPCCSAAQLLNEVRERGKVTKVFVQVPVQSI 378
            G+C C  +  +CCCA  C  C   Q  A + G  CC   + +  C  SC+LRS +R+ YNI GSC  D C   W  C PC    Q+  E++ RGK       V  Q +
Sbjct:   23 GLCDCCSDMGTCCCALWCFPCMQCQT-ASYYGWCCCMPLLDV-CCVVSCILRSNIRERYNIPGSCCDDCCKLYW--CYPCVWC-QMHRELKVRGKTAGNNAVVTTQVV 125          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A3Q3IHB3_MONAL (Cornifelin homolog B-like n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3IHB3_MONAL)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 40/108 (37.04%), Postives = 53/108 (49.07%), Query Frame = 1
Query:   64 GICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDIC---WPICLPCCSAAQLLNEVRERGKVTKVFVQVPVQSI 378
            G+C C  +  +CCCA  C  C   Q  A + G  CC   + +  C  SC+LRS +R+ YNI GSC  D C   W  C PC    Q+  E++ RGK       V  Q +
Sbjct:   26 GLCDCCSDMGTCCCALWCFPCMQCQT-ASYYGWCCCMPLLDV-CCVVSCILRSNIRERYNIPGSCCDDCCKLYW--CYPCVWC-QMHRELKVRGKTAGNNAVVTTQVV 128          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A8B6XGP0_HYDVU (protein PLANT CADMIUM RESISTANCE 3-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XGP0_HYDVU)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-11
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 1
Query:   55 FKHGICSCFENCTSCCCAFICPACAMAQARADFDGSNCC-FNYVSIFLC--FTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERG 336
            FK+GIC C  + ++CC  +  P C  A   AD    NCC + ++ I      T  ++RS +R+ YNIEGSC GD    +  P C+  Q   E +  G
Sbjct:    4 FKNGICGCCSDISTCCITYFLP-CVTAGKNADHVNENCCLYGFLGITCVGPITRAIIRSKIREKYNIEGSCCGDFICHLFCPLCALVQESREAQANG 99          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A4W6ECG3_LATCA (Placenta-specific gene 8 protein-like n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6ECG3_LATCA)

HSP 1 Score: 63.2 bits (152), Expect = 3.600e-10
Identity = 34/91 (37.36%), Postives = 45/91 (49.45%), Query Frame = 1
Query:   64 GICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERG 336
            G+C CF +  +CCCA  C  C   Q  A   G  C    + +  C  SC LRS +R+ +NI GSC  D C  +    C   Q+  EV+ RG
Sbjct:   26 GLCDCFSDMGTCCCALWCFPCMQCQT-ASMHGWCCLMPCLDV-CCMVSCFLRSSIRERHNIPGSCCDDFCKLLWCYTCVWCQMHREVKIRG 114          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: UPI001BE553B6 (plac8 onzin related protein 1 n=1 Tax=Chelmon rostratus TaxID=109905 RepID=UPI001BE553B6)

HSP 1 Score: 62.8 bits (151), Expect = 4.850e-10
Identity = 34/105 (32.38%), Postives = 51/105 (48.57%), Query Frame = 1
Query:   64 GICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERGKVTKVFVQVPVQSI 378
            G+C C  + ++CCC   C  C   Q  AD+ G  CC   + +  C  SC+LRS +R+ YNI GS   D C  +    C   Q+  E++ R   +     V  Q++
Sbjct:   24 GLCDCCNDMSTCCCGLFCFPCMQCQTAADY-GWCCCMPLLDV-CCVVSCVLRSSIRERYNIPGSFCDDCCKLLWCYQCVWCQMNRELKIRDSRSGTTSVVTTQAV 126          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A8B6XXL9_HYDVU (protein PLANT CADMIUM RESISTANCE 3-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XXL9_HYDVU)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-9
Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 1
Query:   55 FKHGICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFL--CFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERG 336
            FKHGIC CF +C++C   +  P     +     D S C + ++ I      T  ++RS +R  + IEGSC  D    +  P C+  Q   E++  G
Sbjct:    4 FKHGICDCFSDCSTCLITYFLPCVTAGKNAEHVDKSCCLYGFLGITCVGAITRAIVRSDIRQKHQIEGSCCEDFICHLFCPICALVQESKEIQSSG 99          
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Match: A0A3Q1GY46_ANATE (Cornifelin-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1GY46_ANATE)

HSP 1 Score: 55.1 bits (131), Expect = 4.350e-7
Identity = 33/105 (31.43%), Postives = 47/105 (44.76%), Query Frame = 1
Query:   64 GICSCFENCTSCCCAFICPACAMAQARADFDGSNCCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLLNEVRERGKVTKVFVQVPVQSI 378
            G+  C  +  + CC F C  C   +    F    CC   ++   C  S +LR+ +R+ YNI GSC GD C  I    C+  Q+  E+R R   T     V  Q +
Sbjct:   23 GLFDCCSDMETFCCGFWCFPCMQCETAHTFGW--CCCVPMADECCVVSYLLRTSIRERYNIPGSCCGDYCTVIWCNECAWCQMRRELRIRANQTTTMQVVTSQLL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14566.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S2V1M3_9STRA8.230e-3352.80Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XYH0_9STRA2.830e-2949.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8B6XKC8_HYDVU1.260e-1236.08protein PLANT CADMIUM RESISTANCE 1-like n=1 Tax=Hy... [more]
A0A3Q3ITC1_MONAL1.090e-1137.04Cornifelin homolog B-like n=1 Tax=Monopterus albus... [more]
A0A3Q3IHB3_MONAL1.170e-1137.04Cornifelin homolog B-like n=1 Tax=Monopterus albus... [more]
A0A8B6XGP0_HYDVU2.000e-1136.08protein PLANT CADMIUM RESISTANCE 3-like n=2 Tax=Hy... [more]
A0A4W6ECG3_LATCA3.600e-1037.36Placenta-specific gene 8 protein-like n=1 Tax=Late... [more]
UPI001BE553B64.850e-1032.38plac8 onzin related protein 1 n=1 Tax=Chelmon rost... [more]
A0A8B6XXL9_HYDVU1.240e-931.25protein PLANT CADMIUM RESISTANCE 3-like n=2 Tax=Hy... [more]
A0A3Q1GY46_ANATE4.350e-731.43Cornifelin-like n=1 Tax=Anabas testudineus TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14566contigP-wetherbeei_contig14566:126..1002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6087.XP_002158056.1
PFAMsPLAC8
Model size387
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.25e-13
EggNOG OGs2E0DQ@1|root,2S6TH@2759|Eukaryota,3ABUN@33154|Opisthokonta,3BU6Q@33208|Metazoa
DescriptionPLAC8 family
Cds size372
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.1927917-UTR-P-wetherbeei_contig14566:125..1401683186026.1927917-UTR-P-wetherbeei_contig14566:125..140Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14566 126..140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.2021968-CDS-P-wetherbeei_contig14566:140..3171683186026.2021968-CDS-P-wetherbeei_contig14566:140..317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14566 141..317 +
1683186026.2150369-CDS-P-wetherbeei_contig14566:807..10021683186026.2150369-CDS-P-wetherbeei_contig14566:807..1002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14566 808..1002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14566.1.2prot_P-wetherbeei_contig14566.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14566 141..1002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14566.1.2

>prot_P-wetherbeei_contig14566.1.2 ID=prot_P-wetherbeei_contig14566.1.2|Name=mRNA_P-wetherbeei_contig14566.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MQWGPGRSPQEQPFKHGICSCFENCTSCCCAFICPACAMAQARADFDGSN
CCFNYVSIFLCFTSCMLRSIVRDGYNIEGSCWGDICWPICLPCCSAAQLL
NEVRERGKVTKVFVQVPVQSIQR*
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mRNA from alignment at P-wetherbeei_contig14566:126..1002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14566.1.2 ID=mRNA_P-wetherbeei_contig14566.1.2|Name=mRNA_P-wetherbeei_contig14566.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=877bp|location=Sequence derived from alignment at P-wetherbeei_contig14566:126..1002+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCCGCGCCAACATGCAGTGGGGGCCTGGGCGCTCGCCGCAGGAACA GCCCTTCAAGCACGGCATCTGCTCGTGCTTCGAGAATTGCACGAGCTGCT GCTGCGCCTTCATCTGCCCGGCGTGCGCCATGGCCCAAGCCCGCGCCGAC TTCGACGGCAGCAACTGCTGCTTTAACTACGTGAGTATATTTGTTCTTTC CTTGGAGTCCGCCCGACGTTCGGTTACGGAAGGTTGCTTTTCTTTGTTGG GGTTTACGGCTTGGGGCTCGGGAGATTTTCAGGGTCTGCCCCCGGCAGCA GCAGCTGCTGCACCAATCGTGGTTGGAGGCAGCCGGTGTTGGTGGCGCAT GTCTCGTCTCCATTCTTCTTTCTTCAATCTTTCTGTCCAATGTTTGTTGT ATTTGCGGGGATGGCGGGGCGGGCTATGAATTCAAACCTGCCCGATATCT GCTTCGGTCGGCGGCCTCGTCGTAAACAGCCGGCGTGCCAGCTGCCGGCG ACAGCGCTGCCCCTTACAAACCAACTCATGTTTCCTTTCTTCCATTGTTC TCTCCACCTTCCACATCCCCTGCCCGCGTCGCACCGTGCCGCGTTGCACG CACGTCCCTCGCCGTGCGGCACGTACTCCTTCCTCCATTCCTTTCGCGTA CTACTGCATCGCCAAACCACCTCCGCCGGCAGCTGTGCTTCACGAGCTGT ATGCTGCGCAGCATCGTGCGGGACGGCTATAACATCGAGGGCTCGTGCTG GGGCGACATCTGCTGGCCGATCTGTCTGCCGTGCTGCTCCGCTGCTCAGC TGCTCAACGAGGTGCGCGAACGCGGCAAGGTCACCAAGGTCTTCGTCCAG GTGCCCGTCCAGAGCATCCAGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14566:126..1002+

>mRNA_P-wetherbeei_contig14566.1.2 ID=mRNA_P-wetherbeei_contig14566.1.2|Name=mRNA_P-wetherbeei_contig14566.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig14566:126..1002+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTGGGGGCCTGGGCGCTCGCCGCAGGAACAGCCCTTCAAGCACGG
CATCTGCTCGTGCTTCGAGAATTGCACGAGCTGCTGCTGCGCCTTCATCT
GCCCGGCGTGCGCCATGGCCCAAGCCCGCGCCGACTTCGACGGCAGCAAC
TGCTGCTTTAACTACGTGAGTATATTTCTGTGCTTCACGAGCTGTATGCT
GCGCAGCATCGTGCGGGACGGCTATAACATCGAGGGCTCGTGCTGGGGCG
ACATCTGCTGGCCGATCTGTCTGCCGTGCTGCTCCGCTGCTCAGCTGCTC
AACGAGGTGCGCGAACGCGGCAAGGTCACCAAGGTCTTCGTCCAGGTGCC
CGTCCAGAGCATCCAGCGCTGA
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